Wall clock time and date at job start Tue Mar 31 2020 05:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38605 * 119.82783 * 2 1 4 4 C 1.38156 * 120.40254 * 180.02562 * 3 2 1 5 5 Cl 1.73598 * 119.97330 * 179.97438 * 4 3 2 6 6 C 1.38929 * 120.04884 * 359.69370 * 4 3 2 7 7 N 1.39187 * 120.17271 * 180.29484 * 6 4 3 8 8 C 1.40376 * 119.65432 * 0.57617 * 6 4 3 9 9 C 1.47567 * 120.19910 * 179.71944 * 8 6 4 10 10 N 1.32674 * 120.00499 * 308.86604 * 9 8 6 11 11 C 1.31731 * 121.70493 * 179.97438 * 10 9 8 12 12 C 1.38889 * 121.51623 * 0.02562 * 11 10 9 13 13 C 1.36864 * 119.82453 * 359.97438 * 12 11 10 14 14 C 1.41122 * 118.40791 * 0.27711 * 13 12 11 15 15 C 1.40827 * 120.72263 * 179.70211 * 14 13 12 16 16 H 1.08004 * 119.99372 * 149.08380 * 15 14 13 17 17 C 1.40036 * 120.00129 * 329.08416 * 15 14 13 18 18 N 1.30790 * 120.00291 * 348.80624 * 17 15 14 19 19 Si 1.86805 * 119.99786 * 168.80515 * 17 15 14 20 20 H 1.48505 * 109.46869 * 60.00095 * 19 17 15 21 21 H 1.48502 * 109.47028 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47393 * 300.00246 * 19 17 15 23 23 C 1.37785 * 119.82051 * 180.02562 * 2 1 3 24 24 H 1.09004 * 109.46908 * 269.98137 * 1 2 3 25 25 H 1.09000 * 109.46665 * 29.97703 * 1 2 3 26 26 H 1.08995 * 109.47420 * 149.97927 * 1 2 3 27 27 H 1.08004 * 119.79600 * 359.97438 * 3 2 1 28 28 H 0.97002 * 120.00252 * 173.62393 * 7 6 4 29 29 H 0.96998 * 119.99995 * 353.62802 * 7 6 4 30 30 H 1.07998 * 119.23697 * 180.02562 * 11 10 9 31 31 H 1.08000 * 120.08342 * 179.97438 * 12 11 10 32 32 H 1.08003 * 120.79564 * 180.02562 * 13 12 11 33 33 H 0.96998 * 120.00219 * 180.02562 * 18 17 15 34 34 H 1.07995 * 120.03323 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.2024 0.0000 4 6 3.5779 1.2163 -0.0005 5 17 4.4301 2.7287 -0.0012 6 6 4.2856 0.0208 0.0054 7 7 5.6774 0.0318 0.0110 8 6 3.5897 -1.1983 -0.0004 9 6 4.3293 -2.4752 -0.0005 10 7 5.2894 -2.6858 -0.8917 11 6 5.9710 -3.8127 -0.9218 12 6 5.7178 -4.8387 -0.0206 13 6 4.7406 -4.6877 0.9257 14 6 4.0099 -3.4806 0.9497 15 6 2.9895 -3.2759 1.8984 16 1 2.7813 -2.2802 2.2611 17 6 2.2448 -4.3635 2.3714 18 7 2.3402 -5.5272 1.7821 19 14 1.1151 -4.1521 3.8440 20 1 0.0905 -3.1216 3.5379 21 1 0.4444 -5.4429 4.1427 22 1 1.9118 -3.7234 5.0216 23 6 2.1922 -1.1954 -0.0005 24 1 -0.3633 -0.0003 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3634 -0.8897 -0.5141 27 1 1.6503 2.1342 -0.0004 28 1 6.1687 -0.7990 0.1084 29 1 6.1562 0.8702 -0.0823 30 1 6.7446 -3.9416 -1.6643 31 1 6.2905 -5.7531 -0.0664 32 1 4.5308 -5.4752 1.6344 33 1 1.8241 -6.2804 2.1095 34 1 1.6498 -2.1293 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244555856.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:30 Heat of formation + Delta-G solvation = 15.513510 kcal Electronic energy + Delta-G solvation = -20134.695071 eV Core-core repulsion = 17056.284943 eV Total energy + Delta-G solvation = -3078.410128 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.91177 -39.53572 -37.31717 -36.10328 -35.72722 -33.24478 -32.45044 -31.44608 -30.17953 -27.59905 -26.50246 -24.50653 -23.53535 -22.57676 -21.27164 -19.21111 -18.09154 -17.96192 -17.50783 -16.93539 -16.20727 -15.91379 -15.39630 -15.15794 -14.82772 -14.69452 -14.38092 -14.09316 -13.73530 -13.63561 -13.26204 -13.16470 -13.00811 -12.78575 -12.57641 -12.37500 -12.30737 -12.09378 -11.81427 -11.54936 -11.20470 -11.09289 -10.26327 -9.92377 -9.70353 -9.19241 -8.68045 -8.15429 -6.39169 0.24375 0.65175 0.89357 1.12139 1.30845 1.39142 1.49086 1.52198 2.18650 2.73958 2.89333 3.08128 3.65440 3.83997 4.13607 4.29537 4.49107 4.51704 4.52932 4.61065 4.82071 4.89566 4.97968 5.03079 5.12935 5.17318 5.23787 5.27536 5.40138 5.56475 5.79586 5.84626 5.95847 6.05353 6.09552 6.51814 6.59315 6.76632 6.82726 6.98995 7.69845 8.26959 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.014086 B = 0.007102 C = 0.005286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.316663 B = 3941.750044 C = 5296.082644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.145 4.145 3 C -0.068 4.068 4 C -0.126 4.126 5 Cl -0.071 7.071 6 C 0.225 3.775 7 N -0.855 5.855 8 C -0.075 4.075 9 C 0.019 3.981 10 N -0.466 5.466 11 C -0.036 4.036 12 C -0.150 4.150 13 C -0.148 4.148 14 C 0.059 3.941 15 C -0.458 4.458 16 H 0.079 0.921 17 C 0.041 3.959 18 N -0.822 5.822 19 Si 0.972 3.028 20 H -0.254 1.254 21 H -0.268 1.268 22 H -0.263 1.263 23 C -0.051 4.051 24 H 0.070 0.930 25 H 0.084 0.916 26 H 0.060 0.940 27 H 0.153 0.847 28 H 0.400 0.600 29 H 0.401 0.599 30 H 0.152 0.848 31 H 0.127 0.873 32 H 0.111 0.889 33 H 0.291 0.709 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.553 8.645 -0.249 8.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.148 4.148 3 C -0.087 4.087 4 C -0.157 4.157 5 Cl -0.043 7.043 6 C 0.116 3.884 7 N -0.395 5.395 8 C -0.081 4.081 9 C -0.119 4.119 10 N -0.174 5.174 11 C -0.196 4.196 12 C -0.170 4.170 13 C -0.174 4.174 14 C 0.055 3.945 15 C -0.487 4.487 16 H 0.097 0.903 17 C -0.175 4.175 18 N -0.447 5.447 19 Si 0.792 3.208 20 H -0.178 1.178 21 H -0.192 1.192 22 H -0.187 1.187 23 C -0.071 4.071 24 H 0.089 0.911 25 H 0.103 0.897 26 H 0.079 0.921 27 H 0.171 0.829 28 H 0.230 0.770 29 H 0.231 0.769 30 H 0.169 0.831 31 H 0.145 0.855 32 H 0.129 0.871 33 H 0.102 0.898 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.379 9.167 -0.858 9.309 hybrid contribution 0.122 -1.184 1.132 1.643 sum -1.257 7.982 0.274 8.086 Atomic orbital electron populations 1.20652 0.88973 1.03183 1.02565 1.19723 0.97434 0.91329 1.06294 1.20860 0.90746 0.98789 0.98341 1.20224 0.92879 0.84530 1.18091 1.98282 1.77823 1.30500 1.97655 1.17614 0.85218 0.91419 0.94099 1.42343 1.02638 1.12245 1.82260 1.17911 0.92814 0.89251 1.08104 1.19671 1.00123 0.95985 0.96113 1.67205 1.05791 1.23105 1.21338 1.22248 1.03597 0.90905 1.02885 1.21707 0.98629 0.99772 0.96904 1.21402 0.96190 0.99266 1.00589 1.18686 0.92290 0.91857 0.91714 1.19529 1.14076 0.95169 1.19915 0.90318 1.26672 0.98204 0.93753 0.98887 1.69782 1.35582 1.02474 1.36860 0.85379 0.78417 0.79083 0.77887 1.17770 1.19196 1.18745 1.21039 0.92405 0.98028 0.95615 0.91146 0.89671 0.92106 0.82902 0.77007 0.76902 0.83117 0.85499 0.87092 0.89831 0.87180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.49 10.00 71.24 0.71 -1.78 16 2 C -0.15 -4.84 5.88 -19.88 -0.12 -4.96 16 3 C -0.07 -2.10 9.46 22.34 0.21 -1.88 16 4 C -0.13 -4.22 6.33 22.42 0.14 -4.08 16 5 Cl -0.07 -1.96 27.60 -2.72 -0.08 -2.04 16 6 C 0.23 8.77 6.75 38.66 0.26 9.04 16 7 N -0.86 -30.40 8.81 -50.75 -0.45 -30.85 16 8 C -0.08 -3.32 5.06 -19.93 -0.10 -3.42 16 9 C 0.02 0.94 5.69 42.40 0.24 1.18 16 10 N -0.47 -21.69 8.87 -183.01 -1.62 -23.31 16 11 C -0.04 -1.56 11.16 84.86 0.95 -0.62 16 12 C -0.15 -6.57 10.03 22.10 0.22 -6.34 16 13 C -0.15 -7.39 8.70 22.66 0.20 -7.20 16 14 C 0.06 3.04 5.52 -21.01 -0.12 2.92 16 15 C -0.46 -23.01 7.02 23.34 0.16 -22.84 16 16 H 0.08 3.95 6.88 -2.91 -0.02 3.93 16 17 C 0.04 1.92 5.25 85.28 0.45 2.37 16 18 N -0.82 -40.28 11.05 21.84 0.24 -40.04 16 19 Si 0.97 36.17 29.58 68.60 2.03 38.20 16 20 H -0.25 -9.11 7.11 99.48 0.71 -8.40 16 21 H -0.27 -9.45 7.11 99.48 0.71 -8.75 16 22 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 23 C -0.05 -2.10 7.74 22.53 0.17 -1.93 16 24 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.08 1.70 8.08 -2.39 -0.02 1.68 16 26 H 0.06 1.57 8.08 -2.39 -0.02 1.56 16 27 H 0.15 3.66 8.06 -2.91 -0.02 3.63 16 28 H 0.40 15.29 6.80 -92.71 -0.63 14.66 16 29 H 0.40 12.05 7.52 -92.71 -0.70 11.35 16 30 H 0.15 5.42 8.06 -2.91 -0.02 5.40 16 31 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 32 H 0.11 5.69 6.51 -2.91 -0.02 5.68 16 33 H 0.29 12.98 8.30 -92.71 -0.77 12.21 16 34 H 0.11 4.93 7.35 -2.91 -0.02 4.91 16 Total: -1.00 -55.75 303.65 3.35 -52.40 By element: Atomic # 1 Polarization: 45.33 SS G_CDS: -0.16 Total: 45.16 kcal Atomic # 6 Polarization: -42.92 SS G_CDS: 3.39 Total: -39.53 kcal Atomic # 7 Polarization: -92.37 SS G_CDS: -1.83 Total: -94.20 kcal Atomic # 14 Polarization: 36.17 SS G_CDS: 2.03 Total: 38.20 kcal Atomic # 17 Polarization: -1.96 SS G_CDS: -0.08 Total: -2.04 kcal Total: -55.75 3.35 -52.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244555856.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.918 kcal (2) G-P(sol) polarization free energy of solvation -55.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds