Wall clock time and date at job start Tue Mar 31 2020 05:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76206 * 102.99994 * 2 1 4 4 C 1.39440 * 120.79582 * 179.97438 * 3 2 1 5 5 N 1.32086 * 119.09976 * 179.72411 * 4 3 2 6 6 C 1.32655 * 120.82484 * 0.25409 * 5 4 3 7 7 C 1.48171 * 119.12988 * 180.02562 * 6 5 4 8 8 C 1.39508 * 120.05655 * 359.72355 * 7 6 5 9 9 C 1.37795 * 119.94089 * 179.77281 * 8 7 6 10 10 C 1.39026 * 120.05780 * 0.52309 * 9 8 7 11 11 O 1.35667 * 119.94631 * 179.72313 * 10 9 8 12 12 C 1.34819 * 117.00244 * 174.43023 * 11 10 9 13 13 H 1.07994 * 119.99920 * 5.06077 * 12 11 10 14 14 C 1.38654 * 119.99732 * 185.05653 * 12 11 10 15 15 N 1.31551 * 120.00212 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99553 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46870 * 90.00669 * 16 14 12 18 18 H 1.48501 * 109.47175 * 210.00324 * 16 14 12 19 19 H 1.48496 * 109.47542 * 330.00320 * 16 14 12 20 20 C 1.39033 * 120.11737 * 359.70742 * 10 9 8 21 21 C 1.37799 * 120.05163 * 0.03801 * 20 10 9 22 22 N 1.32662 * 121.73952 * 359.97438 * 6 5 4 23 23 C 1.32075 * 120.82432 * 0.02562 * 22 6 5 24 24 H 1.08993 * 109.47174 * 299.99886 * 1 2 3 25 25 H 1.08998 * 109.47131 * 60.00360 * 1 2 3 26 26 H 1.09006 * 109.46763 * 179.97438 * 1 2 3 27 27 H 1.08001 * 120.45333 * 0.02562 * 4 3 2 28 28 H 1.07997 * 120.03224 * 359.97438 * 8 7 6 29 29 H 1.07998 * 119.97203 * 180.25608 * 9 8 7 30 30 H 0.97004 * 120.00019 * 179.97438 * 15 14 12 31 31 H 1.07994 * 119.97749 * 180.02562 * 20 10 9 32 32 H 1.08002 * 120.02843 * 180.02562 * 21 20 10 33 33 H 1.08001 * 120.45043 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 3.5381 2.1431 0.0005 5 7 3.7970 3.4383 -0.0050 6 6 2.8132 4.3281 -0.0060 7 6 3.1464 5.7719 -0.0129 8 6 4.4802 6.1811 -0.0125 9 6 4.7874 7.5243 -0.0236 10 6 3.7697 8.4715 -0.0244 11 8 4.0748 9.7934 -0.0297 12 6 3.0472 10.6583 -0.1467 13 1 2.0311 10.2925 -0.1486 14 6 3.2951 12.0174 -0.2646 15 7 4.5329 12.4629 -0.2628 16 14 1.8713 13.2157 -0.4274 17 1 1.4442 13.6632 0.9226 18 1 2.3028 14.3915 -1.2252 19 1 0.7353 12.5450 -1.1091 20 6 2.4397 8.0664 -0.0200 21 6 2.1271 6.7243 -0.0141 22 7 1.5388 3.9596 -0.0020 23 6 1.2038 2.6820 0.0037 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 4.3438 1.4239 0.0005 28 1 5.2712 5.4458 -0.0066 29 1 5.8197 7.8416 -0.0274 30 1 4.7063 13.4137 -0.3456 31 1 1.6509 8.8040 -0.0210 32 1 1.0938 6.4101 -0.0111 33 1 0.1644 2.3887 0.0065 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243590646.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:40 Heat of formation + Delta-G solvation = 47.815916 kcal Electronic energy + Delta-G solvation = -18706.301781 eV Core-core repulsion = 15631.336097 eV Total energy + Delta-G solvation = -3074.965684 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.82270 -39.01490 -36.57509 -33.78654 -32.79718 -32.18045 -30.27620 -29.56711 -28.63290 -25.68090 -24.54610 -24.04290 -21.76193 -21.04548 -18.18969 -17.89495 -17.44804 -17.40075 -16.59039 -15.03993 -14.97660 -14.64467 -14.41822 -14.18356 -13.99585 -13.79794 -13.72820 -13.50967 -13.24089 -12.80743 -12.50737 -11.81548 -11.64624 -11.59783 -11.14543 -11.11847 -10.87961 -10.76289 -10.52717 -10.42411 -10.35973 -9.49526 -9.13400 -8.97602 -8.28166 -7.94119 -7.09242 -6.61828 -4.16790 0.54115 1.10078 1.17037 2.04139 2.22020 2.23610 3.05707 3.06835 3.11932 3.82217 3.85465 4.02711 4.18097 4.39244 4.58936 4.66123 4.66465 4.85955 4.97236 5.13037 5.22120 5.29814 5.49739 5.70233 5.78755 6.14031 6.26986 6.33465 6.57254 6.81950 6.86594 7.00691 7.20196 7.26126 7.31159 7.68406 7.83986 8.20086 8.82964 9.49952 10.54796 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.042497 B = 0.002863 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.719592 B = 9776.892128 C =10415.557189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 S -0.097 6.097 3 C -0.239 4.239 4 C 0.184 3.816 5 N -0.509 5.509 6 C 0.390 3.610 7 C -0.166 4.166 8 C -0.019 4.019 9 C -0.204 4.204 10 C 0.173 3.827 11 O -0.162 6.162 12 C -0.391 4.391 13 H 0.098 0.902 14 C 0.041 3.959 15 N -0.852 5.852 16 Si 0.945 3.055 17 H -0.271 1.271 18 H -0.276 1.276 19 H -0.265 1.265 20 C -0.247 4.247 21 C -0.014 4.014 22 N -0.510 5.510 23 C 0.151 3.849 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.110 0.890 27 H 0.169 0.831 28 H 0.127 0.873 29 H 0.123 0.877 30 H 0.274 0.726 31 H 0.133 0.867 32 H 0.122 0.878 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.112 -19.837 0.298 21.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.317 4.317 2 S 0.140 5.860 3 C -0.356 4.356 4 C 0.010 3.990 5 N -0.222 5.222 6 C 0.130 3.870 7 C -0.169 4.169 8 C -0.039 4.039 9 C -0.223 4.223 10 C 0.116 3.884 11 O -0.063 6.063 12 C -0.467 4.467 13 H 0.115 0.885 14 C -0.165 4.165 15 N -0.485 5.485 16 Si 0.769 3.231 17 H -0.197 1.197 18 H -0.201 1.201 19 H -0.189 1.189 20 C -0.266 4.266 21 C -0.034 4.034 22 N -0.224 5.224 23 C -0.023 4.023 24 H 0.104 0.896 25 H 0.104 0.896 26 H 0.129 0.871 27 H 0.186 0.814 28 H 0.145 0.855 29 H 0.141 0.859 30 H 0.084 0.916 31 H 0.150 0.850 32 H 0.140 0.860 33 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -5.889 -19.479 0.289 20.352 hybrid contribution -1.866 0.659 -0.063 1.980 sum -7.754 -18.820 0.225 20.356 Atomic orbital electron populations 1.23686 0.94780 1.07366 1.05842 1.85304 1.06404 1.01227 1.93017 1.23449 0.99685 0.99231 1.13230 1.22860 0.93475 0.92492 0.90151 1.68469 1.36827 1.01656 1.15290 1.21506 0.83327 0.94352 0.87858 1.17505 0.94070 0.86353 1.19014 1.20761 0.94912 0.94614 0.93608 1.20160 0.98340 0.91141 1.12680 1.19594 0.92781 0.85290 0.90772 1.83940 1.35996 1.10704 1.75633 1.21478 0.86803 0.86622 1.51811 0.88505 1.25388 0.98228 0.96825 0.96060 1.70036 1.18901 1.15557 1.44036 0.85649 0.79448 0.79181 0.78857 1.19658 1.20077 1.18937 1.21098 0.96558 0.95860 1.13114 1.20862 0.98262 0.91616 0.92681 1.68374 1.21032 1.17796 1.15171 1.23162 0.98946 0.87900 0.92257 0.89607 0.89610 0.87137 0.81436 0.85489 0.85858 0.91633 0.84980 0.86010 0.82142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.18 101.05 0.93 0.10 16 2 S -0.10 -0.86 22.60 -107.50 -2.43 -3.29 16 3 C -0.24 -2.82 6.16 -38.68 -0.24 -3.06 16 4 C 0.18 2.38 11.09 -16.99 -0.19 2.19 16 5 N -0.51 -8.20 9.43 -10.99 -0.10 -8.30 16 6 C 0.39 6.86 7.55 -156.90 -1.18 5.67 16 7 C -0.17 -3.17 5.88 -104.87 -0.62 -3.79 16 8 C -0.02 -0.36 9.55 -39.27 -0.38 -0.73 16 9 C -0.20 -4.27 9.98 -39.45 -0.39 -4.67 16 10 C 0.17 4.08 6.65 -38.99 -0.26 3.82 16 11 O -0.16 -4.47 9.75 0.33 0.00 -4.47 16 12 C -0.39 -10.52 9.48 30.89 0.29 -10.23 16 13 H 0.10 2.39 5.19 -52.49 -0.27 2.12 16 14 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 15 N -0.85 -24.10 13.67 55.48 0.76 -23.34 16 16 Si 0.94 19.72 29.55 -169.99 -5.02 14.69 16 17 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 18 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 19 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 20 C -0.25 -5.30 9.15 -39.45 -0.36 -5.66 16 21 C -0.01 -0.27 9.55 -39.27 -0.38 -0.65 16 22 N -0.51 -8.23 9.43 -10.99 -0.10 -8.33 16 23 C 0.15 1.91 10.63 -16.99 -0.18 1.73 16 24 H 0.08 0.44 7.78 -51.93 -0.40 0.03 16 25 H 0.08 0.44 7.80 -51.92 -0.41 0.04 16 26 H 0.11 0.42 8.14 -51.92 -0.42 0.00 16 27 H 0.17 1.66 8.06 -52.49 -0.42 1.24 16 28 H 0.13 2.17 7.50 -52.49 -0.39 1.77 16 29 H 0.12 2.45 8.06 -52.49 -0.42 2.02 16 30 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.13 2.78 5.62 -52.49 -0.30 2.49 16 32 H 0.12 2.15 7.50 -52.49 -0.39 1.76 16 33 H 0.16 1.49 6.06 -52.49 -0.32 1.17 16 LS Contribution 306.11 15.07 4.61 4.61 Total: -1.00 -30.40 306.11 -8.22 -38.62 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -2.88 Total: 4.09 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -3.05 Total: -14.29 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 0.55 Total: -39.97 kcal Atomic # 8 Polarization: -4.47 SS G_CDS: 0.00 Total: -4.47 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.69 kcal Atomic # 16 Polarization: -0.86 SS G_CDS: -2.43 Total: -3.29 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.40 -8.22 -38.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243590646.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.434 kcal (2) G-P(sol) polarization free energy of solvation -30.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds