Wall clock time and date at job start Tue Mar 31 2020 05:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.36225 * 119.94020 * 2 1 4 4 C 1.40939 * 119.88618 * 179.74472 * 3 2 1 5 5 C 1.40990 * 120.11226 * 180.23287 * 4 3 2 6 6 H 1.08000 * 119.99607 * 24.71075 * 5 4 3 7 7 C 1.39978 * 119.99760 * 204.71163 * 5 4 3 8 8 N 1.30815 * 120.00126 * 17.98521 * 7 5 4 9 9 Si 1.86797 * 119.99830 * 197.98028 * 7 5 4 10 10 H 1.48507 * 109.46929 * 90.00345 * 9 7 5 11 11 H 1.48497 * 109.47141 * 210.00437 * 9 7 5 12 12 H 1.48497 * 109.47126 * 330.00214 * 9 7 5 13 13 C 1.40970 * 119.77321 * 0.25622 * 4 3 2 14 14 C 1.36189 * 119.88732 * 359.97438 * 13 4 3 15 15 C 1.39992 * 119.94444 * 180.24577 * 2 1 3 16 16 C 1.47827 * 119.88893 * 0.02562 * 15 2 1 17 17 C 1.40162 * 120.18900 * 270.24260 * 16 15 2 18 18 O 1.35785 * 120.12718 * 359.95780 * 17 16 15 19 19 C 1.38510 * 119.73538 * 179.97438 * 17 16 15 20 20 C 1.38249 * 120.11801 * 359.97438 * 19 17 16 21 21 C 1.38429 * 120.38465 * 0.02562 * 20 19 17 22 22 C 1.38051 * 120.25708 * 359.73848 * 21 20 19 23 23 Cl 1.73610 * 120.05950 * 180.27875 * 22 21 20 24 24 H 1.09006 * 109.46863 * 90.00220 * 1 2 3 25 25 H 1.08999 * 109.46762 * 209.99935 * 1 2 3 26 26 H 1.08995 * 109.46918 * 329.99846 * 1 2 3 27 27 H 1.08000 * 120.05858 * 0.02711 * 3 2 1 28 28 H 0.97002 * 120.00306 * 179.97438 * 8 7 5 29 29 H 1.08003 * 120.05827 * 179.97438 * 13 4 3 30 30 H 1.08009 * 119.94083 * 180.02562 * 14 13 4 31 31 H 0.96702 * 113.99873 * 90.00007 * 18 17 16 32 32 H 1.07998 * 119.93485 * 180.02562 * 19 17 16 33 33 H 1.07994 * 119.81100 * 179.97438 * 20 19 17 34 34 H 1.07995 * 119.87124 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1870 1.1804 0.0000 4 6 3.5963 1.1791 0.0054 5 6 4.3048 2.3981 0.0104 6 1 3.8400 3.2912 0.4013 7 6 5.6106 2.4507 -0.4912 8 7 6.0506 1.4970 -1.2711 9 14 6.7247 3.8828 -0.0472 10 1 7.4786 3.5581 1.1904 11 1 7.6790 4.1303 -1.1576 12 1 5.9021 5.0983 0.1788 13 6 4.2952 -0.0451 0.0054 14 6 3.6062 -1.2199 0.0006 15 6 2.2059 -1.2130 -0.0052 16 6 1.4630 -2.4911 -0.0113 17 6 1.1039 -3.1033 1.1974 18 8 1.4378 -2.5252 2.3798 19 6 0.4075 -4.3005 1.1807 20 6 0.0676 -4.8886 -0.0234 21 6 0.4197 -4.2883 -1.2199 22 6 1.1097 -3.0925 -1.2217 23 17 1.5424 -2.3404 -2.7254 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5138 27 1 1.6469 2.1157 0.0004 28 1 6.9553 1.5336 -1.6190 29 1 5.3752 -0.0515 0.0091 30 1 4.1408 -2.1584 0.0010 31 1 0.7710 -1.9133 2.7205 32 1 0.1288 -4.7748 2.1101 33 1 -0.4751 -5.8223 -0.0306 34 1 0.1496 -4.7547 -2.1558 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244044644.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:08 Heat of formation + Delta-G solvation = -33.038458 kcal Electronic energy + Delta-G solvation = -19931.933181 eV Core-core repulsion = 16819.124930 eV Total energy + Delta-G solvation = -3112.808251 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.94661 -39.21781 -37.88834 -36.86524 -35.88721 -33.16458 -32.81707 -30.88439 -30.28064 -27.55239 -26.83211 -23.70997 -23.38688 -22.20023 -21.55482 -19.30986 -18.80535 -17.54582 -17.14074 -16.86197 -16.47043 -15.79485 -15.52632 -15.25716 -15.13494 -14.33219 -14.28811 -13.92710 -13.72443 -13.67147 -13.31000 -13.13520 -12.82794 -12.75241 -12.63840 -12.29495 -12.18907 -12.14135 -11.75099 -11.59666 -11.37500 -11.20615 -11.00398 -9.56190 -9.50067 -9.33245 -9.04897 -8.65197 -6.32772 0.20432 0.27029 0.91444 1.20338 1.32243 1.36436 1.49932 1.50174 2.19158 2.59969 2.69286 3.36513 3.70147 3.94170 4.09726 4.32430 4.34277 4.40313 4.44709 4.65241 4.73904 4.86401 4.89509 5.04071 5.08036 5.14257 5.31378 5.33368 5.37018 5.46327 5.52984 5.75516 5.77378 6.04893 6.14421 6.22822 6.38915 6.70508 6.88622 6.93446 7.06014 8.31131 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.024357 B = 0.004937 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.297492 B = 5670.385456 C = 6025.331351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.039 4.039 3 C -0.241 4.241 4 C 0.089 3.911 5 C -0.497 4.497 6 H 0.077 0.923 7 C 0.035 3.965 8 N -0.823 5.823 9 Si 0.982 3.018 10 H -0.263 1.263 11 H -0.268 1.268 12 H -0.256 1.256 13 C -0.193 4.193 14 C -0.078 4.078 15 C -0.166 4.166 16 C -0.042 4.042 17 C 0.107 3.893 18 O -0.501 6.501 19 C -0.139 4.139 20 C -0.091 4.091 21 C -0.124 4.124 22 C -0.034 4.034 23 Cl -0.080 7.080 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.096 0.904 28 H 0.288 0.712 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.402 0.598 32 H 0.158 0.842 33 H 0.173 0.827 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.222 -10.010 2.366 15.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.039 4.039 3 C -0.261 4.261 4 C 0.087 3.913 5 C -0.526 4.526 6 H 0.095 0.905 7 C -0.180 4.180 8 N -0.449 5.449 9 Si 0.803 3.197 10 H -0.187 1.187 11 H -0.193 1.193 12 H -0.180 1.180 13 C -0.212 4.212 14 C -0.097 4.097 15 C -0.167 4.167 16 C -0.043 4.043 17 C 0.062 3.938 18 O -0.313 6.313 19 C -0.158 4.158 20 C -0.109 4.109 21 C -0.142 4.142 22 C -0.061 4.061 23 Cl -0.051 7.051 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.114 0.886 28 H 0.098 0.902 29 H 0.113 0.887 30 H 0.101 0.899 31 H 0.260 0.740 32 H 0.175 0.825 33 H 0.191 0.809 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -10.483 -10.335 2.027 14.859 hybrid contribution 0.771 1.238 -0.201 1.472 sum -9.712 -9.097 1.826 13.432 Atomic orbital electron populations 1.20664 0.90804 1.02134 1.01698 1.19373 0.95517 0.91676 0.97372 1.20671 0.93659 0.96521 1.15203 1.17938 0.92159 0.93409 0.87785 1.19808 0.99147 0.96211 1.37468 0.90525 1.26799 0.99390 1.00051 0.91762 1.69903 1.18339 1.33959 1.22659 0.85208 0.77609 0.77987 0.78937 1.18727 1.19271 1.17966 1.20816 0.98792 0.92350 1.09247 1.20427 0.93735 0.95982 0.99514 1.17731 0.91432 0.90635 1.16918 1.19166 0.98483 0.94917 0.91769 1.18744 0.97248 0.93649 0.84192 1.84749 1.49112 1.63110 1.34303 1.21719 0.98298 0.95107 1.00647 1.21363 0.98950 1.00674 0.89869 1.21305 0.98786 0.93142 1.00989 1.21316 1.02414 0.96158 0.86200 1.98367 1.92181 1.82597 1.31924 0.92052 0.91677 0.91207 0.88573 0.90184 0.88733 0.89890 0.74028 0.82467 0.80923 0.82926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.22 9.60 71.24 0.68 -2.54 16 2 C -0.04 -1.71 5.87 -19.91 -0.12 -1.82 16 3 C -0.24 -12.02 9.36 22.46 0.21 -11.81 16 4 C 0.09 4.98 5.57 -21.27 -0.12 4.87 16 5 C -0.50 -27.54 9.03 23.37 0.21 -27.33 16 6 H 0.08 4.08 7.91 -2.91 -0.02 4.05 16 7 C 0.04 1.83 5.13 85.27 0.44 2.26 16 8 N -0.82 -44.73 10.96 21.83 0.24 -44.49 16 9 Si 0.98 39.20 29.60 68.60 2.03 41.23 16 10 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 11 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 12 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 13 C -0.19 -10.71 8.63 22.46 0.19 -10.51 16 14 C -0.08 -3.92 9.71 22.23 0.22 -3.70 16 15 C -0.17 -7.26 3.92 -19.88 -0.08 -7.34 16 16 C -0.04 -1.51 3.86 -19.92 -0.08 -1.58 16 17 C 0.11 3.23 6.39 22.80 0.15 3.38 16 18 O -0.50 -15.42 12.96 -91.14 -1.18 -16.60 16 19 C -0.14 -3.08 9.97 22.34 0.22 -2.85 16 20 C -0.09 -1.71 10.03 22.32 0.22 -1.49 16 21 C -0.12 -2.93 9.81 22.27 0.22 -2.71 16 22 C -0.03 -1.10 6.35 22.58 0.14 -0.96 16 23 Cl -0.08 -2.83 28.04 -2.72 -0.08 -2.91 16 24 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 25 H 0.06 1.91 6.81 -2.39 -0.02 1.90 16 26 H 0.07 2.10 8.08 -2.39 -0.02 2.08 16 27 H 0.10 4.55 8.06 -2.91 -0.02 4.53 16 28 H 0.29 14.14 8.30 -92.71 -0.77 13.37 16 29 H 0.09 5.54 6.16 -2.91 -0.02 5.52 16 30 H 0.08 4.03 8.06 -2.91 -0.02 4.01 16 31 H 0.40 9.03 9.06 -74.06 -0.67 8.36 16 32 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 33 H 0.17 1.80 8.06 -2.91 -0.02 1.78 16 34 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -66.09 310.86 4.00 -62.09 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: 0.47 Total: 24.82 kcal Atomic # 6 Polarization: -66.67 SS G_CDS: 2.52 Total: -64.15 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: 0.24 Total: -44.49 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -1.18 Total: -16.60 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Atomic # 17 Polarization: -2.83 SS G_CDS: -0.08 Total: -2.91 kcal Total: -66.09 4.00 -62.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244044644.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.053 kcal (2) G-P(sol) polarization free energy of solvation -66.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds