Wall clock time and date at job start Tue Mar 31 2020 05:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38605 * 119.82783 * 2 1 4 4 C 1.38156 * 120.40254 * 180.02562 * 3 2 1 5 5 Cl 1.73598 * 119.97330 * 179.97438 * 4 3 2 6 6 C 1.38929 * 120.04884 * 359.69370 * 4 3 2 7 7 N 1.39187 * 120.17271 * 180.29484 * 6 4 3 8 8 C 1.40376 * 119.65432 * 0.57617 * 6 4 3 9 9 C 1.47567 * 120.19910 * 179.71944 * 8 6 4 10 10 N 1.32674 * 120.00499 * 308.86604 * 9 8 6 11 11 C 1.31731 * 121.70493 * 179.97438 * 10 9 8 12 12 C 1.38889 * 121.51623 * 0.02562 * 11 10 9 13 13 C 1.36864 * 119.82453 * 359.97438 * 12 11 10 14 14 C 1.41122 * 118.40791 * 0.27711 * 13 12 11 15 15 C 1.40827 * 120.72263 * 179.70211 * 14 13 12 16 16 H 1.08004 * 119.99372 * 149.08380 * 15 14 13 17 17 C 1.40036 * 120.00129 * 329.08416 * 15 14 13 18 18 N 1.30790 * 120.00291 * 348.80624 * 17 15 14 19 19 Si 1.86805 * 119.99786 * 168.80515 * 17 15 14 20 20 H 1.48505 * 109.46869 * 60.00095 * 19 17 15 21 21 H 1.48502 * 109.47028 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47393 * 300.00246 * 19 17 15 23 23 C 1.37785 * 119.82051 * 180.02562 * 2 1 3 24 24 H 1.09004 * 109.46908 * 269.98137 * 1 2 3 25 25 H 1.09000 * 109.46665 * 29.97703 * 1 2 3 26 26 H 1.08995 * 109.47420 * 149.97927 * 1 2 3 27 27 H 1.08004 * 119.79600 * 359.97438 * 3 2 1 28 28 H 0.97002 * 120.00252 * 173.62393 * 7 6 4 29 29 H 0.96998 * 119.99995 * 353.62802 * 7 6 4 30 30 H 1.07998 * 119.23697 * 180.02562 * 11 10 9 31 31 H 1.08000 * 120.08342 * 179.97438 * 12 11 10 32 32 H 1.08003 * 120.79564 * 180.02562 * 13 12 11 33 33 H 0.96998 * 120.00219 * 180.02562 * 18 17 15 34 34 H 1.07995 * 120.03323 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.2024 0.0000 4 6 3.5779 1.2163 -0.0005 5 17 4.4301 2.7287 -0.0012 6 6 4.2856 0.0208 0.0054 7 7 5.6774 0.0318 0.0110 8 6 3.5897 -1.1983 -0.0004 9 6 4.3293 -2.4752 -0.0005 10 7 5.2894 -2.6858 -0.8917 11 6 5.9710 -3.8127 -0.9218 12 6 5.7178 -4.8387 -0.0206 13 6 4.7406 -4.6877 0.9257 14 6 4.0099 -3.4806 0.9497 15 6 2.9895 -3.2759 1.8984 16 1 2.7813 -2.2802 2.2611 17 6 2.2448 -4.3635 2.3714 18 7 2.3402 -5.5272 1.7821 19 14 1.1151 -4.1521 3.8440 20 1 0.0905 -3.1216 3.5379 21 1 0.4444 -5.4429 4.1427 22 1 1.9118 -3.7234 5.0216 23 6 2.1922 -1.1954 -0.0005 24 1 -0.3633 -0.0003 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3634 -0.8897 -0.5141 27 1 1.6503 2.1342 -0.0004 28 1 6.1687 -0.7990 0.1084 29 1 6.1562 0.8702 -0.0823 30 1 6.7446 -3.9416 -1.6643 31 1 6.2905 -5.7531 -0.0664 32 1 4.5308 -5.4752 1.6344 33 1 1.8241 -6.2804 2.1095 34 1 1.6498 -2.1293 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244555856.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:31 Heat of formation + Delta-G solvation = 27.913855 kcal Electronic energy + Delta-G solvation = -20134.157352 eV Core-core repulsion = 17056.284943 eV Total energy + Delta-G solvation = -3077.872409 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.34894 -37.92554 -36.00669 -34.57677 -34.09372 -31.64034 -30.67283 -30.13730 -28.57040 -25.87467 -25.14803 -22.91206 -21.82580 -21.01118 -19.73113 -17.43000 -16.64021 -16.50432 -15.84642 -15.35181 -14.51898 -14.37740 -13.86673 -13.67274 -13.47326 -13.29440 -12.77940 -12.55613 -12.34806 -11.98629 -11.82667 -11.59151 -11.44079 -11.23212 -11.12384 -10.99675 -10.80162 -10.63451 -10.46903 -9.88531 -9.74713 -9.46016 -8.55753 -8.14919 -8.04353 -7.55927 -6.96965 -6.68508 -4.57924 1.76567 2.11575 2.55804 2.65298 2.88093 2.97203 3.00731 3.11249 3.79337 4.34298 4.47354 4.54483 5.28639 5.37008 5.58703 5.68710 5.81139 5.93210 6.03677 6.07129 6.17301 6.32217 6.42190 6.57091 6.61704 6.63323 6.82074 6.96780 7.04975 7.10373 7.28946 7.43867 7.62491 7.79172 7.83365 8.05268 8.31960 8.37280 8.55770 8.62245 9.47017 9.97755 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.014086 B = 0.007102 C = 0.005286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.316663 B = 3941.750044 C = 5296.082644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.147 4.147 3 C -0.077 4.077 4 C -0.122 4.122 5 Cl -0.097 7.097 6 C 0.238 3.762 7 N -0.859 5.859 8 C -0.041 4.041 9 C 0.023 3.977 10 N -0.456 5.456 11 C -0.033 4.033 12 C -0.150 4.150 13 C -0.125 4.125 14 C 0.088 3.912 15 C -0.440 4.440 16 H 0.087 0.913 17 C 0.075 3.925 18 N -0.792 5.792 19 Si 0.909 3.091 20 H -0.260 1.260 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.037 4.037 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.120 0.880 28 H 0.406 0.594 29 H 0.390 0.610 30 H 0.121 0.879 31 H 0.098 0.902 32 H 0.124 0.876 33 H 0.285 0.715 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.840 6.913 -0.283 6.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.150 4.150 3 C -0.097 4.097 4 C -0.154 4.154 5 Cl -0.069 7.069 6 C 0.129 3.871 7 N -0.398 5.398 8 C -0.047 4.047 9 C -0.115 4.115 10 N -0.164 5.164 11 C -0.194 4.194 12 C -0.171 4.171 13 C -0.151 4.151 14 C 0.083 3.917 15 C -0.469 4.469 16 H 0.105 0.895 17 C -0.144 4.144 18 N -0.416 5.416 19 Si 0.733 3.267 20 H -0.184 1.184 21 H -0.202 1.202 22 H -0.187 1.187 23 C -0.057 4.057 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.138 0.862 28 H 0.237 0.763 29 H 0.219 0.781 30 H 0.138 0.862 31 H 0.116 0.884 32 H 0.142 0.858 33 H 0.096 0.904 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.682 7.419 -0.876 7.501 hybrid contribution -0.177 -0.731 1.238 1.449 sum -0.858 6.688 0.362 6.752 Atomic orbital electron populations 1.20587 0.91500 1.01828 1.01602 1.19386 0.95610 0.92190 1.07784 1.20476 0.91013 0.97826 1.00370 1.20062 0.92220 0.83976 1.19099 1.98275 1.78233 1.32567 1.97794 1.17532 0.84651 0.91262 0.93631 1.42409 1.03058 1.12023 1.82353 1.17818 0.92141 0.89195 1.05532 1.19328 1.00229 0.95263 0.96669 1.67112 1.05478 1.22468 1.21299 1.21680 1.03521 0.91462 1.02689 1.21429 0.99237 0.98589 0.97817 1.21374 0.94860 0.99330 0.99560 1.18343 0.91501 0.90996 0.90823 1.19498 1.13316 0.95061 1.19019 0.89527 1.25965 0.97207 0.94363 0.96858 1.69735 1.34527 1.01742 1.35625 0.86316 0.80233 0.78756 0.81393 1.18419 1.20203 1.18670 1.21104 0.92696 0.97612 0.94256 0.92027 0.92498 0.91925 0.86224 0.76269 0.78142 0.86188 0.88371 0.85845 0.90405 0.84947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.38 10.00 36.01 0.36 -1.02 16 2 C -0.15 -2.56 5.88 -104.65 -0.61 -3.17 16 3 C -0.08 -1.29 9.46 -39.48 -0.37 -1.66 16 4 C -0.12 -2.16 6.33 -39.36 -0.25 -2.41 16 5 Cl -0.10 -1.46 27.60 -51.86 -1.43 -2.89 16 6 C 0.24 4.67 6.75 -83.46 -0.56 4.11 16 7 N -0.86 -15.41 8.81 32.61 0.29 -15.12 16 8 C -0.04 -0.89 5.06 -104.72 -0.53 -1.42 16 9 C 0.02 0.55 5.69 -82.27 -0.47 0.08 16 10 N -0.46 -10.50 8.87 -9.20 -0.08 -10.58 16 11 C -0.03 -0.72 11.16 -17.35 -0.19 -0.91 16 12 C -0.15 -3.28 10.03 -39.84 -0.40 -3.68 16 13 C -0.13 -3.02 8.70 -38.99 -0.34 -3.36 16 14 C 0.09 2.18 5.52 -106.39 -0.59 1.59 16 15 C -0.44 -10.64 7.02 -37.93 -0.27 -10.91 16 16 H 0.09 2.08 6.88 -52.48 -0.36 1.72 16 17 C 0.07 1.73 5.25 -17.32 -0.09 1.64 16 18 N -0.79 -18.87 11.05 55.55 0.61 -18.25 16 19 Si 0.91 17.53 29.58 -169.99 -5.03 12.50 16 20 H -0.26 -4.95 7.11 56.52 0.40 -4.54 16 21 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 22 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 23 C -0.04 -0.75 7.74 -39.18 -0.30 -1.05 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 26 H 0.06 0.85 8.08 -51.93 -0.42 0.43 16 27 H 0.12 1.69 8.06 -52.48 -0.42 1.27 16 28 H 0.41 7.71 6.80 -40.82 -0.28 7.43 16 29 H 0.39 6.06 7.52 -40.82 -0.31 5.75 16 30 H 0.12 2.27 8.06 -52.49 -0.42 1.84 16 31 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 32 H 0.12 3.03 6.51 -52.48 -0.34 2.69 16 33 H 0.28 6.23 8.30 -40.82 -0.34 5.89 16 34 H 0.13 2.82 7.35 -52.49 -0.39 2.43 16 LS Contribution 303.65 15.07 4.58 4.58 Total: -1.00 -25.41 303.65 -9.02 -34.43 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -3.34 Total: 17.52 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: -4.62 Total: -22.18 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: 0.82 Total: -43.95 kcal Atomic # 14 Polarization: 17.53 SS G_CDS: -5.03 Total: 12.50 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -1.43 Total: -2.89 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -25.41 -9.02 -34.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244555856.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.344 kcal (2) G-P(sol) polarization free energy of solvation -25.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds