Wall clock time and date at job start Tue Mar 31 2020 05:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38898 * 119.23906 * 2 1 4 4 C 1.36867 * 119.82719 * 179.97438 * 3 2 1 5 5 C 1.41111 * 118.40596 * 0.02562 * 4 3 2 6 6 C 1.40819 * 120.72307 * 180.02562 * 5 4 3 7 7 H 1.08000 * 119.99879 * 154.23656 * 6 5 4 8 8 C 1.40031 * 120.00116 * 334.22860 * 6 5 4 9 9 N 1.30804 * 120.00086 * 343.63573 * 8 6 5 10 10 Si 1.86804 * 120.00158 * 163.63147 * 8 6 5 11 11 H 1.48494 * 109.47317 * 90.00361 * 10 8 6 12 12 H 1.48504 * 109.46911 * 210.00494 * 10 8 6 13 13 H 1.48505 * 109.46970 * 329.99958 * 10 8 6 14 14 C 1.41986 * 118.55500 * 359.97438 * 5 4 3 15 15 C 1.47525 * 120.00861 * 179.97438 * 14 5 4 16 16 C 1.39747 * 120.19497 * 308.62985 * 15 14 5 17 17 C 1.37754 * 119.93431 * 179.97438 * 16 15 14 18 18 C 1.38738 * 120.33014 * 359.97438 * 17 16 15 19 19 Cl 1.73603 * 119.80798 * 179.97438 * 18 17 16 20 20 C 1.38213 * 120.38895 * 0.02562 * 18 17 16 21 21 C 1.38782 * 120.05650 * 359.74032 * 20 18 17 22 22 N 1.39105 * 120.16421 * 180.27961 * 21 20 18 23 23 N 1.31713 * 119.24268 * 179.72975 * 2 1 3 24 24 H 1.08995 * 109.47063 * 89.99592 * 1 2 3 25 25 H 1.08994 * 109.47166 * 209.99799 * 1 2 3 26 26 H 1.09002 * 109.47298 * 330.00297 * 1 2 3 27 27 H 1.08004 * 120.08649 * 359.95387 * 3 2 1 28 28 H 1.08004 * 120.79771 * 180.02562 * 4 3 2 29 29 H 0.96998 * 120.00376 * 179.97438 * 9 8 6 30 30 H 1.07998 * 120.02869 * 359.97438 * 16 15 14 31 31 H 1.08001 * 119.83340 * 180.02562 * 17 16 15 32 32 H 1.07997 * 119.97310 * 179.97438 * 20 18 17 33 33 H 0.97001 * 120.00703 * 173.47678 * 22 21 20 34 34 H 0.97010 * 120.00133 * 353.47511 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1854 1.2120 0.0000 4 6 3.5540 1.2261 0.0005 5 6 4.2380 -0.0082 0.0005 6 6 5.6456 -0.0507 0.0016 7 1 6.1596 -0.9091 0.4081 8 6 6.3788 1.0200 -0.5246 9 7 5.7914 1.8992 -1.2946 10 14 8.1958 1.1928 -0.1268 11 1 8.9967 0.4676 -1.1454 12 1 8.5696 2.6300 -0.1345 13 1 8.4654 0.6184 1.2158 14 6 3.4762 -1.2063 0.0005 15 6 4.1583 -2.5144 -0.0001 16 6 5.1515 -2.7887 -0.9441 17 6 5.7854 -4.0118 -0.9394 18 6 5.4433 -4.9746 -0.0009 19 17 6.2503 -6.5116 -0.0078 20 6 4.4629 -4.7177 0.9389 21 6 3.8174 -3.4892 0.9519 22 7 2.8345 -3.2261 1.9004 23 7 2.1504 -1.1493 0.0054 24 1 -0.3633 0.0001 -1.0276 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6345 2.1409 -0.0008 28 1 4.0975 2.1594 0.0010 29 1 6.2992 2.6411 -1.6589 30 1 5.4218 -2.0426 -1.6766 31 1 6.5530 -4.2219 -1.6695 32 1 4.2016 -5.4721 1.6661 33 1 2.4518 -2.3374 1.9689 34 1 2.5315 -3.9315 2.4935 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244198010.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:54 Heat of formation + Delta-G solvation = 16.204597 kcal Electronic energy + Delta-G solvation = -19967.417364 eV Core-core repulsion = 16889.037204 eV Total energy + Delta-G solvation = -3078.380160 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.88107 -39.51663 -37.40854 -36.17306 -35.15847 -33.69549 -32.59780 -30.87925 -29.58108 -29.24031 -26.10062 -24.28630 -23.35123 -22.33798 -21.70109 -19.22753 -18.21952 -17.80946 -17.35073 -17.02045 -16.24218 -15.75567 -15.45091 -15.08634 -14.81430 -14.62873 -14.42944 -14.27236 -13.78416 -13.46857 -13.26267 -13.09570 -12.87836 -12.66885 -12.63083 -12.59046 -12.33479 -12.14104 -11.77592 -11.58799 -11.21402 -11.13556 -10.24810 -9.87568 -9.61757 -9.22748 -8.72339 -8.23534 -6.34211 0.19606 0.73073 0.86603 1.13241 1.23848 1.38241 1.47051 1.53055 2.17032 2.69683 2.92140 3.17588 3.64488 3.87265 4.06985 4.35502 4.39238 4.48677 4.64345 4.65708 4.83169 4.97063 4.99887 5.02283 5.05538 5.15956 5.24667 5.34807 5.40336 5.50390 5.71358 5.83340 5.87923 6.07615 6.10684 6.53998 6.65182 6.76949 6.83937 7.09733 7.75875 8.22470 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.011836 B = 0.007254 C = 0.004788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.108952 B = 3858.887498 C = 5846.581857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.020 4.020 3 C -0.148 4.148 4 C -0.153 4.153 5 C 0.054 3.946 6 C -0.456 4.456 7 H 0.081 0.919 8 C 0.041 3.959 9 N -0.814 5.814 10 Si 0.971 3.029 11 H -0.260 1.260 12 H -0.266 1.266 13 H -0.261 1.261 14 C 0.015 3.985 15 C -0.080 4.080 16 C -0.047 4.047 17 C -0.178 4.178 18 C 0.005 3.995 19 Cl -0.070 7.070 20 C -0.199 4.199 21 C 0.234 3.766 22 N -0.855 5.855 23 N -0.459 5.459 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.122 0.878 28 H 0.112 0.888 29 H 0.292 0.708 30 H 0.115 0.885 31 H 0.139 0.861 32 H 0.148 0.852 33 H 0.399 0.601 34 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.948 -6.821 3.485 7.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.161 4.161 3 C -0.168 4.168 4 C -0.179 4.179 5 C 0.049 3.951 6 C -0.484 4.484 7 H 0.099 0.901 8 C -0.176 4.176 9 N -0.439 5.439 10 Si 0.792 3.208 11 H -0.184 1.184 12 H -0.190 1.190 13 H -0.184 1.184 14 C -0.123 4.123 15 C -0.086 4.086 16 C -0.067 4.067 17 C -0.199 4.199 18 C -0.023 4.023 19 Cl -0.041 7.041 20 C -0.222 4.222 21 C 0.126 3.874 22 N -0.393 5.393 23 N -0.168 5.168 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.095 0.905 27 H 0.140 0.860 28 H 0.130 0.870 29 H 0.103 0.897 30 H 0.133 0.867 31 H 0.157 0.843 32 H 0.166 0.834 33 H 0.229 0.771 34 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -1.320 -7.501 3.339 8.316 hybrid contribution 1.086 1.353 0.058 1.736 sum -0.234 -6.147 3.398 7.028 Atomic orbital electron populations 1.20325 0.88276 1.02372 1.01600 1.21012 0.97042 0.88102 1.09960 1.21530 0.94810 0.98620 1.01832 1.21415 0.93739 0.98314 1.04421 1.18667 0.94842 0.91593 0.89958 1.19623 0.91219 1.03488 1.34106 0.90068 1.26703 1.05266 0.93659 0.91928 1.69812 1.40634 1.11547 1.21889 0.85344 0.76616 0.78738 0.80116 1.18410 1.18989 1.18447 1.19610 0.88557 0.91691 1.12424 1.18115 1.00093 0.92623 0.97771 1.20940 0.93678 0.95482 0.96638 1.20726 1.04316 0.93007 1.01828 1.20594 0.96360 0.87355 0.97961 1.98321 1.78746 1.28861 1.98191 1.20357 1.01010 0.97247 1.03614 1.17719 0.88982 0.92210 0.88538 1.42256 1.42925 1.15746 1.38395 1.67045 1.09247 1.29589 1.10937 0.92284 0.91891 0.90498 0.85958 0.86965 0.89724 0.86711 0.84281 0.83394 0.77112 0.76440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.19 10.15 71.24 0.72 -1.46 16 2 C -0.02 -0.85 6.79 42.73 0.29 -0.56 16 3 C -0.15 -6.51 9.64 22.11 0.21 -6.30 16 4 C -0.15 -7.63 8.74 22.65 0.20 -7.44 16 5 C 0.05 2.77 5.57 -21.01 -0.12 2.65 16 6 C -0.46 -22.89 7.23 23.34 0.17 -22.72 16 7 H 0.08 4.06 6.66 -2.91 -0.02 4.04 16 8 C 0.04 1.95 5.18 85.28 0.44 2.39 16 9 N -0.81 -39.81 10.99 21.84 0.24 -39.57 16 10 Si 0.97 36.38 29.59 68.60 2.03 38.41 16 11 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 12 H -0.27 -9.46 7.11 99.48 0.71 -8.75 16 13 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 14 C 0.02 0.74 5.67 42.39 0.24 0.98 16 15 C -0.08 -3.48 5.03 -19.92 -0.10 -3.58 16 16 C -0.05 -1.95 8.02 22.52 0.18 -1.77 16 17 C -0.18 -6.19 9.80 22.27 0.22 -5.98 16 18 C 0.00 0.15 6.32 22.38 0.14 0.29 16 19 Cl -0.07 -1.86 28.94 -2.72 -0.08 -1.94 16 20 C -0.20 -6.33 9.66 22.39 0.22 -6.12 16 21 C 0.23 8.65 6.75 38.66 0.26 8.91 16 22 N -0.85 -27.57 8.86 -50.84 -0.45 -28.03 16 23 N -0.46 -20.94 8.79 -171.24 -1.51 -22.45 16 24 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.08 2.07 8.07 -2.39 -0.02 2.05 16 27 H 0.12 4.62 8.06 -2.91 -0.02 4.59 16 28 H 0.11 5.77 6.31 -2.91 -0.02 5.75 16 29 H 0.29 12.91 8.30 -92.71 -0.77 12.14 16 30 H 0.11 5.10 7.42 -2.91 -0.02 5.08 16 31 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 32 H 0.15 3.84 8.06 -2.91 -0.02 3.81 16 33 H 0.40 14.33 6.81 -92.71 -0.63 13.70 16 34 H 0.41 9.92 8.84 -92.70 -0.82 9.10 16 Total: -1.00 -55.70 305.91 3.02 -52.67 By element: Atomic # 1 Polarization: 41.89 SS G_CDS: -0.29 Total: 41.61 kcal Atomic # 6 Polarization: -43.78 SS G_CDS: 3.08 Total: -40.71 kcal Atomic # 7 Polarization: -88.32 SS G_CDS: -1.72 Total: -90.04 kcal Atomic # 14 Polarization: 36.38 SS G_CDS: 2.03 Total: 38.41 kcal Atomic # 17 Polarization: -1.86 SS G_CDS: -0.08 Total: -1.94 kcal Total: -55.70 3.02 -52.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244198010.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.878 kcal (2) G-P(sol) polarization free energy of solvation -55.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds