Wall clock time and date at job start Tue Mar 31 2020 05:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.36225 * 119.94020 * 2 1 4 4 C 1.40939 * 119.88618 * 179.74472 * 3 2 1 5 5 C 1.40990 * 120.11226 * 180.23287 * 4 3 2 6 6 H 1.08000 * 119.99607 * 24.71075 * 5 4 3 7 7 C 1.39978 * 119.99760 * 204.71163 * 5 4 3 8 8 N 1.30815 * 120.00126 * 17.98521 * 7 5 4 9 9 Si 1.86797 * 119.99830 * 197.98028 * 7 5 4 10 10 H 1.48507 * 109.46929 * 90.00345 * 9 7 5 11 11 H 1.48497 * 109.47141 * 210.00437 * 9 7 5 12 12 H 1.48497 * 109.47126 * 330.00214 * 9 7 5 13 13 C 1.40970 * 119.77321 * 0.25622 * 4 3 2 14 14 C 1.36189 * 119.88732 * 359.97438 * 13 4 3 15 15 C 1.39992 * 119.94444 * 180.24577 * 2 1 3 16 16 C 1.47827 * 119.88893 * 0.02562 * 15 2 1 17 17 C 1.40162 * 120.18900 * 270.24260 * 16 15 2 18 18 O 1.35785 * 120.12718 * 359.95780 * 17 16 15 19 19 C 1.38510 * 119.73538 * 179.97438 * 17 16 15 20 20 C 1.38249 * 120.11801 * 359.97438 * 19 17 16 21 21 C 1.38429 * 120.38465 * 0.02562 * 20 19 17 22 22 C 1.38051 * 120.25708 * 359.73848 * 21 20 19 23 23 Cl 1.73610 * 120.05950 * 180.27875 * 22 21 20 24 24 H 1.09006 * 109.46863 * 90.00220 * 1 2 3 25 25 H 1.08999 * 109.46762 * 209.99935 * 1 2 3 26 26 H 1.08995 * 109.46918 * 329.99846 * 1 2 3 27 27 H 1.08000 * 120.05858 * 0.02711 * 3 2 1 28 28 H 0.97002 * 120.00306 * 179.97438 * 8 7 5 29 29 H 1.08003 * 120.05827 * 179.97438 * 13 4 3 30 30 H 1.08009 * 119.94083 * 180.02562 * 14 13 4 31 31 H 0.96702 * 113.99873 * 90.00007 * 18 17 16 32 32 H 1.07998 * 119.93485 * 180.02562 * 19 17 16 33 33 H 1.07994 * 119.81100 * 179.97438 * 20 19 17 34 34 H 1.07995 * 119.87124 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1870 1.1804 0.0000 4 6 3.5963 1.1791 0.0054 5 6 4.3048 2.3981 0.0104 6 1 3.8400 3.2912 0.4013 7 6 5.6106 2.4507 -0.4912 8 7 6.0506 1.4970 -1.2711 9 14 6.7247 3.8828 -0.0472 10 1 7.4786 3.5581 1.1904 11 1 7.6790 4.1303 -1.1576 12 1 5.9021 5.0983 0.1788 13 6 4.2952 -0.0451 0.0054 14 6 3.6062 -1.2199 0.0006 15 6 2.2059 -1.2130 -0.0052 16 6 1.4630 -2.4911 -0.0113 17 6 1.1039 -3.1033 1.1974 18 8 1.4378 -2.5252 2.3798 19 6 0.4075 -4.3005 1.1807 20 6 0.0676 -4.8886 -0.0234 21 6 0.4197 -4.2883 -1.2199 22 6 1.1097 -3.0925 -1.2217 23 17 1.5424 -2.3404 -2.7254 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5138 27 1 1.6469 2.1157 0.0004 28 1 6.9553 1.5336 -1.6190 29 1 5.3752 -0.0515 0.0091 30 1 4.1408 -2.1584 0.0010 31 1 0.7710 -1.9133 2.7205 32 1 0.1288 -4.7748 2.1101 33 1 -0.4751 -5.8223 -0.0306 34 1 0.1496 -4.7547 -2.1558 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244044644.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:08 Heat of formation + Delta-G solvation = -17.585349 kcal Electronic energy + Delta-G solvation = -19931.263083 eV Core-core repulsion = 16819.124930 eV Total energy + Delta-G solvation = -3112.138154 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.64443 -37.50065 -36.63361 -35.60683 -34.08216 -31.50322 -31.16785 -29.65760 -28.72667 -25.84204 -25.16417 -22.27536 -22.18689 -20.42791 -19.84919 -18.09110 -16.92363 -16.20581 -15.66754 -15.44522 -15.08890 -14.25207 -14.04252 -13.74422 -13.63713 -12.83789 -12.66858 -12.61116 -12.32092 -11.96232 -11.78184 -11.56885 -11.52648 -11.11078 -10.97777 -10.94586 -10.73772 -10.39987 -10.33523 -10.15085 -9.66104 -9.43377 -9.15150 -8.39204 -8.23951 -7.43487 -7.20234 -6.79460 -4.36702 1.34629 1.45243 2.60036 2.70069 3.05753 3.08968 3.10113 3.17286 3.72971 3.90616 4.50134 4.54919 5.02822 5.21150 5.34563 5.53850 5.66297 5.84844 5.92195 5.98298 6.12505 6.26467 6.37708 6.43761 6.48593 6.54947 6.67802 6.84338 6.97930 7.03880 7.25069 7.36626 7.64037 7.86770 7.98014 8.05580 8.11937 8.27636 8.62661 8.86803 8.97508 10.14078 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.024357 B = 0.004937 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.297492 B = 5670.385456 C = 6025.331351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.036 4.036 3 C -0.226 4.226 4 C 0.121 3.879 5 C -0.458 4.458 6 H 0.078 0.922 7 C 0.077 3.923 8 N -0.786 5.786 9 Si 0.908 3.092 10 H -0.267 1.267 11 H -0.278 1.278 12 H -0.262 1.262 13 C -0.169 4.169 14 C -0.063 4.063 15 C -0.192 4.192 16 C -0.002 4.002 17 C 0.115 3.885 18 O -0.483 6.483 19 C -0.149 4.149 20 C -0.113 4.113 21 C -0.127 4.127 22 C -0.021 4.021 23 Cl -0.058 7.058 24 H 0.056 0.944 25 H 0.044 0.956 26 H 0.053 0.947 27 H 0.091 0.909 28 H 0.281 0.719 29 H 0.116 0.884 30 H 0.083 0.917 31 H 0.386 0.614 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.009 -8.108 1.678 12.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.036 4.036 3 C -0.246 4.246 4 C 0.119 3.881 5 C -0.487 4.487 6 H 0.096 0.904 7 C -0.142 4.142 8 N -0.410 5.410 9 Si 0.732 3.268 10 H -0.192 1.192 11 H -0.203 1.203 12 H -0.186 1.186 13 C -0.189 4.189 14 C -0.082 4.082 15 C -0.193 4.193 16 C -0.003 4.003 17 C 0.070 3.930 18 O -0.293 6.293 19 C -0.167 4.167 20 C -0.131 4.131 21 C -0.146 4.146 22 C -0.048 4.048 23 Cl -0.029 7.029 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.110 0.890 28 H 0.092 0.908 29 H 0.134 0.866 30 H 0.101 0.899 31 H 0.242 0.758 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.244 -8.427 1.334 11.865 hybrid contribution 0.262 0.885 -0.023 0.923 sum -7.982 -7.542 1.312 11.060 Atomic orbital electron populations 1.20691 0.94165 1.00373 1.00892 1.18923 0.93011 0.92554 0.99097 1.20452 0.94217 0.95142 1.14757 1.17624 0.90838 0.93129 0.86531 1.19581 0.97537 0.96129 1.35484 0.90364 1.25946 0.98488 0.97236 0.92562 1.69836 1.17662 1.31892 1.21611 0.86320 0.79789 0.81585 0.79103 1.19196 1.20294 1.18573 1.20916 0.99612 0.91290 1.07055 1.20261 0.92118 0.96783 0.99038 1.17474 0.92290 0.88589 1.20957 1.19264 0.95845 0.95280 0.89916 1.18585 0.96653 0.92571 0.85186 1.84788 1.47734 1.62457 1.34280 1.21390 0.99935 0.96722 0.98682 1.20825 1.00955 1.00003 0.91315 1.20956 1.00112 0.94595 0.98923 1.21191 1.01100 0.94834 0.87628 1.98373 1.91829 1.82007 1.30654 0.92550 0.93659 0.92764 0.89032 0.90760 0.86570 0.89871 0.75800 0.85545 0.85467 0.85430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.83 9.60 36.01 0.35 -1.49 16 2 C -0.04 -0.77 5.87 -104.69 -0.61 -1.39 16 3 C -0.23 -5.46 9.36 -39.28 -0.37 -5.82 16 4 C 0.12 3.21 5.57 -106.80 -0.60 2.61 16 5 C -0.46 -12.05 9.03 -37.89 -0.34 -12.39 16 6 H 0.08 1.98 7.91 -52.49 -0.42 1.56 16 7 C 0.08 1.91 5.13 -17.33 -0.09 1.82 16 8 N -0.79 -20.28 10.96 55.55 0.61 -19.67 16 9 Si 0.91 18.54 29.60 -169.99 -5.03 13.51 16 10 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 11 H -0.28 -5.56 7.11 56.52 0.40 -5.15 16 12 H -0.26 -5.28 7.11 56.52 0.40 -4.87 16 13 C -0.17 -4.43 8.63 -39.28 -0.34 -4.77 16 14 C -0.06 -1.52 9.71 -39.64 -0.38 -1.91 16 15 C -0.19 -4.16 3.92 -104.64 -0.41 -4.57 16 16 C 0.00 -0.03 3.86 -104.71 -0.40 -0.44 16 17 C 0.12 1.90 6.39 -38.76 -0.25 1.65 16 18 O -0.48 -7.87 12.96 -19.07 -0.25 -8.11 16 19 C -0.15 -2.00 9.97 -39.48 -0.39 -2.39 16 20 C -0.11 -1.38 10.03 -39.51 -0.40 -1.78 16 21 C -0.13 -1.76 9.81 -39.58 -0.39 -2.15 16 22 C -0.02 -0.35 6.35 -39.10 -0.25 -0.60 16 23 Cl -0.06 -1.04 28.04 -51.86 -1.45 -2.49 16 24 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.04 0.72 6.81 -51.93 -0.35 0.37 16 26 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 27 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 28 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 29 H 0.12 3.15 6.16 -52.48 -0.32 2.83 16 30 H 0.08 1.92 8.06 -52.48 -0.42 1.50 16 31 H 0.39 4.71 9.06 45.56 0.41 5.12 16 32 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 33 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 34 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 310.86 15.07 4.68 4.68 Total: -1.00 -28.57 310.86 -9.08 -37.65 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -2.77 Total: 8.05 kcal Atomic # 6 Polarization: -28.74 SS G_CDS: -4.88 Total: -33.62 kcal Atomic # 7 Polarization: -20.28 SS G_CDS: 0.61 Total: -19.67 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: -0.25 Total: -8.11 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.45 Total: -2.49 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.57 -9.08 -37.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244044644.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.065 kcal (2) G-P(sol) polarization free energy of solvation -28.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds