Wall clock time and date at job start Tue Mar 31 2020 05:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37808 * 119.94682 * 2 1 4 4 C 1.39715 * 119.93009 * 179.69941 * 3 2 1 5 5 C 1.47772 * 120.08672 * 180.29876 * 4 3 2 6 6 C 1.39236 * 120.34180 * 310.00272 * 5 4 3 7 7 C 1.38031 * 119.97656 * 180.02562 * 6 5 4 8 8 C 1.38961 * 120.68544 * 359.97438 * 7 6 5 9 9 C 1.36405 * 120.69944 * 0.02562 * 8 7 6 10 10 C 1.40767 * 119.99046 * 359.71467 * 9 8 7 11 11 C 1.40842 * 120.33898 * 180.27983 * 10 9 8 12 12 H 1.07999 * 120.00163 * 153.75969 * 11 10 9 13 13 C 1.40040 * 119.99767 * 333.75958 * 11 10 9 14 14 N 1.30798 * 120.00370 * 342.89508 * 13 11 10 15 15 Si 1.86807 * 120.00159 * 162.88812 * 13 11 10 16 16 H 1.48505 * 109.46647 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47187 * 119.99989 * 15 13 11 18 18 H 1.48501 * 109.47422 * 240.00568 * 15 13 11 19 19 C 1.39758 * 119.82398 * 0.27767 * 4 3 2 20 20 C 1.37829 * 119.89455 * 0.02562 * 19 4 3 21 21 Cl 1.73599 * 119.96546 * 179.97438 * 20 19 4 22 22 C 1.38898 * 119.95223 * 180.25205 * 2 1 3 23 23 O 1.35831 * 119.91244 * 0.02703 * 22 2 1 24 24 H 1.09001 * 109.47532 * 90.00431 * 1 2 3 25 25 H 1.09011 * 109.46958 * 210.00290 * 1 2 3 26 26 H 1.09007 * 109.47230 * 329.99747 * 1 2 3 27 27 H 1.08006 * 120.03681 * 359.97438 * 3 2 1 28 28 H 1.08000 * 120.01221 * 359.97438 * 6 5 4 29 29 H 1.07999 * 119.65431 * 179.97438 * 7 6 5 30 30 H 1.07995 * 119.65205 * 179.97438 * 8 7 6 31 31 H 1.07996 * 120.00963 * 180.02562 * 9 8 7 32 32 H 0.96995 * 120.00351 * 180.02562 * 14 13 11 33 33 H 1.08001 * 120.05304 * 179.97438 * 19 4 3 34 34 H 0.96699 * 114.00231 * 270.27138 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1949 1.1941 0.0000 4 6 3.5920 1.1937 0.0064 5 6 4.3331 2.4721 0.0130 6 6 4.0218 3.4704 -0.9063 7 6 4.7193 4.6615 -0.8936 8 6 5.7341 4.8792 0.0304 9 6 6.0620 3.9204 0.9435 10 6 5.3658 2.6970 0.9601 11 6 5.6944 1.7042 1.9034 12 1 4.9502 0.9849 2.2119 13 6 6.9863 1.6497 2.4414 14 7 7.9686 2.2779 1.8488 15 14 7.3066 0.6799 4.0055 16 1 6.0385 0.0667 4.4761 17 1 8.3013 -0.3879 3.7309 18 1 7.8341 1.5904 5.0533 19 6 4.2867 -0.0190 0.0068 20 6 3.5914 -1.2090 0.0005 21 17 4.4525 -2.7164 0.0003 22 6 2.2004 -1.2035 -0.0053 23 8 1.5185 -2.3782 -0.0110 24 1 -0.3634 -0.0001 -1.0276 25 1 -0.3633 -0.8901 0.5139 26 1 -0.3634 0.8900 0.5139 27 1 1.6546 2.1293 -0.0004 28 1 3.2355 3.3126 -1.6295 29 1 4.4738 5.4321 -1.6093 30 1 6.2693 5.8172 0.0251 31 1 6.8523 4.1016 1.6569 32 1 8.8634 2.2398 2.2212 33 1 5.3667 -0.0236 0.0113 34 1 1.3170 -2.7203 0.8707 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244537498.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:25 Heat of formation + Delta-G solvation = -22.427173 kcal Electronic energy + Delta-G solvation = -19875.829156 eV Core-core repulsion = 16763.481045 eV Total energy + Delta-G solvation = -3112.348111 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.57025 -37.79316 -36.16784 -35.94089 -33.83402 -32.41795 -30.81129 -29.74040 -27.83751 -26.42219 -25.35980 -22.52934 -21.54213 -20.79096 -19.59110 -18.04443 -17.39879 -15.93824 -15.63093 -15.37859 -15.04466 -14.45759 -13.82640 -13.52297 -13.32879 -12.89295 -12.86553 -12.69754 -12.26572 -12.17115 -11.88268 -11.73604 -11.37949 -11.29289 -11.19218 -10.85816 -10.66753 -10.63408 -10.49522 -10.12237 -9.71219 -9.53253 -9.31815 -8.22688 -8.18660 -7.52885 -7.27304 -6.89858 -4.48859 1.49437 1.71921 2.56037 2.67505 2.89065 3.01044 3.06332 3.14104 3.83013 4.05906 4.48722 4.51470 5.10731 5.30898 5.52610 5.68565 5.76878 5.79089 5.90772 5.97962 6.10757 6.18524 6.32366 6.42952 6.48809 6.73630 6.78944 6.90089 7.05029 7.11574 7.21544 7.30917 7.44742 7.76618 7.85988 7.91870 7.98143 8.12625 8.47102 8.71215 8.80664 10.00664 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.012880 B = 0.007284 C = 0.005234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.453370 B = 3843.144989 C = 5348.365194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.103 4.103 3 C -0.116 4.116 4 C 0.035 3.965 5 C -0.196 4.196 6 C -0.067 4.067 7 C -0.243 4.243 8 C -0.099 4.099 9 C -0.158 4.158 10 C 0.132 3.868 11 C -0.449 4.449 12 H 0.083 0.917 13 C 0.078 3.922 14 N -0.783 5.783 15 Si 0.902 3.098 16 H -0.258 1.258 17 H -0.272 1.272 18 H -0.270 1.270 19 C -0.083 4.083 20 C -0.055 4.055 21 Cl -0.078 7.078 22 C 0.077 3.923 23 O -0.488 6.488 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.125 0.875 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.118 0.882 32 H 0.283 0.717 33 H 0.144 0.856 34 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.630 -4.376 -0.022 8.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.104 4.104 3 C -0.135 4.135 4 C 0.034 3.966 5 C -0.197 4.197 6 C -0.085 4.085 7 C -0.263 4.263 8 C -0.117 4.117 9 C -0.177 4.177 10 C 0.130 3.870 11 C -0.478 4.478 12 H 0.101 0.899 13 C -0.141 4.141 14 N -0.407 5.407 15 Si 0.726 3.274 16 H -0.181 1.181 17 H -0.197 1.197 18 H -0.195 1.195 19 C -0.101 4.101 20 C -0.082 4.082 21 Cl -0.049 7.049 22 C 0.032 3.968 23 O -0.297 6.297 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.143 0.857 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.136 0.864 32 H 0.094 0.906 33 H 0.162 0.838 34 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -7.251 -4.426 -0.617 8.518 hybrid contribution 0.476 -0.588 1.178 1.401 sum -6.775 -5.014 0.561 8.447 Atomic orbital electron populations 1.20578 0.90814 1.02200 1.02138 1.19893 0.96183 0.91866 1.02443 1.21193 0.93661 0.96795 1.01815 1.18762 0.91624 0.92806 0.93375 1.18474 1.05729 0.93192 1.02319 1.20561 0.97786 0.93178 0.96971 1.20276 1.03135 0.98308 1.04537 1.20497 0.96952 0.97895 0.96386 1.21034 1.02663 0.93118 1.00851 1.17525 0.88406 0.91842 0.89252 1.19610 0.96244 1.12407 1.19522 0.89853 1.25945 0.95826 0.94875 0.97494 1.69804 1.01340 1.34012 1.35579 0.86334 0.79712 0.79890 0.81484 1.18103 1.19690 1.19532 1.21310 1.01382 0.89177 0.98257 1.21252 0.91243 0.87448 1.08250 1.98323 1.76975 1.32549 1.97092 1.17881 0.87561 0.85305 1.06091 1.84830 1.75894 1.36145 1.32782 0.91407 0.91812 0.91713 0.85689 0.89105 0.89312 0.89391 0.86435 0.90579 0.83847 0.76675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.24 9.78 36.00 0.35 -0.89 16 2 C -0.10 -1.65 5.89 -104.54 -0.62 -2.27 16 3 C -0.12 -2.07 9.16 -39.19 -0.36 -2.43 16 4 C 0.03 0.72 4.92 -104.88 -0.52 0.20 16 5 C -0.20 -4.47 5.52 -104.22 -0.58 -5.04 16 6 C -0.07 -1.43 9.51 -39.29 -0.37 -1.81 16 7 C -0.24 -5.20 10.03 -39.39 -0.40 -5.59 16 8 C -0.10 -2.21 9.96 -39.97 -0.40 -2.61 16 9 C -0.16 -3.87 8.62 -39.29 -0.34 -4.21 16 10 C 0.13 3.29 5.55 -106.55 -0.59 2.70 16 11 C -0.45 -11.05 7.13 -37.92 -0.27 -11.32 16 12 H 0.08 2.04 6.64 -52.49 -0.35 1.69 16 13 C 0.08 1.85 5.14 -17.32 -0.09 1.76 16 14 N -0.78 -19.08 11.03 55.55 0.61 -18.46 16 15 Si 0.90 18.02 29.59 -169.99 -5.03 12.99 16 16 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 17 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 18 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 19 C -0.08 -1.69 7.77 -39.16 -0.30 -1.99 16 20 C -0.05 -1.01 6.33 -39.41 -0.25 -1.26 16 21 Cl -0.08 -1.32 28.49 -51.86 -1.48 -2.80 16 22 C 0.08 1.28 6.68 -39.02 -0.26 1.02 16 23 O -0.49 -6.97 11.98 -19.21 -0.23 -7.20 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.70 7.53 -51.92 -0.39 0.31 16 26 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 27 H 0.13 2.05 8.04 -52.48 -0.42 1.63 16 28 H 0.09 1.74 8.04 -52.49 -0.42 1.31 16 29 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 30 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.12 2.96 6.26 -52.49 -0.33 2.64 16 32 H 0.28 6.28 8.29 -40.82 -0.34 5.94 16 33 H 0.14 3.17 7.33 -52.49 -0.38 2.78 16 34 H 0.38 3.83 9.06 45.56 0.41 4.24 16 LS Contribution 307.95 15.07 4.64 4.64 Total: -1.00 -26.24 307.95 -9.18 -35.42 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -2.71 Total: 9.14 kcal Atomic # 6 Polarization: -28.74 SS G_CDS: -4.99 Total: -33.73 kcal Atomic # 7 Polarization: -19.08 SS G_CDS: 0.61 Total: -18.46 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -0.23 Total: -7.20 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -1.48 Total: -2.80 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -26.24 -9.18 -35.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244537498.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.989 kcal (2) G-P(sol) polarization free energy of solvation -26.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds