Wall clock time and date at job start Tue Mar 31 2020 05:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37808 * 119.94682 * 2 1 4 4 C 1.39715 * 119.93009 * 179.69941 * 3 2 1 5 5 C 1.47772 * 120.08672 * 180.29876 * 4 3 2 6 6 C 1.39236 * 120.34180 * 310.00272 * 5 4 3 7 7 C 1.38031 * 119.97656 * 180.02562 * 6 5 4 8 8 C 1.38961 * 120.68544 * 359.97438 * 7 6 5 9 9 C 1.36405 * 120.69944 * 0.02562 * 8 7 6 10 10 C 1.40767 * 119.99046 * 359.71467 * 9 8 7 11 11 C 1.40842 * 120.33898 * 180.27983 * 10 9 8 12 12 H 1.07999 * 120.00163 * 153.75969 * 11 10 9 13 13 C 1.40040 * 119.99767 * 333.75958 * 11 10 9 14 14 N 1.30798 * 120.00370 * 342.89508 * 13 11 10 15 15 Si 1.86807 * 120.00159 * 162.88812 * 13 11 10 16 16 H 1.48505 * 109.46647 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47187 * 119.99989 * 15 13 11 18 18 H 1.48501 * 109.47422 * 240.00568 * 15 13 11 19 19 C 1.39758 * 119.82398 * 0.27767 * 4 3 2 20 20 C 1.37829 * 119.89455 * 0.02562 * 19 4 3 21 21 Cl 1.73599 * 119.96546 * 179.97438 * 20 19 4 22 22 C 1.38898 * 119.95223 * 180.25205 * 2 1 3 23 23 O 1.35831 * 119.91244 * 0.02703 * 22 2 1 24 24 H 1.09001 * 109.47532 * 90.00431 * 1 2 3 25 25 H 1.09011 * 109.46958 * 210.00290 * 1 2 3 26 26 H 1.09007 * 109.47230 * 329.99747 * 1 2 3 27 27 H 1.08006 * 120.03681 * 359.97438 * 3 2 1 28 28 H 1.08000 * 120.01221 * 359.97438 * 6 5 4 29 29 H 1.07999 * 119.65431 * 179.97438 * 7 6 5 30 30 H 1.07995 * 119.65205 * 179.97438 * 8 7 6 31 31 H 1.07996 * 120.00963 * 180.02562 * 9 8 7 32 32 H 0.96995 * 120.00351 * 180.02562 * 14 13 11 33 33 H 1.08001 * 120.05304 * 179.97438 * 19 4 3 34 34 H 0.96699 * 114.00231 * 270.27138 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1949 1.1941 0.0000 4 6 3.5920 1.1937 0.0064 5 6 4.3331 2.4721 0.0130 6 6 4.0218 3.4704 -0.9063 7 6 4.7193 4.6615 -0.8936 8 6 5.7341 4.8792 0.0304 9 6 6.0620 3.9204 0.9435 10 6 5.3658 2.6970 0.9601 11 6 5.6944 1.7042 1.9034 12 1 4.9502 0.9849 2.2119 13 6 6.9863 1.6497 2.4414 14 7 7.9686 2.2779 1.8488 15 14 7.3066 0.6799 4.0055 16 1 6.0385 0.0667 4.4761 17 1 8.3013 -0.3879 3.7309 18 1 7.8341 1.5904 5.0533 19 6 4.2867 -0.0190 0.0068 20 6 3.5914 -1.2090 0.0005 21 17 4.4525 -2.7164 0.0003 22 6 2.2004 -1.2035 -0.0053 23 8 1.5185 -2.3782 -0.0110 24 1 -0.3634 -0.0001 -1.0276 25 1 -0.3633 -0.8901 0.5139 26 1 -0.3634 0.8900 0.5139 27 1 1.6546 2.1293 -0.0004 28 1 3.2355 3.3126 -1.6295 29 1 4.4738 5.4321 -1.6093 30 1 6.2693 5.8172 0.0251 31 1 6.8523 4.1016 1.6569 32 1 8.8634 2.2398 2.2212 33 1 5.3667 -0.0236 0.0113 34 1 1.3170 -2.7203 0.8707 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244537498.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:25 Heat of formation + Delta-G solvation = -35.005042 kcal Electronic energy + Delta-G solvation = -19876.374574 eV Core-core repulsion = 16763.481045 eV Total energy + Delta-G solvation = -3112.893528 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.95517 -39.40698 -37.51280 -37.33029 -35.59425 -33.73747 -32.34902 -31.49317 -29.36138 -27.65398 -27.12003 -24.02346 -23.06522 -22.44280 -21.14389 -19.34555 -19.14334 -17.51166 -17.02809 -16.93873 -16.41955 -16.04318 -15.41357 -15.17882 -14.71212 -14.41869 -14.23405 -14.02696 -13.65635 -13.51186 -13.38797 -13.14701 -12.91241 -12.83789 -12.76946 -12.42636 -12.20772 -12.06651 -12.01082 -11.48150 -11.37613 -11.20044 -11.07951 -9.75605 -9.57456 -9.30670 -8.92466 -8.62922 -6.31323 0.06243 0.30578 0.97832 1.12378 1.21896 1.35177 1.47221 1.49541 2.16792 2.62375 2.73980 3.24634 3.71685 3.90785 4.00131 4.34913 4.43950 4.46731 4.52713 4.63649 4.81089 4.86356 4.89697 4.92184 5.12721 5.20980 5.25513 5.32969 5.43226 5.44995 5.68845 5.69512 5.82336 6.05162 6.12920 6.20376 6.36414 6.67767 6.79796 6.91572 7.02282 8.28175 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.012880 B = 0.007284 C = 0.005234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.453370 B = 3843.144989 C = 5348.365194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.097 4.097 3 C -0.112 4.112 4 C 0.007 3.993 5 C -0.198 4.198 6 C -0.075 4.075 7 C -0.241 4.241 8 C -0.105 4.105 9 C -0.185 4.185 10 C 0.102 3.898 11 C -0.470 4.470 12 H 0.075 0.925 13 C 0.042 3.958 14 N -0.817 5.817 15 Si 0.962 3.038 16 H -0.259 1.259 17 H -0.268 1.268 18 H -0.262 1.262 19 C -0.097 4.097 20 C -0.066 4.066 21 Cl -0.070 7.070 22 C 0.091 3.909 23 O -0.486 6.486 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.141 0.859 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.109 0.891 31 H 0.100 0.900 32 H 0.289 0.711 33 H 0.113 0.887 34 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.101 -5.094 -0.281 11.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.098 4.098 3 C -0.130 4.130 4 C 0.006 3.994 5 C -0.199 4.199 6 C -0.093 4.093 7 C -0.260 4.260 8 C -0.124 4.124 9 C -0.205 4.205 10 C 0.099 3.901 11 C -0.499 4.499 12 H 0.093 0.907 13 C -0.174 4.174 14 N -0.443 5.443 15 Si 0.784 3.216 16 H -0.183 1.183 17 H -0.193 1.193 18 H -0.186 1.186 19 C -0.116 4.116 20 C -0.093 4.093 21 Cl -0.041 7.041 22 C 0.045 3.955 23 O -0.298 6.298 24 H 0.098 0.902 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.158 0.842 28 H 0.136 0.864 29 H 0.137 0.863 30 H 0.127 0.873 31 H 0.118 0.882 32 H 0.099 0.901 33 H 0.131 0.869 34 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -9.734 -5.148 -0.870 11.046 hybrid contribution 1.096 -0.428 1.141 1.639 sum -8.638 -5.576 0.271 10.285 Atomic orbital electron populations 1.20681 0.87575 1.03893 1.03359 1.20279 0.98333 0.90716 1.00445 1.21342 0.92386 0.98345 1.00923 1.18766 0.92944 0.91831 0.95835 1.18828 1.04978 0.94531 1.01605 1.20910 0.98437 0.92913 0.97029 1.20663 1.02057 0.99003 1.04257 1.20774 0.97368 0.98239 0.95998 1.21021 1.03303 0.94154 1.01975 1.17867 0.89706 0.92201 0.90312 1.19627 0.96689 1.12827 1.20790 0.90736 1.26617 0.95323 0.95681 0.99808 1.69849 1.01807 1.35673 1.36947 0.85432 0.79334 0.78700 0.78143 1.18256 1.19251 1.18645 1.21045 1.00057 0.90378 1.00157 1.21354 0.92207 0.87166 1.08590 1.98318 1.77085 1.31652 1.97075 1.17945 0.86896 0.86480 1.04147 1.84771 1.75178 1.35083 1.34733 0.90220 0.90055 0.90215 0.84167 0.86446 0.86258 0.87321 0.88189 0.90064 0.86856 0.73977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.99 9.78 71.23 0.70 -1.30 16 2 C -0.10 -2.82 5.89 -19.81 -0.12 -2.94 16 3 C -0.11 -3.78 9.16 22.52 0.21 -3.57 16 4 C 0.01 0.27 4.92 -20.03 -0.10 0.18 16 5 C -0.20 -9.18 5.52 -19.61 -0.11 -9.29 16 6 C -0.07 -3.14 9.51 22.46 0.21 -2.93 16 7 C -0.24 -9.97 10.03 22.39 0.22 -9.75 16 8 C -0.11 -4.73 9.96 22.02 0.22 -4.52 16 9 C -0.19 -9.45 8.62 22.46 0.19 -9.25 16 10 C 0.10 5.25 5.55 -21.11 -0.12 5.14 16 11 C -0.47 -24.25 7.13 23.34 0.17 -24.09 16 12 H 0.07 3.83 6.64 -2.91 -0.02 3.81 16 13 C 0.04 2.06 5.14 85.28 0.44 2.49 16 14 N -0.82 -41.71 11.03 21.84 0.24 -41.47 16 15 Si 0.96 38.03 29.59 68.60 2.03 40.06 16 16 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 17 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 18 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 19 C -0.10 -4.07 7.77 22.54 0.18 -3.90 16 20 C -0.07 -2.39 6.33 22.38 0.14 -2.25 16 21 Cl -0.07 -2.33 28.49 -2.72 -0.08 -2.40 16 22 C 0.09 2.82 6.68 22.64 0.15 2.97 16 23 O -0.49 -12.18 11.98 -91.65 -1.10 -13.28 16 24 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.08 1.39 7.53 -2.38 -0.02 1.37 16 26 H 0.08 1.41 8.08 -2.38 -0.02 1.39 16 27 H 0.14 4.24 8.04 -2.91 -0.02 4.22 16 28 H 0.12 4.22 8.04 -2.91 -0.02 4.20 16 29 H 0.12 4.16 8.06 -2.91 -0.02 4.14 16 30 H 0.11 4.29 8.06 -2.91 -0.02 4.26 16 31 H 0.10 5.34 6.26 -2.91 -0.02 5.32 16 32 H 0.29 13.36 8.29 -92.71 -0.77 12.59 16 33 H 0.11 5.34 7.33 -2.91 -0.02 5.32 16 34 H 0.40 6.54 9.06 -74.06 -0.67 5.86 16 Total: -1.00 -58.28 307.95 3.95 -54.33 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: 0.47 Total: 25.76 kcal Atomic # 6 Polarization: -65.38 SS G_CDS: 2.39 Total: -63.00 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: 0.24 Total: -41.47 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -1.10 Total: -13.28 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 2.03 Total: 40.06 kcal Atomic # 17 Polarization: -2.33 SS G_CDS: -0.08 Total: -2.40 kcal Total: -58.28 3.95 -54.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244537498.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.320 kcal (2) G-P(sol) polarization free energy of solvation -58.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds