Wall clock time and date at job start Tue Mar 31 2020 05:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76206 * 102.99994 * 2 1 4 4 C 1.39440 * 120.79582 * 179.97438 * 3 2 1 5 5 N 1.32086 * 119.09976 * 179.72411 * 4 3 2 6 6 C 1.32655 * 120.82484 * 0.25409 * 5 4 3 7 7 C 1.48171 * 119.12988 * 180.02562 * 6 5 4 8 8 C 1.39508 * 120.05655 * 359.72355 * 7 6 5 9 9 C 1.37795 * 119.94089 * 179.77281 * 8 7 6 10 10 C 1.39026 * 120.05780 * 0.52309 * 9 8 7 11 11 O 1.35667 * 119.94631 * 179.72313 * 10 9 8 12 12 C 1.34819 * 117.00244 * 174.43023 * 11 10 9 13 13 H 1.07994 * 119.99920 * 5.06077 * 12 11 10 14 14 C 1.38654 * 119.99732 * 185.05653 * 12 11 10 15 15 N 1.31551 * 120.00212 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99553 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46870 * 90.00669 * 16 14 12 18 18 H 1.48501 * 109.47175 * 210.00324 * 16 14 12 19 19 H 1.48496 * 109.47542 * 330.00320 * 16 14 12 20 20 C 1.39033 * 120.11737 * 359.70742 * 10 9 8 21 21 C 1.37799 * 120.05163 * 0.03801 * 20 10 9 22 22 N 1.32662 * 121.73952 * 359.97438 * 6 5 4 23 23 C 1.32075 * 120.82432 * 0.02562 * 22 6 5 24 24 H 1.08993 * 109.47174 * 299.99886 * 1 2 3 25 25 H 1.08998 * 109.47131 * 60.00360 * 1 2 3 26 26 H 1.09006 * 109.46763 * 179.97438 * 1 2 3 27 27 H 1.08001 * 120.45333 * 0.02562 * 4 3 2 28 28 H 1.07997 * 120.03224 * 359.97438 * 8 7 6 29 29 H 1.07998 * 119.97203 * 180.25608 * 9 8 7 30 30 H 0.97004 * 120.00019 * 179.97438 * 15 14 12 31 31 H 1.07994 * 119.97749 * 180.02562 * 20 10 9 32 32 H 1.08002 * 120.02843 * 180.02562 * 21 20 10 33 33 H 1.08001 * 120.45043 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 3.5381 2.1431 0.0005 5 7 3.7970 3.4383 -0.0050 6 6 2.8132 4.3281 -0.0060 7 6 3.1464 5.7719 -0.0129 8 6 4.4802 6.1811 -0.0125 9 6 4.7874 7.5243 -0.0236 10 6 3.7697 8.4715 -0.0244 11 8 4.0748 9.7934 -0.0297 12 6 3.0472 10.6583 -0.1467 13 1 2.0311 10.2925 -0.1486 14 6 3.2951 12.0174 -0.2646 15 7 4.5329 12.4629 -0.2628 16 14 1.8713 13.2157 -0.4274 17 1 1.4442 13.6632 0.9226 18 1 2.3028 14.3915 -1.2252 19 1 0.7353 12.5450 -1.1091 20 6 2.4397 8.0664 -0.0200 21 6 2.1271 6.7243 -0.0141 22 7 1.5388 3.9596 -0.0020 23 6 1.2038 2.6820 0.0037 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 4.3438 1.4239 0.0005 28 1 5.2712 5.4458 -0.0066 29 1 5.8197 7.8416 -0.0274 30 1 4.7063 13.4137 -0.3456 31 1 1.6509 8.8040 -0.0210 32 1 1.0938 6.4101 -0.0111 33 1 0.1644 2.3887 0.0065 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243590646.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:40 Heat of formation + Delta-G solvation = 29.907183 kcal Electronic energy + Delta-G solvation = -18707.078362 eV Core-core repulsion = 15631.336097 eV Total energy + Delta-G solvation = -3075.742265 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.99685 -40.72571 -38.25662 -34.92210 -34.47682 -33.61140 -31.90790 -30.46690 -29.74235 -27.52441 -25.64777 -25.39674 -23.37448 -22.58370 -19.94947 -19.20856 -18.62160 -18.58298 -18.04363 -16.37516 -16.20121 -16.12245 -15.97558 -15.58966 -15.28445 -15.11930 -14.64977 -14.52341 -14.47259 -14.17128 -13.70514 -13.57985 -13.19018 -12.88108 -12.67002 -12.44255 -12.33144 -12.12110 -12.03140 -11.56362 -11.31915 -11.25533 -10.80276 -10.29133 -9.89825 -9.21713 -8.51776 -8.30644 -6.18475 -0.66312 0.04524 0.41071 0.56533 0.72081 1.36163 1.36776 1.45719 1.54391 2.16065 2.51394 2.80219 2.91788 3.12002 3.19328 3.40569 3.44312 3.84909 4.04944 4.08840 4.16247 4.27676 4.30929 4.48268 4.53698 4.73149 4.89312 4.91010 5.07033 5.13388 5.23261 5.48798 5.60477 5.63251 5.88884 5.97183 6.06009 6.92367 7.01341 7.67712 8.70415 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.042497 B = 0.002863 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.719592 B = 9776.892128 C =10415.557189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 S -0.086 6.086 3 C -0.218 4.218 4 C 0.169 3.831 5 N -0.520 5.520 6 C 0.360 3.640 7 C -0.148 4.148 8 C -0.015 4.015 9 C -0.208 4.208 10 C 0.141 3.859 11 O -0.216 6.216 12 C -0.417 4.417 13 H 0.107 0.893 14 C -0.018 4.018 15 N -0.914 5.914 16 Si 1.020 2.980 17 H -0.262 1.262 18 H -0.271 1.271 19 H -0.251 1.251 20 C -0.248 4.248 21 C -0.015 4.015 22 N -0.521 5.521 23 C 0.140 3.860 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.133 0.867 27 H 0.197 0.803 28 H 0.149 0.851 29 H 0.126 0.874 30 H 0.275 0.725 31 H 0.131 0.869 32 H 0.142 0.858 33 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.605 -23.992 0.256 25.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.317 4.317 2 S 0.154 5.846 3 C -0.335 4.335 4 C -0.004 4.004 5 N -0.233 5.233 6 C 0.096 3.904 7 C -0.151 4.151 8 C -0.035 4.035 9 C -0.227 4.227 10 C 0.088 3.912 11 O -0.121 6.121 12 C -0.493 4.493 13 H 0.125 0.875 14 C -0.217 4.217 15 N -0.551 5.551 16 Si 0.839 3.161 17 H -0.187 1.187 18 H -0.196 1.196 19 H -0.175 1.175 20 C -0.267 4.267 21 C -0.035 4.035 22 N -0.235 5.235 23 C -0.033 4.033 24 H 0.114 0.886 25 H 0.114 0.886 26 H 0.151 0.849 27 H 0.214 0.786 28 H 0.167 0.833 29 H 0.144 0.856 30 H 0.084 0.916 31 H 0.149 0.851 32 H 0.160 0.840 33 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -8.407 -23.760 0.251 25.205 hybrid contribution -1.206 1.096 -0.032 1.630 sum -9.613 -22.665 0.219 24.620 Atomic orbital electron populations 1.23906 0.91728 1.09243 1.06870 1.85462 1.09698 0.97717 1.91712 1.23829 0.99174 1.01467 1.09025 1.23407 0.95123 0.91795 0.90089 1.68376 1.36855 1.02992 1.15110 1.21136 0.84460 0.93630 0.91197 1.17845 0.93884 0.88003 1.15349 1.20956 0.95798 0.93927 0.92845 1.20369 0.98226 0.91738 1.12383 1.20056 0.94371 0.84831 0.91934 1.83928 1.36741 1.12093 1.79301 1.21928 0.87346 0.87309 1.52690 0.87547 1.26635 1.01199 0.98438 0.95433 1.70175 1.21455 1.15943 1.47485 0.84569 0.75946 0.76397 0.79223 1.18702 1.19565 1.17497 1.21187 0.95753 0.96924 1.12858 1.21018 0.99481 0.90615 0.92409 1.68290 1.20321 1.19900 1.15005 1.23766 1.00814 0.86812 0.91923 0.88571 0.88601 0.84863 0.78581 0.83317 0.85565 0.91560 0.85117 0.84005 0.78685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.18 113.37 1.04 0.16 16 2 S -0.09 -1.12 22.60 -56.49 -1.28 -2.39 16 3 C -0.22 -4.29 6.16 22.85 0.14 -4.15 16 4 C 0.17 3.82 11.09 84.94 0.94 4.76 16 5 N -0.52 -15.54 9.43 -188.69 -1.78 -17.32 16 6 C 0.36 11.94 7.55 137.45 1.04 12.98 16 7 C -0.15 -5.52 5.88 -20.03 -0.12 -5.64 16 8 C -0.02 -0.58 9.55 22.47 0.21 -0.37 16 9 C -0.21 -9.04 9.98 22.35 0.22 -8.81 16 10 C 0.14 7.02 6.65 22.65 0.15 7.17 16 11 O -0.22 -12.77 9.75 -21.72 -0.21 -12.98 16 12 C -0.42 -23.76 9.48 67.92 0.64 -23.11 16 13 H 0.11 5.53 5.19 -2.91 -0.02 5.51 16 14 C -0.02 -1.02 5.49 84.83 0.47 -0.55 16 15 N -0.91 -54.97 13.67 21.61 0.30 -54.67 16 16 Si 1.02 41.81 29.55 68.60 2.03 43.84 16 17 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 18 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 19 H -0.25 -9.56 7.11 99.48 0.71 -8.86 16 20 C -0.25 -10.97 9.15 22.36 0.20 -10.76 16 21 C -0.02 -0.59 9.55 22.47 0.21 -0.38 16 22 N -0.52 -15.41 9.43 -188.68 -1.78 -17.19 16 23 C 0.14 2.99 10.63 84.95 0.90 3.89 16 24 H 0.10 0.46 7.78 -2.39 -0.02 0.44 16 25 H 0.10 0.47 7.80 -2.39 -0.02 0.45 16 26 H 0.13 0.29 8.14 -2.39 -0.02 0.27 16 27 H 0.20 3.16 8.06 -2.91 -0.02 3.13 16 28 H 0.15 4.91 7.50 -2.91 -0.02 4.89 16 29 H 0.13 5.28 8.06 -2.91 -0.02 5.26 16 30 H 0.28 15.12 8.31 -92.70 -0.77 14.35 16 31 H 0.13 5.71 5.62 -2.91 -0.02 5.70 16 32 H 0.14 4.82 7.50 -2.91 -0.02 4.80 16 33 H 0.20 2.65 6.06 -2.91 -0.02 2.63 16 Total: -1.00 -70.96 306.11 4.50 -66.47 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 1.15 Total: 19.06 kcal Atomic # 6 Polarization: -30.87 SS G_CDS: 6.06 Total: -24.81 kcal Atomic # 7 Polarization: -85.92 SS G_CDS: -3.26 Total: -89.18 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -0.21 Total: -12.98 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Atomic # 16 Polarization: -1.12 SS G_CDS: -1.28 Total: -2.39 kcal Total: -70.96 4.50 -66.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243590646.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.372 kcal (2) G-P(sol) polarization free energy of solvation -70.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds