Wall clock time and date at job start Tue Mar 31 2020 05:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.76203 * 103.00355 * 2 1 4 4 C 1.39467 * 119.98556 * 180.02562 * 3 2 1 5 5 N 1.31781 * 120.01307 * 179.72146 * 4 3 2 6 6 C 1.33125 * 119.99592 * 0.50796 * 5 4 3 7 7 C 1.48216 * 120.01400 * 179.76480 * 6 5 4 8 8 C 1.39495 * 120.05406 * 359.72691 * 7 6 5 9 9 C 1.37813 * 119.94124 * 180.02562 * 8 7 6 10 10 C 1.39024 * 120.05620 * 0.27566 * 9 8 7 11 11 O 1.35683 * 119.94008 * 179.70382 * 10 9 8 12 12 C 1.34811 * 117.00658 * 354.44877 * 11 10 9 13 13 H 1.08004 * 119.99924 * 5.05503 * 12 11 10 14 14 C 1.38646 * 120.00690 * 185.05723 * 12 11 10 15 15 N 1.31559 * 119.99459 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00076 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46932 * 90.00626 * 16 14 12 18 18 H 1.48501 * 109.47154 * 209.99827 * 16 14 12 19 19 H 1.48498 * 109.47618 * 330.00374 * 16 14 12 20 20 C 1.39018 * 120.11185 * 359.44383 * 10 9 8 21 21 C 1.37814 * 120.05707 * 0.55627 * 20 10 9 22 22 C 1.39356 * 119.97330 * 359.49229 * 6 5 4 23 23 N 1.32047 * 119.97946 * 0.25089 * 22 6 5 24 24 H 1.09000 * 109.47252 * 59.99676 * 1 2 3 25 25 H 1.08995 * 109.47455 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46901 * 300.00108 * 1 2 3 27 27 H 1.07994 * 119.99374 * 359.97438 * 4 3 2 28 28 H 1.07994 * 120.03325 * 359.97438 * 8 7 6 29 29 H 1.08000 * 119.97465 * 179.97438 * 9 8 7 30 30 H 0.97001 * 119.99726 * 179.97438 * 15 14 12 31 31 H 1.08001 * 119.96609 * 180.25612 * 20 10 9 32 32 H 1.07995 * 120.02684 * 179.74381 * 21 20 10 33 33 H 1.08006 * 120.01095 * 180.23328 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5443 2.1242 -0.0005 5 7 3.8414 3.4080 -0.0061 6 6 2.8683 4.3164 -0.0010 7 6 3.2020 5.7605 -0.0019 8 6 4.5358 6.1693 -0.0025 9 6 4.8435 7.5126 -0.0028 10 6 3.8260 8.4600 0.0031 11 8 4.1317 9.7820 0.0088 12 6 5.4345 10.1086 0.1246 13 1 6.1873 9.3342 0.1253 14 6 5.8081 11.4385 0.2428 15 7 4.8910 12.3818 0.2425 16 14 7.6133 11.8908 0.4039 17 1 8.1919 12.1064 -0.9466 18 1 7.7422 13.1364 1.2021 19 1 8.3409 10.7894 1.0841 20 6 2.4961 8.0552 -0.0022 21 6 2.1831 6.7131 -0.0018 22 6 1.5356 3.9091 -0.0004 23 7 1.2390 2.6223 0.0000 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 4.3338 1.3873 -0.0005 28 1 5.3265 5.4338 -0.0017 29 1 5.8759 7.8297 -0.0028 30 1 5.1523 13.3122 0.3256 31 1 1.7076 8.7932 -0.0018 32 1 1.1497 6.3992 -0.0018 33 1 0.7456 4.6455 -0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243592179.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:37 Heat of formation + Delta-G solvation = 41.979630 kcal Electronic energy + Delta-G solvation = -18692.271035 eV Core-core repulsion = 15617.052270 eV Total energy + Delta-G solvation = -3075.218765 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.85451 -39.08407 -36.71994 -34.26055 -32.67290 -31.91598 -30.39605 -29.18191 -28.46554 -25.70939 -24.71238 -24.10788 -21.80303 -21.02563 -18.35937 -18.09760 -17.44723 -17.29696 -16.26913 -15.27391 -14.99515 -14.70846 -14.52068 -14.33883 -13.92796 -13.84309 -13.66747 -13.28984 -12.99306 -12.68008 -12.51686 -11.91212 -11.85265 -11.62325 -11.25617 -11.22701 -10.95392 -10.86063 -10.72818 -10.55342 -9.97124 -9.54631 -9.06626 -8.99681 -8.37597 -7.99201 -7.07114 -6.65418 -4.20112 0.50808 1.11665 1.26577 2.02858 2.11132 2.23727 3.03773 3.04997 3.10045 3.72303 3.82305 4.16016 4.37133 4.48935 4.50436 4.89950 4.92013 4.95661 5.02253 5.13649 5.19086 5.38985 5.54019 5.61357 5.65516 6.02264 6.22282 6.27425 6.48161 6.75309 6.84790 7.04276 7.11790 7.24209 7.28607 7.60684 7.79908 7.81465 8.79411 9.45500 10.51112 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.049774 B = 0.002802 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.408721 B = 9989.768716 C =10530.780175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 S -0.078 6.078 3 C 0.026 3.974 4 C 0.095 3.905 5 N -0.436 5.436 6 C 0.162 3.838 7 C -0.169 4.169 8 C -0.018 4.018 9 C -0.243 4.243 10 C 0.167 3.833 11 O -0.162 6.162 12 C -0.391 4.391 13 H 0.098 0.902 14 C 0.041 3.959 15 N -0.852 5.852 16 Si 0.945 3.055 17 H -0.271 1.271 18 H -0.276 1.276 19 H -0.265 1.265 20 C -0.195 4.195 21 C -0.045 4.045 22 C 0.051 3.949 23 N -0.438 5.438 24 H 0.086 0.914 25 H 0.102 0.898 26 H 0.086 0.914 27 H 0.169 0.831 28 H 0.122 0.878 29 H 0.132 0.868 30 H 0.274 0.726 31 H 0.124 0.876 32 H 0.118 0.882 33 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.290 -18.223 -0.240 18.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 S 0.159 5.841 3 C -0.224 4.224 4 C -0.073 4.073 5 N -0.151 5.151 6 C 0.024 3.976 7 C -0.172 4.172 8 C -0.038 4.038 9 C -0.262 4.262 10 C 0.111 3.889 11 O -0.063 6.063 12 C -0.467 4.467 13 H 0.115 0.885 14 C -0.165 4.165 15 N -0.485 5.485 16 Si 0.769 3.231 17 H -0.196 1.196 18 H -0.200 1.200 19 H -0.189 1.189 20 C -0.214 4.214 21 C -0.065 4.065 22 C -0.114 4.114 23 N -0.155 5.155 24 H 0.105 0.895 25 H 0.120 0.880 26 H 0.105 0.895 27 H 0.186 0.814 28 H 0.139 0.861 29 H 0.150 0.850 30 H 0.084 0.916 31 H 0.142 0.858 32 H 0.135 0.865 33 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -4.797 -18.762 -0.241 19.367 hybrid contribution 0.031 1.323 0.073 1.325 sum -4.766 -17.439 -0.168 18.079 Atomic orbital electron populations 1.23426 0.93721 1.05970 1.06693 1.85344 1.07871 0.98730 1.92194 1.23922 0.93883 0.99127 1.05492 1.23318 0.94336 0.93450 0.96197 1.68503 1.35435 1.00754 1.10432 1.20789 0.89725 0.94193 0.92917 1.17758 0.94200 0.87689 1.17583 1.20886 0.95043 0.95020 0.92824 1.21147 1.00066 0.92529 1.12480 1.19553 0.93220 0.84867 0.91296 1.83936 1.28856 1.17812 1.75687 1.21478 0.80098 0.93302 1.51800 0.88497 1.25392 1.00683 0.94408 0.96019 1.70037 1.33638 1.00878 1.43934 0.85643 0.79829 0.78755 0.78895 1.19625 1.20050 1.18918 1.20097 0.94146 0.95274 1.11880 1.20640 0.97404 0.91770 0.96645 1.23621 0.96747 0.92384 0.98617 1.68607 1.34322 1.02024 1.10532 0.89521 0.87956 0.89524 0.81408 0.86052 0.85034 0.91601 0.85841 0.86460 0.81142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.04 10.04 101.05 1.01 -0.03 16 2 S -0.08 -0.79 22.56 -107.50 -2.43 -3.22 16 3 C 0.03 0.34 7.00 -16.67 -0.12 0.22 16 4 C 0.10 1.28 10.98 -17.12 -0.19 1.09 16 5 N -0.44 -6.92 9.58 -9.41 -0.09 -7.01 16 6 C 0.16 2.60 6.72 -82.79 -0.56 2.04 16 7 C -0.17 -2.96 5.88 -104.86 -0.62 -3.58 16 8 C -0.02 -0.34 9.57 -39.27 -0.38 -0.72 16 9 C -0.24 -5.08 9.15 -39.45 -0.36 -5.44 16 10 C 0.17 3.82 6.65 -39.00 -0.26 3.56 16 11 O -0.16 -4.37 9.75 0.31 0.00 -4.37 16 12 C -0.39 -10.36 9.48 30.88 0.29 -10.07 16 13 H 0.10 2.37 5.19 -52.48 -0.27 2.09 16 14 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 15 N -0.85 -23.79 13.67 55.48 0.76 -23.03 16 16 Si 0.94 19.52 29.55 -169.99 -5.02 14.50 16 17 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 18 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 19 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 20 C -0.19 -3.81 9.98 -39.45 -0.39 -4.21 16 21 C -0.05 -0.75 9.42 -39.27 -0.37 -1.12 16 22 C 0.05 0.73 10.60 -17.04 -0.18 0.55 16 23 N -0.44 -6.12 9.58 -11.62 -0.11 -6.23 16 24 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 25 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 27 H 0.17 1.75 8.06 -52.49 -0.42 1.33 16 28 H 0.12 2.11 7.54 -52.49 -0.40 1.71 16 29 H 0.13 2.73 5.62 -52.49 -0.30 2.43 16 30 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 32 H 0.12 1.53 6.19 -52.49 -0.32 1.20 16 33 H 0.17 1.99 6.18 -52.48 -0.32 1.67 16 LS Contribution 306.56 15.07 4.62 4.62 Total: -1.00 -29.53 306.56 -7.34 -36.87 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -2.86 Total: 4.59 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: -2.21 Total: -16.73 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.56 Total: -36.27 kcal Atomic # 8 Polarization: -4.37 SS G_CDS: 0.00 Total: -4.37 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Atomic # 16 Polarization: -0.79 SS G_CDS: -2.43 Total: -3.22 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.53 -7.34 -36.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243592179.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.846 kcal (2) G-P(sol) polarization free energy of solvation -29.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds