Wall clock time and date at job start Tue Mar 31 2020 05:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.76203 * 103.00355 * 2 1 4 4 C 1.39467 * 119.98556 * 180.02562 * 3 2 1 5 5 N 1.31781 * 120.01307 * 179.72146 * 4 3 2 6 6 C 1.33125 * 119.99592 * 0.50796 * 5 4 3 7 7 C 1.48216 * 120.01400 * 179.76480 * 6 5 4 8 8 C 1.39495 * 120.05406 * 359.72691 * 7 6 5 9 9 C 1.37813 * 119.94124 * 180.02562 * 8 7 6 10 10 C 1.39024 * 120.05620 * 0.27566 * 9 8 7 11 11 O 1.35683 * 119.94008 * 179.70382 * 10 9 8 12 12 C 1.34811 * 117.00658 * 354.44877 * 11 10 9 13 13 H 1.08004 * 119.99924 * 5.05503 * 12 11 10 14 14 C 1.38646 * 120.00690 * 185.05723 * 12 11 10 15 15 N 1.31559 * 119.99459 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00076 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46932 * 90.00626 * 16 14 12 18 18 H 1.48501 * 109.47154 * 209.99827 * 16 14 12 19 19 H 1.48498 * 109.47618 * 330.00374 * 16 14 12 20 20 C 1.39018 * 120.11185 * 359.44383 * 10 9 8 21 21 C 1.37814 * 120.05707 * 0.55627 * 20 10 9 22 22 C 1.39356 * 119.97330 * 359.49229 * 6 5 4 23 23 N 1.32047 * 119.97946 * 0.25089 * 22 6 5 24 24 H 1.09000 * 109.47252 * 59.99676 * 1 2 3 25 25 H 1.08995 * 109.47455 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46901 * 300.00108 * 1 2 3 27 27 H 1.07994 * 119.99374 * 359.97438 * 4 3 2 28 28 H 1.07994 * 120.03325 * 359.97438 * 8 7 6 29 29 H 1.08000 * 119.97465 * 179.97438 * 9 8 7 30 30 H 0.97001 * 119.99726 * 179.97438 * 15 14 12 31 31 H 1.08001 * 119.96609 * 180.25612 * 20 10 9 32 32 H 1.07995 * 120.02684 * 179.74381 * 21 20 10 33 33 H 1.08006 * 120.01095 * 180.23328 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5443 2.1242 -0.0005 5 7 3.8414 3.4080 -0.0061 6 6 2.8683 4.3164 -0.0010 7 6 3.2020 5.7605 -0.0019 8 6 4.5358 6.1693 -0.0025 9 6 4.8435 7.5126 -0.0028 10 6 3.8260 8.4600 0.0031 11 8 4.1317 9.7820 0.0088 12 6 5.4345 10.1086 0.1246 13 1 6.1873 9.3342 0.1253 14 6 5.8081 11.4385 0.2428 15 7 4.8910 12.3818 0.2425 16 14 7.6133 11.8908 0.4039 17 1 8.1919 12.1064 -0.9466 18 1 7.7422 13.1364 1.2021 19 1 8.3409 10.7894 1.0841 20 6 2.4961 8.0552 -0.0022 21 6 2.1831 6.7131 -0.0018 22 6 1.5356 3.9091 -0.0004 23 7 1.2390 2.6223 0.0000 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 4.3338 1.3873 -0.0005 28 1 5.3265 5.4338 -0.0017 29 1 5.8759 7.8297 -0.0028 30 1 5.1523 13.3122 0.3256 31 1 1.7076 8.7932 -0.0018 32 1 1.1497 6.3992 -0.0018 33 1 0.7456 4.6455 -0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243592179.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:37 Heat of formation + Delta-G solvation = 23.844247 kcal Electronic energy + Delta-G solvation = -18693.057444 eV Core-core repulsion = 15617.052270 eV Total energy + Delta-G solvation = -3076.005174 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.01239 -40.71712 -38.32004 -35.42066 -34.42055 -33.28048 -31.93440 -30.01540 -29.70389 -27.50524 -25.89479 -25.40851 -23.32618 -22.51876 -19.99019 -19.23701 -18.94812 -18.52799 -17.71008 -16.44772 -16.14820 -16.11000 -16.09879 -15.59888 -15.57670 -15.19490 -14.65410 -14.41441 -14.20454 -14.07350 -13.60540 -13.53484 -13.31645 -12.88031 -12.75837 -12.59789 -12.39079 -12.28209 -12.13545 -11.59633 -11.26570 -11.17371 -10.74824 -10.21135 -9.89469 -9.23304 -8.52272 -8.34797 -6.18335 -0.68005 0.01047 0.36269 0.55834 0.77540 1.24770 1.35963 1.44485 1.52984 2.15409 2.48345 2.88933 3.00165 3.17672 3.30464 3.38439 3.45688 3.85075 4.00202 4.09552 4.18153 4.32389 4.36861 4.42629 4.52398 4.71616 4.87249 4.93735 5.08875 5.13648 5.22832 5.50083 5.59834 5.63607 5.97197 6.01359 6.13540 6.66518 6.92431 7.68282 8.69909 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.049774 B = 0.002802 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.408721 B = 9989.768716 C =10530.780175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 S -0.054 6.054 3 C 0.032 3.968 4 C 0.085 3.915 5 N -0.450 5.450 6 C 0.130 3.870 7 C -0.145 4.145 8 C -0.027 4.027 9 C -0.248 4.248 10 C 0.133 3.867 11 O -0.218 6.218 12 C -0.416 4.416 13 H 0.104 0.896 14 C -0.018 4.018 15 N -0.913 5.913 16 Si 1.018 2.982 17 H -0.263 1.263 18 H -0.270 1.270 19 H -0.254 1.254 20 C -0.200 4.200 21 C -0.034 4.034 22 C 0.063 3.937 23 N -0.447 5.447 24 H 0.085 0.915 25 H 0.131 0.869 26 H 0.085 0.915 27 H 0.196 0.804 28 H 0.134 0.866 29 H 0.124 0.876 30 H 0.275 0.725 31 H 0.130 0.870 32 H 0.164 0.836 33 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.319 -22.496 -0.200 23.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 S 0.184 5.816 3 C -0.219 4.219 4 C -0.084 4.084 5 N -0.165 5.165 6 C -0.009 4.009 7 C -0.147 4.147 8 C -0.046 4.046 9 C -0.267 4.267 10 C 0.081 3.919 11 O -0.123 6.123 12 C -0.492 4.492 13 H 0.122 0.878 14 C -0.217 4.217 15 N -0.550 5.550 16 Si 0.837 3.163 17 H -0.187 1.187 18 H -0.195 1.195 19 H -0.177 1.177 20 C -0.219 4.219 21 C -0.053 4.053 22 C -0.100 4.100 23 N -0.165 5.165 24 H 0.104 0.896 25 H 0.149 0.851 26 H 0.104 0.896 27 H 0.213 0.787 28 H 0.152 0.848 29 H 0.142 0.858 30 H 0.084 0.916 31 H 0.148 0.852 32 H 0.182 0.818 33 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -5.851 -23.116 -0.205 23.845 hybrid contribution 0.047 1.850 0.042 1.851 sum -5.804 -21.265 -0.164 22.044 Atomic orbital electron populations 1.23582 0.91840 1.07848 1.06562 1.85408 1.09841 0.95531 1.90868 1.24539 0.93994 1.00934 1.02392 1.23788 0.95468 0.93018 0.96115 1.68400 1.36150 1.01903 1.10034 1.20620 0.90840 0.93204 0.96206 1.18088 0.93738 0.89264 1.13615 1.21030 0.96393 0.94089 0.93120 1.21197 0.99522 0.93372 1.12621 1.20100 0.95036 0.84299 0.92480 1.83921 1.28985 1.19718 1.79633 1.21872 0.80637 0.94010 1.52653 0.87850 1.26582 1.05517 0.94015 0.95538 1.70167 1.36032 1.01202 1.47618 0.84597 0.73902 0.78625 0.79212 1.18741 1.19489 1.17718 1.20397 0.93105 0.96928 1.11449 1.21048 0.99600 0.90083 0.94553 1.23961 0.96414 0.93168 0.96478 1.68764 1.34384 1.01957 1.11419 0.89623 0.85107 0.89634 0.78724 0.84808 0.85825 0.91586 0.85220 0.81839 0.78642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 10.04 113.37 1.14 -0.39 16 2 S -0.05 -0.87 22.56 -56.49 -1.27 -2.15 16 3 C 0.03 0.72 7.00 84.84 0.59 1.31 16 4 C 0.08 1.99 10.98 85.00 0.93 2.93 16 5 N -0.45 -13.07 9.58 -183.69 -1.76 -14.83 16 6 C 0.13 3.80 6.72 41.87 0.28 4.08 16 7 C -0.14 -4.78 5.88 -20.02 -0.12 -4.89 16 8 C -0.03 -1.01 9.57 22.47 0.22 -0.79 16 9 C -0.25 -10.73 9.15 22.36 0.20 -10.52 16 10 C 0.13 6.37 6.65 22.65 0.15 6.52 16 11 O -0.22 -12.60 9.75 -21.81 -0.21 -12.81 16 12 C -0.42 -23.52 9.48 67.92 0.64 -22.88 16 13 H 0.10 5.38 5.19 -2.91 -0.02 5.37 16 14 C -0.02 -0.98 5.49 84.83 0.47 -0.52 16 15 N -0.91 -54.42 13.67 21.61 0.30 -54.13 16 16 Si 1.02 41.77 29.55 68.60 2.03 43.80 16 17 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 18 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 19 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 20 C -0.20 -7.86 9.98 22.36 0.22 -7.64 16 21 C -0.03 -1.06 9.42 22.47 0.21 -0.85 16 22 C 0.06 1.54 10.60 84.93 0.90 2.44 16 23 N -0.45 -10.75 9.58 -190.66 -1.83 -12.58 16 24 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.20 3.35 8.06 -2.91 -0.02 3.33 16 28 H 0.13 4.55 7.54 -2.91 -0.02 4.52 16 29 H 0.12 5.43 5.62 -2.91 -0.02 5.41 16 30 H 0.28 14.98 8.31 -92.71 -0.77 14.21 16 31 H 0.13 4.86 8.06 -2.91 -0.02 4.84 16 32 H 0.16 3.54 6.19 -2.91 -0.02 3.52 16 33 H 0.20 3.60 6.18 -2.91 -0.02 3.59 16 Total: -1.00 -68.92 306.56 4.25 -64.68 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 1.16 Total: 19.22 kcal Atomic # 6 Polarization: -37.05 SS G_CDS: 5.84 Total: -31.20 kcal Atomic # 7 Polarization: -78.24 SS G_CDS: -3.29 Total: -81.54 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -0.21 Total: -12.81 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Atomic # 16 Polarization: -0.87 SS G_CDS: -1.27 Total: -2.15 kcal Total: -68.92 4.25 -64.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243592179.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.520 kcal (2) G-P(sol) polarization free energy of solvation -68.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds