Wall clock time and date at job start Tue Mar 31 2020 05:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36222 * 120.05945 * 2 1 4 4 C 1.39998 * 120.11861 * 180.02562 * 3 2 1 5 5 C 1.47823 * 119.88856 * 180.02562 * 4 3 2 6 6 C 1.40159 * 120.18828 * 244.97954 * 5 4 3 7 7 O 1.35781 * 120.13453 * 359.95909 * 6 5 4 8 8 C 1.38522 * 119.73278 * 179.97438 * 6 5 4 9 9 C 1.38247 * 120.11519 * 0.02562 * 8 6 5 10 10 C 1.38419 * 120.38649 * 359.97438 * 9 8 6 11 11 C 1.38057 * 120.26309 * 359.78888 * 10 9 8 12 12 Cl 1.73600 * 120.06394 * 180.23092 * 11 10 9 13 13 C 1.40038 * 120.22290 * 0.02562 * 4 3 2 14 14 C 1.36196 * 120.11444 * 359.97438 * 13 4 3 15 15 C 1.40941 * 120.05593 * 180.02562 * 2 1 3 16 16 C 1.40982 * 120.10989 * 0.25510 * 15 2 1 17 17 H 1.07992 * 120.00326 * 333.34064 * 16 15 2 18 18 C 1.39982 * 119.99610 * 153.33850 * 16 15 2 19 19 N 1.30821 * 120.00475 * 343.84618 * 18 16 15 20 20 Si 1.86800 * 119.99776 * 163.84376 * 18 16 15 21 21 H 1.48495 * 109.47464 * 59.99978 * 20 18 16 22 22 H 1.48501 * 109.47101 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47133 * 300.00274 * 20 18 16 24 24 H 1.08999 * 109.47171 * 269.98133 * 1 2 3 25 25 H 1.08998 * 109.46938 * 29.97497 * 1 2 3 26 26 H 1.09001 * 109.47001 * 149.97890 * 1 2 3 27 27 H 1.08008 * 119.94077 * 0.04336 * 3 2 1 28 28 H 0.96696 * 113.99978 * 89.99731 * 7 6 5 29 29 H 1.08005 * 119.93731 * 180.02562 * 8 6 5 30 30 H 1.07995 * 119.80519 * 180.02562 * 9 8 6 31 31 H 1.08002 * 119.87341 * 180.02562 * 10 9 8 32 32 H 1.07993 * 119.94689 * 179.97438 * 13 4 3 33 33 H 1.07997 * 120.06095 * 180.02562 * 14 13 4 34 34 H 0.96996 * 120.00200 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1893 1.1790 0.0000 4 6 3.5893 1.1805 -0.0005 5 6 4.3246 2.4628 0.0000 6 6 5.1193 2.8201 -1.0978 7 8 5.2179 1.9890 -2.1671 8 6 5.8038 4.0243 -1.0876 9 6 5.7038 4.8698 0.0017 10 6 4.9204 4.5218 1.0885 11 6 4.2275 3.3277 1.0928 12 17 3.2417 2.8992 2.4561 13 6 4.2955 -0.0289 -0.0016 14 6 3.6227 -1.2130 -0.0016 15 6 2.2129 -1.2199 -0.0005 16 6 1.5115 -2.4429 -0.0065 17 1 0.5163 -2.4966 0.4091 18 6 2.1053 -3.5875 -0.5513 19 7 3.1527 -3.4750 -1.3270 20 14 1.4021 -5.2757 -0.1706 21 1 -0.0050 -5.3433 -0.6404 22 1 2.2061 -6.3145 -0.8631 23 1 1.4464 -5.5113 1.2950 24 1 -0.3633 -0.0003 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6493 2.1144 0.0007 28 1 4.5518 2.1462 -2.8501 29 1 6.4168 4.3031 -1.9320 30 1 6.2393 5.8076 0.0042 31 1 4.8478 5.1888 1.9349 32 1 5.3754 -0.0225 -0.0025 33 1 4.1681 -2.1451 -0.0021 34 1 3.5643 -4.2682 -1.7042 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244049222.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:35 Heat of formation + Delta-G solvation = -18.246968 kcal Electronic energy + Delta-G solvation = -19784.497613 eV Core-core repulsion = 16672.330770 eV Total energy + Delta-G solvation = -3112.166843 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.53478 -37.58298 -36.61421 -35.60556 -33.88634 -32.09587 -30.63335 -29.57783 -28.60418 -26.15935 -24.82728 -22.38356 -22.19410 -20.54976 -19.43190 -18.00375 -17.23194 -16.08229 -15.60975 -15.42323 -15.06101 -14.15962 -14.08375 -13.71941 -13.59826 -12.78254 -12.64483 -12.52300 -12.30921 -11.78072 -11.73545 -11.51804 -11.19762 -11.15782 -11.06120 -10.96213 -10.77196 -10.39530 -10.27396 -10.16840 -9.53985 -9.39422 -9.24832 -8.37434 -8.30200 -7.36038 -7.19007 -6.80725 -4.38139 1.37339 1.43250 2.58003 2.72088 3.03408 3.05688 3.12405 3.16194 3.78331 3.88165 4.54146 4.58215 5.05395 5.23615 5.34561 5.56566 5.66349 5.88822 6.07030 6.25526 6.32058 6.41965 6.46033 6.49348 6.65075 6.70397 6.75858 6.87680 6.99192 7.05604 7.26441 7.38380 7.65776 7.87021 8.01368 8.05064 8.11330 8.27141 8.59536 8.83927 8.95253 10.11340 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.023477 B = 0.004960 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.362066 B = 5644.128842 C = 6277.445779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.202 4.202 3 C -0.052 4.052 4 C -0.200 4.200 5 C -0.005 4.005 6 C 0.112 3.888 7 O -0.483 6.483 8 C -0.145 4.145 9 C -0.118 4.118 10 C -0.124 4.124 11 C -0.026 4.026 12 Cl -0.063 7.063 13 C -0.061 4.061 14 C -0.169 4.169 15 C 0.125 3.875 16 C -0.452 4.452 17 H 0.081 0.919 18 C 0.075 3.925 19 N -0.784 5.784 20 Si 0.908 3.092 21 H -0.265 1.265 22 H -0.278 1.278 23 H -0.263 1.263 24 H 0.040 0.960 25 H 0.036 0.964 26 H 0.060 0.940 27 H 0.085 0.915 28 H 0.387 0.613 29 H 0.126 0.874 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.085 0.915 33 H 0.116 0.884 34 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.153 10.522 0.858 10.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.203 4.203 3 C -0.071 4.071 4 C -0.201 4.201 5 C -0.006 4.006 6 C 0.066 3.934 7 O -0.292 6.292 8 C -0.164 4.164 9 C -0.136 4.136 10 C -0.143 4.143 11 C -0.053 4.053 12 Cl -0.034 7.034 13 C -0.079 4.079 14 C -0.188 4.188 15 C 0.122 3.878 16 C -0.481 4.481 17 H 0.099 0.901 18 C -0.144 4.144 19 N -0.409 5.409 20 Si 0.732 3.268 21 H -0.189 1.189 22 H -0.203 1.203 23 H -0.188 1.188 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.079 0.921 27 H 0.103 0.897 28 H 0.243 0.757 29 H 0.144 0.856 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.103 0.897 33 H 0.134 0.866 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.693 10.083 1.126 10.497 hybrid contribution -0.594 -0.612 -0.109 0.860 sum 2.099 9.471 1.017 9.754 Atomic orbital electron populations 1.20391 0.93602 1.00449 0.99600 1.19355 0.94289 0.92992 1.13683 1.20023 0.92152 0.95844 0.99051 1.17674 0.92192 0.89480 1.20732 1.19324 0.94975 0.94644 0.91671 1.18526 0.96997 0.89192 0.88643 1.84797 1.56796 1.57801 1.29835 1.21387 1.01529 0.93654 0.99795 1.20797 0.99819 0.99707 0.93286 1.20919 0.98174 0.95736 0.99475 1.21089 0.98089 0.95958 0.90192 1.98355 1.68959 1.93377 1.42676 1.20303 0.96959 0.91995 0.98669 1.20909 0.94439 0.96412 1.07043 1.17530 0.91807 0.91587 0.86841 1.19578 1.02089 0.92785 1.33608 0.90098 1.25970 0.94201 1.01463 0.92743 1.69820 1.17905 1.32107 1.21038 0.86373 0.79883 0.80626 0.79935 1.18919 1.20280 1.18753 0.94122 0.94490 0.92109 0.89729 0.75659 0.85571 0.85528 0.85498 0.89695 0.86589 0.90657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.72 9.39 36.01 0.34 -1.38 16 2 C -0.20 -4.79 5.90 -104.32 -0.62 -5.40 16 3 C -0.05 -1.16 8.38 -39.65 -0.33 -1.50 16 4 C -0.20 -4.38 4.33 -104.64 -0.45 -4.83 16 5 C 0.00 -0.09 5.32 -104.71 -0.56 -0.65 16 6 C 0.11 1.90 6.68 -38.76 -0.26 1.64 16 7 O -0.48 -8.24 12.71 -19.06 -0.24 -8.48 16 8 C -0.14 -2.01 9.97 -39.47 -0.39 -2.41 16 9 C -0.12 -1.48 10.03 -39.51 -0.40 -1.88 16 10 C -0.12 -1.74 9.81 -39.58 -0.39 -2.12 16 11 C -0.03 -0.45 6.33 -39.10 -0.25 -0.70 16 12 Cl -0.06 -1.08 27.29 -51.86 -1.42 -2.50 16 13 C -0.06 -1.45 9.38 -39.64 -0.37 -1.82 16 14 C -0.17 -4.36 8.60 -39.28 -0.34 -4.70 16 15 C 0.13 3.24 5.56 -106.80 -0.59 2.65 16 16 C -0.45 -11.56 8.09 -37.89 -0.31 -11.87 16 17 H 0.08 1.98 6.88 -52.49 -0.36 1.62 16 18 C 0.08 1.84 5.15 -17.33 -0.09 1.75 16 19 N -0.78 -19.87 10.97 55.55 0.61 -19.26 16 20 Si 0.91 18.25 29.59 -169.99 -5.03 13.22 16 21 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 22 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 23 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 24 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.04 0.67 8.08 -51.93 -0.42 0.25 16 26 H 0.06 1.27 6.77 -51.93 -0.35 0.92 16 27 H 0.08 1.75 8.06 -52.48 -0.42 1.32 16 28 H 0.39 5.08 9.06 45.56 0.41 5.49 16 29 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 30 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 31 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.08 1.98 8.06 -52.49 -0.42 1.55 16 33 H 0.12 3.11 6.23 -52.49 -0.33 2.79 16 34 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 LS Contribution 308.56 15.07 4.65 4.65 Total: -1.00 -27.86 308.56 -9.15 -37.01 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -2.72 Total: 8.57 kcal Atomic # 6 Polarization: -28.21 SS G_CDS: -5.00 Total: -33.22 kcal Atomic # 7 Polarization: -19.87 SS G_CDS: 0.61 Total: -19.26 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: -0.24 Total: -8.48 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -1.42 Total: -2.50 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.86 -9.15 -37.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244049222.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.765 kcal (2) G-P(sol) polarization free energy of solvation -27.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds