Wall clock time and date at job start Tue Mar 31 2020 05:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80996 * 1 3 3 C 1.76201 * 100.00097 * 2 1 4 4 C 1.39470 * 120.49334 * 180.02562 * 3 2 1 5 5 C 1.39274 * 118.21308 * 179.97438 * 4 3 2 6 6 C 1.48213 * 120.51474 * 180.02562 * 5 4 3 7 7 C 1.39498 * 120.04860 * 359.70517 * 6 5 4 8 8 C 1.37804 * 119.93859 * 179.76503 * 7 6 5 9 9 C 1.39035 * 120.05619 * 0.53450 * 8 7 6 10 10 O 1.35661 * 119.94163 * 179.72151 * 9 8 7 11 11 C 1.34816 * 116.99729 * 174.42513 * 10 9 8 12 12 H 1.07998 * 120.00046 * 5.05809 * 11 10 9 13 13 C 1.38665 * 120.00113 * 185.05456 * 11 10 9 14 14 N 1.31549 * 120.00162 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00179 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47108 * 90.00052 * 15 13 11 17 17 H 1.48504 * 109.47233 * 210.00255 * 15 13 11 18 18 H 1.48495 * 109.47246 * 330.00102 * 15 13 11 19 19 C 1.39026 * 120.10864 * 359.69370 * 9 8 7 20 20 C 1.37796 * 120.05940 * 0.04691 * 19 9 8 21 21 N 1.33471 * 118.97866 * 0.02562 * 5 4 3 22 22 C 1.31635 * 120.88267 * 359.97438 * 21 5 4 23 23 N 1.31788 * 121.98075 * 359.97438 * 22 21 5 24 24 H 1.09003 * 109.46941 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47276 * 299.99693 * 1 2 3 26 26 H 1.08994 * 109.47242 * 60.00074 * 1 2 3 27 27 H 1.08001 * 120.89100 * 359.97438 * 4 3 2 28 28 H 1.07990 * 120.03154 * 359.97438 * 7 6 5 29 29 H 1.08004 * 119.96949 * 180.25333 * 8 7 6 30 30 H 0.96996 * 120.00464 * 179.97438 * 14 13 11 31 31 H 1.08001 * 119.96859 * 180.02562 * 19 9 8 32 32 H 1.07992 * 120.03083 * 179.97438 * 20 19 9 33 33 H 1.08000 * 119.00842 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 6 3.4224 2.2235 -0.0005 5 6 3.6095 3.6036 -0.0011 6 6 4.9759 4.1778 -0.0022 7 6 6.0877 3.3353 0.0034 8 6 7.3571 3.8715 -0.0026 9 6 7.5302 5.2511 -0.0030 10 8 8.7809 5.7765 -0.0032 11 6 8.8821 7.1158 -0.1203 12 1 7.9911 7.7261 -0.1262 13 6 10.1300 7.7096 -0.2330 14 7 11.2153 6.9662 -0.2263 15 14 10.2702 9.5652 -0.3960 16 1 10.3775 10.1740 0.9542 17 1 11.4798 9.9026 -1.1888 18 1 9.0647 10.0942 -1.0831 19 6 6.4237 6.0928 -0.0038 20 6 5.1523 5.5615 -0.0032 21 7 2.5394 4.4013 -0.0005 22 6 1.3225 3.8993 0.0000 23 7 1.1036 2.5997 -0.0005 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 4.2663 1.5495 -0.0005 28 1 5.9537 2.2637 0.0091 29 1 8.2182 3.2196 -0.0023 30 1 12.0883 7.3815 -0.3055 31 1 6.5608 7.1641 -0.0046 32 1 4.2932 6.2158 -0.0034 33 1 0.4781 4.5727 0.0009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243589644.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:31 Heat of formation + Delta-G solvation = 26.123094 kcal Electronic energy + Delta-G solvation = -18741.965148 eV Core-core repulsion = 15666.058793 eV Total energy + Delta-G solvation = -3075.906356 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.88356 -40.74173 -38.37504 -34.97307 -34.29443 -33.44510 -31.92260 -30.27916 -29.77872 -27.53868 -25.70104 -25.37933 -23.34486 -22.64450 -20.00074 -19.48079 -18.66496 -18.44915 -16.90080 -16.59654 -16.28107 -16.15546 -16.05903 -15.72067 -15.60806 -15.01534 -14.81119 -14.52229 -14.41244 -14.13559 -13.60930 -13.41611 -13.34612 -12.74726 -12.74136 -12.56523 -12.13731 -12.02091 -11.98527 -11.63779 -11.24452 -11.15691 -10.72198 -10.31381 -9.91765 -8.99851 -8.77410 -8.53042 -6.19791 -0.50735 -0.15200 0.34313 0.54485 0.86033 1.17853 1.36217 1.45049 1.53371 2.15020 2.57176 2.90861 2.98528 3.17159 3.25795 3.39420 3.67688 3.99406 4.01599 4.08948 4.31578 4.34528 4.40600 4.41779 4.56442 4.69968 4.89794 4.95900 5.07120 5.18545 5.23292 5.51378 5.54068 5.61537 5.89664 5.96036 6.02614 6.91248 7.03378 7.66124 8.68834 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.044002 B = 0.002948 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.181720 B = 9494.360765 C =10108.693351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 S -0.046 6.046 3 C 0.152 3.848 4 C -0.220 4.220 5 C 0.247 3.753 6 C -0.161 4.161 7 C -0.028 4.028 8 C -0.203 4.203 9 C 0.139 3.861 10 O -0.215 6.215 11 C -0.417 4.417 12 H 0.106 0.894 13 C -0.017 4.017 14 N -0.912 5.912 15 Si 1.018 2.982 16 H -0.262 1.262 17 H -0.270 1.270 18 H -0.253 1.253 19 C -0.250 4.250 20 C -0.017 4.017 21 N -0.551 5.551 22 C 0.313 3.687 23 N -0.547 5.547 24 H 0.128 0.872 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.165 0.835 28 H 0.159 0.841 29 H 0.130 0.870 30 H 0.276 0.724 31 H 0.127 0.873 32 H 0.138 0.862 33 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.128 -10.364 0.175 22.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 S 0.191 5.809 3 C -0.104 4.104 4 C -0.248 4.248 5 C 0.105 3.895 6 C -0.163 4.163 7 C -0.047 4.047 8 C -0.222 4.222 9 C 0.086 3.914 10 O -0.120 6.120 11 C -0.493 4.493 12 H 0.123 0.877 13 C -0.216 4.216 14 N -0.549 5.549 15 Si 0.837 3.163 16 H -0.187 1.187 17 H -0.195 1.195 18 H -0.176 1.176 19 C -0.269 4.269 20 C -0.036 4.036 21 N -0.268 5.268 22 C 0.022 3.978 23 N -0.267 5.267 24 H 0.146 0.854 25 H 0.107 0.893 26 H 0.107 0.893 27 H 0.182 0.818 28 H 0.176 0.824 29 H 0.148 0.852 30 H 0.085 0.915 31 H 0.145 0.855 32 H 0.156 0.844 33 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -19.770 -10.877 0.176 22.565 hybrid contribution 0.368 1.497 -0.034 1.542 sum -19.402 -9.380 0.142 21.551 Atomic orbital electron populations 1.23551 0.91614 1.07757 1.06993 1.85834 1.10446 0.94735 1.89853 1.23764 0.91809 1.00776 0.94045 1.22510 0.98264 0.96510 1.07531 1.19969 0.92079 0.89583 0.87880 1.18166 0.89830 0.93426 1.14888 1.21047 0.89532 1.00255 0.93903 1.20386 0.98526 0.91495 1.11786 1.20100 0.85280 0.94027 0.91986 1.83921 1.23945 1.24890 1.79230 1.21903 0.95393 0.79218 1.52757 0.87691 1.26603 0.93390 1.06165 0.95433 1.70159 0.98831 1.38512 1.47402 0.84590 0.79031 0.73428 0.79237 1.18715 1.19504 1.17635 1.21212 0.92393 1.00509 1.12806 1.21055 0.95876 0.94543 0.92138 1.68461 0.99852 1.41014 1.17506 1.25475 0.94162 0.89669 0.88525 1.68758 1.33957 1.04811 1.19184 0.85394 0.89264 0.89279 0.81789 0.82377 0.85225 0.91526 0.85538 0.84394 0.75589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 9.68 113.37 1.10 -0.47 16 2 S -0.05 -0.81 22.74 -56.49 -1.28 -2.09 16 3 C 0.15 3.58 7.00 84.79 0.59 4.18 16 4 C -0.22 -5.64 9.30 22.82 0.21 -5.43 16 5 C 0.25 7.45 6.75 41.80 0.28 7.73 16 6 C -0.16 -5.47 5.88 -20.02 -0.12 -5.59 16 7 C -0.03 -0.93 9.43 22.47 0.21 -0.71 16 8 C -0.20 -8.13 9.98 22.36 0.22 -7.91 16 9 C 0.14 6.66 6.65 22.65 0.15 6.81 16 10 O -0.22 -12.44 9.75 -21.61 -0.21 -12.65 16 11 C -0.42 -23.46 9.48 67.92 0.64 -22.81 16 12 H 0.11 5.42 5.19 -2.91 -0.02 5.40 16 13 C -0.02 -0.93 5.49 84.84 0.47 -0.46 16 14 N -0.91 -54.17 13.67 21.62 0.30 -53.88 16 15 Si 1.02 41.49 29.55 68.60 2.03 43.51 16 16 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 17 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 18 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 19 C -0.25 -10.78 9.15 22.35 0.20 -10.58 16 20 C -0.02 -0.63 9.58 22.47 0.22 -0.41 16 21 N -0.55 -15.97 9.58 -189.35 -1.81 -17.78 16 22 C 0.31 7.29 12.28 180.93 2.22 9.51 16 23 N -0.55 -12.78 9.29 -196.41 -1.83 -14.61 16 24 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.09 1.14 8.14 -2.40 -0.02 1.12 16 27 H 0.16 3.53 6.31 -2.91 -0.02 3.51 16 28 H 0.16 3.85 6.26 -2.92 -0.02 3.83 16 29 H 0.13 4.96 8.06 -2.91 -0.02 4.94 16 30 H 0.28 14.95 8.31 -92.71 -0.77 14.18 16 31 H 0.13 5.49 5.62 -2.91 -0.02 5.47 16 32 H 0.14 4.64 7.57 -2.91 -0.02 4.61 16 33 H 0.23 3.44 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -68.21 306.35 4.75 -63.46 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 1.15 Total: 20.17 kcal Atomic # 6 Polarization: -32.54 SS G_CDS: 6.40 Total: -26.14 kcal Atomic # 7 Polarization: -82.92 SS G_CDS: -3.34 Total: -86.27 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -0.21 Total: -12.65 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.51 kcal Atomic # 16 Polarization: -0.81 SS G_CDS: -1.28 Total: -2.09 kcal Total: -68.21 4.75 -63.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243589644.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.586 kcal (2) G-P(sol) polarization free energy of solvation -68.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds