Wall clock time and date at job start Tue Mar 31 2020 05:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36222 * 120.05945 * 2 1 4 4 C 1.39998 * 120.11861 * 180.02562 * 3 2 1 5 5 C 1.47823 * 119.88856 * 180.02562 * 4 3 2 6 6 C 1.40159 * 120.18828 * 244.97954 * 5 4 3 7 7 O 1.35781 * 120.13453 * 359.95909 * 6 5 4 8 8 C 1.38522 * 119.73278 * 179.97438 * 6 5 4 9 9 C 1.38247 * 120.11519 * 0.02562 * 8 6 5 10 10 C 1.38419 * 120.38649 * 359.97438 * 9 8 6 11 11 C 1.38057 * 120.26309 * 359.78888 * 10 9 8 12 12 Cl 1.73600 * 120.06394 * 180.23092 * 11 10 9 13 13 C 1.40038 * 120.22290 * 0.02562 * 4 3 2 14 14 C 1.36196 * 120.11444 * 359.97438 * 13 4 3 15 15 C 1.40941 * 120.05593 * 180.02562 * 2 1 3 16 16 C 1.40982 * 120.10989 * 0.25510 * 15 2 1 17 17 H 1.07992 * 120.00326 * 333.34064 * 16 15 2 18 18 C 1.39982 * 119.99610 * 153.33850 * 16 15 2 19 19 N 1.30821 * 120.00475 * 343.84618 * 18 16 15 20 20 Si 1.86800 * 119.99776 * 163.84376 * 18 16 15 21 21 H 1.48495 * 109.47464 * 59.99978 * 20 18 16 22 22 H 1.48501 * 109.47101 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47133 * 300.00274 * 20 18 16 24 24 H 1.08999 * 109.47171 * 269.98133 * 1 2 3 25 25 H 1.08998 * 109.46938 * 29.97497 * 1 2 3 26 26 H 1.09001 * 109.47001 * 149.97890 * 1 2 3 27 27 H 1.08008 * 119.94077 * 0.04336 * 3 2 1 28 28 H 0.96696 * 113.99978 * 89.99731 * 7 6 5 29 29 H 1.08005 * 119.93731 * 180.02562 * 8 6 5 30 30 H 1.07995 * 119.80519 * 180.02562 * 9 8 6 31 31 H 1.08002 * 119.87341 * 180.02562 * 10 9 8 32 32 H 1.07993 * 119.94689 * 179.97438 * 13 4 3 33 33 H 1.07997 * 120.06095 * 180.02562 * 14 13 4 34 34 H 0.96996 * 120.00200 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1893 1.1790 0.0000 4 6 3.5893 1.1805 -0.0005 5 6 4.3246 2.4628 0.0000 6 6 5.1193 2.8201 -1.0978 7 8 5.2179 1.9890 -2.1671 8 6 5.8038 4.0243 -1.0876 9 6 5.7038 4.8698 0.0017 10 6 4.9204 4.5218 1.0885 11 6 4.2275 3.3277 1.0928 12 17 3.2417 2.8992 2.4561 13 6 4.2955 -0.0289 -0.0016 14 6 3.6227 -1.2130 -0.0016 15 6 2.2129 -1.2199 -0.0005 16 6 1.5115 -2.4429 -0.0065 17 1 0.5163 -2.4966 0.4091 18 6 2.1053 -3.5875 -0.5513 19 7 3.1527 -3.4750 -1.3270 20 14 1.4021 -5.2757 -0.1706 21 1 -0.0050 -5.3433 -0.6404 22 1 2.2061 -6.3145 -0.8631 23 1 1.4464 -5.5113 1.2950 24 1 -0.3633 -0.0003 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6493 2.1144 0.0007 28 1 4.5518 2.1462 -2.8501 29 1 6.4168 4.3031 -1.9320 30 1 6.2393 5.8076 0.0042 31 1 4.8478 5.1888 1.9349 32 1 5.3754 -0.0225 -0.0025 33 1 4.1681 -2.1451 -0.0021 34 1 3.5643 -4.2682 -1.7042 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244049222.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:34 Heat of formation + Delta-G solvation = -32.817855 kcal Electronic energy + Delta-G solvation = -19785.129454 eV Core-core repulsion = 16672.330770 eV Total energy + Delta-G solvation = -3112.798685 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.85698 -39.31883 -37.89770 -36.86985 -35.66869 -33.75955 -32.30644 -30.82811 -30.17853 -27.90679 -26.52630 -23.86718 -23.42863 -22.27896 -21.11016 -19.27918 -19.07944 -17.43996 -17.11520 -16.84472 -16.42145 -15.78578 -15.62043 -15.17970 -15.10441 -14.38981 -14.25737 -13.96427 -13.66147 -13.57331 -13.18327 -12.92260 -12.90390 -12.80854 -12.66964 -12.37459 -12.19234 -11.98690 -11.78244 -11.56963 -11.30277 -11.15187 -11.02787 -9.69240 -9.55286 -9.21220 -8.98779 -8.61779 -6.28481 0.17258 0.21047 0.98656 1.22791 1.30246 1.38098 1.48920 1.53676 2.20044 2.57945 2.76237 3.37526 3.71232 3.93664 4.09008 4.28785 4.43610 4.46275 4.48615 4.73352 4.73857 4.86612 4.99137 5.03789 5.15732 5.25989 5.28713 5.36510 5.42168 5.44944 5.53801 5.77336 5.80341 6.04961 6.17937 6.23352 6.40495 6.71148 6.87347 6.95707 7.07790 8.32984 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.023477 B = 0.004960 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.362066 B = 5644.128842 C = 6277.445779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.213 4.213 3 C -0.058 4.058 4 C -0.175 4.175 5 C -0.049 4.049 6 C 0.100 3.900 7 O -0.502 6.502 8 C -0.139 4.139 9 C -0.094 4.094 10 C -0.121 4.121 11 C -0.037 4.037 12 Cl -0.074 7.074 13 C -0.075 4.075 14 C -0.190 4.190 15 C 0.092 3.908 16 C -0.485 4.485 17 H 0.082 0.918 18 C 0.035 3.965 19 N -0.822 5.822 20 Si 0.978 3.022 21 H -0.256 1.256 22 H -0.270 1.270 23 H -0.262 1.262 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.103 0.897 28 H 0.401 0.599 29 H 0.155 0.845 30 H 0.173 0.827 31 H 0.156 0.844 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.514 13.126 0.952 13.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.214 4.214 3 C -0.077 4.077 4 C -0.176 4.176 5 C -0.050 4.050 6 C 0.055 3.945 7 O -0.314 6.314 8 C -0.157 4.157 9 C -0.112 4.112 10 C -0.139 4.139 11 C -0.063 4.063 12 Cl -0.045 7.045 13 C -0.093 4.093 14 C -0.210 4.210 15 C 0.090 3.910 16 C -0.513 4.513 17 H 0.100 0.900 18 C -0.181 4.181 19 N -0.448 5.448 20 Si 0.799 3.201 21 H -0.180 1.180 22 H -0.194 1.194 23 H -0.187 1.187 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.121 0.879 28 H 0.259 0.741 29 H 0.173 0.827 30 H 0.191 0.809 31 H 0.173 0.827 32 H 0.100 0.900 33 H 0.112 0.888 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.047 12.708 1.215 13.124 hybrid contribution -0.566 -1.121 -0.153 1.265 sum 2.482 11.587 1.061 11.897 Atomic orbital electron populations 1.20369 0.91556 1.01108 1.00474 1.19793 0.96095 0.92775 1.12750 1.20238 0.92506 0.96034 0.98880 1.17904 0.92369 0.90383 1.16943 1.19298 0.97454 0.94281 0.94006 1.18769 0.97229 0.90386 0.88088 1.84756 1.57543 1.58671 1.30402 1.21710 1.00614 0.92182 1.01234 1.21358 0.97852 1.00582 0.91424 1.21305 0.97082 0.94642 1.00903 1.21242 0.98794 0.96823 0.89470 1.98351 1.69419 1.93623 1.43148 1.20384 0.96911 0.92534 0.99503 1.20844 0.94913 0.96288 1.08925 1.17843 0.92012 0.92922 0.88259 1.19776 1.02593 0.93738 1.35242 0.89956 1.26788 0.94368 1.04945 0.91966 1.69892 1.19397 1.33266 1.22206 0.85304 0.79406 0.75818 0.79541 1.18026 1.19447 1.18669 0.93021 0.92203 0.92980 0.87940 0.74127 0.82694 0.80921 0.82656 0.89975 0.88750 0.90233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.21 9.39 71.24 0.67 -2.54 16 2 C -0.21 -10.29 5.90 -19.67 -0.12 -10.41 16 3 C -0.06 -2.61 8.38 22.23 0.19 -2.42 16 4 C -0.17 -7.77 4.33 -19.88 -0.09 -7.86 16 5 C -0.05 -1.82 5.32 -19.92 -0.11 -1.93 16 6 C 0.10 3.24 6.68 22.80 0.15 3.40 16 7 O -0.50 -16.86 12.71 -91.10 -1.16 -18.01 16 8 C -0.14 -3.30 9.97 22.34 0.22 -3.07 16 9 C -0.09 -1.86 10.03 22.32 0.22 -1.64 16 10 C -0.12 -2.88 9.81 22.27 0.22 -2.66 16 11 C -0.04 -1.18 6.33 22.58 0.14 -1.04 16 12 Cl -0.07 -2.48 27.29 -2.72 -0.07 -2.56 16 13 C -0.07 -3.74 9.38 22.23 0.21 -3.53 16 14 C -0.19 -10.43 8.60 22.47 0.19 -10.24 16 15 C 0.09 4.99 5.56 -21.27 -0.12 4.87 16 16 C -0.48 -25.85 8.09 23.37 0.19 -25.66 16 17 H 0.08 4.19 6.88 -2.91 -0.02 4.17 16 18 C 0.03 1.75 5.15 85.27 0.44 2.19 16 19 N -0.82 -43.68 10.97 21.83 0.24 -43.44 16 20 Si 0.98 38.37 29.59 68.60 2.03 40.40 16 21 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 22 H -0.27 -10.10 7.11 99.48 0.71 -9.40 16 23 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 24 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.06 2.12 8.08 -2.39 -0.02 2.10 16 26 H 0.05 2.20 6.77 -2.39 -0.02 2.18 16 27 H 0.10 4.15 8.06 -2.91 -0.02 4.12 16 28 H 0.40 10.37 9.06 -74.06 -0.67 9.70 16 29 H 0.16 2.80 8.06 -2.91 -0.02 2.77 16 30 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 31 H 0.16 2.83 8.06 -2.91 -0.02 2.80 16 32 H 0.08 4.02 8.06 -2.91 -0.02 4.00 16 33 H 0.09 5.46 6.23 -2.91 -0.02 5.44 16 34 H 0.29 13.90 8.30 -92.71 -0.77 13.13 16 Total: -1.00 -63.53 308.56 3.93 -59.60 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: 0.47 Total: 26.56 kcal Atomic # 6 Polarization: -64.96 SS G_CDS: 2.42 Total: -62.54 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: 0.24 Total: -43.44 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -1.16 Total: -18.01 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 2.03 Total: 40.40 kcal Atomic # 17 Polarization: -2.48 SS G_CDS: -0.07 Total: -2.56 kcal Total: -63.53 3.93 -59.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244049222.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.784 kcal (2) G-P(sol) polarization free energy of solvation -63.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds