Wall clock time and date at job start Tue Mar 31 2020 05:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38579 * 119.83044 * 2 1 4 4 C 1.38162 * 120.38972 * 179.97438 * 3 2 1 5 5 Cl 1.73595 * 119.97768 * 180.02562 * 4 3 2 6 6 C 1.38925 * 120.04307 * 359.97438 * 4 3 2 7 7 N 1.39226 * 120.17245 * 179.97438 * 6 4 3 8 8 C 1.40308 * 119.66575 * 0.02562 * 6 4 3 9 9 C 1.47723 * 120.19745 * 180.02562 * 8 6 4 10 10 C 1.40016 * 119.46165 * 131.93646 * 9 8 6 11 11 C 1.36535 * 119.46621 * 179.97438 * 10 9 8 12 12 C 1.41345 * 118.42203 * 0.02562 * 11 10 9 13 13 C 1.41013 * 120.54174 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99601 * 204.16832 * 13 12 11 15 15 C 1.39987 * 120.00251 * 24.17678 * 13 12 11 16 16 N 1.30825 * 119.99753 * 17.05253 * 15 13 12 17 17 Si 1.86797 * 120.00272 * 197.05725 * 15 13 12 18 18 H 1.48497 * 109.47108 * 89.99038 * 17 15 13 19 19 H 1.48498 * 109.47370 * 209.99750 * 17 15 13 20 20 H 1.48503 * 109.46574 * 329.99759 * 17 15 13 21 21 C 1.40956 * 118.91100 * 359.97438 * 12 11 10 22 22 N 1.31251 * 120.40648 * 359.75185 * 21 12 11 23 23 C 1.37811 * 119.82808 * 179.97438 * 2 1 3 24 24 H 1.09003 * 109.47245 * 89.99440 * 1 2 3 25 25 H 1.08998 * 109.47110 * 209.99726 * 1 2 3 26 26 H 1.09005 * 109.46946 * 329.99897 * 1 2 3 27 27 H 1.08003 * 119.80696 * 0.26375 * 3 2 1 28 28 H 0.97002 * 119.99886 * 352.93221 * 7 6 4 29 29 H 0.96998 * 120.00464 * 172.92556 * 7 6 4 30 30 H 1.08006 * 120.26983 * 0.02562 * 10 9 8 31 31 H 1.07998 * 120.78873 * 180.02562 * 11 10 9 32 32 H 0.96998 * 119.99605 * 180.02562 * 16 15 13 33 33 H 1.07997 * 119.79294 * 180.02562 * 21 12 11 34 34 H 1.08000 * 120.02847 * 0.03970 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.2022 0.0000 4 6 3.5779 1.2157 0.0005 5 17 4.4306 2.7278 0.0012 6 6 4.2851 0.0199 0.0016 7 7 5.6774 0.0303 0.0016 8 6 3.5893 -1.1985 0.0016 9 6 4.3295 -2.4769 0.0033 10 6 3.9684 -3.4805 0.9104 11 6 4.6521 -4.6623 0.9117 12 6 5.7093 -4.8289 -0.0116 13 6 6.4455 -6.0310 -0.0486 14 1 7.4519 -6.0360 -0.4407 15 6 5.8720 -7.2179 0.4226 16 7 4.5762 -7.2998 0.5824 17 14 6.9570 -8.6847 0.8234 18 1 7.3779 -8.6151 2.2458 19 1 6.1977 -9.9399 0.5927 20 1 8.1581 -8.6651 -0.0497 21 6 6.0155 -3.7738 -0.8946 22 7 5.3253 -2.6580 -0.8610 23 6 2.1925 -1.1955 0.0005 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6504 2.1341 0.0043 28 1 6.1561 0.8676 -0.1025 29 1 6.1687 -0.7995 0.1058 30 1 3.1551 -3.3214 1.6030 31 1 4.3914 -5.4510 1.6019 32 1 4.1789 -8.1221 0.9092 33 1 6.8201 -3.8860 -1.6062 34 1 1.6501 -2.1295 0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244556078.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:32 Heat of formation + Delta-G solvation = 25.376132 kcal Electronic energy + Delta-G solvation = -19386.106859 eV Core-core repulsion = 16308.124406 eV Total energy + Delta-G solvation = -3077.982453 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.44969 -38.02314 -36.16873 -34.79167 -34.12355 -31.54484 -30.72101 -30.31756 -29.06213 -25.85901 -25.26310 -22.76853 -22.03398 -21.05337 -20.01282 -17.53284 -16.85038 -16.65120 -15.77932 -15.48379 -14.67256 -14.22784 -14.04231 -13.78975 -13.69733 -13.50144 -12.76735 -12.73691 -12.46444 -12.07767 -11.89981 -11.78295 -11.60855 -11.34211 -11.19797 -11.12655 -10.89703 -10.73127 -10.52480 -9.99027 -9.91377 -9.54826 -8.56482 -8.37825 -8.09485 -7.64752 -7.03549 -6.87481 -4.61004 1.55024 1.89824 2.45476 2.56289 2.88219 2.93401 2.96140 3.06308 3.71964 4.08906 4.36895 4.46381 5.12213 5.21424 5.48865 5.52342 5.64285 5.70264 5.82791 5.88664 6.08122 6.17074 6.30509 6.41653 6.53298 6.61540 6.75705 6.85184 6.89056 7.02762 7.14097 7.18525 7.61767 7.72689 7.82177 7.92482 8.24566 8.30520 8.49351 8.57555 9.47788 9.86720 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.027669 B = 0.003902 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.730627 B = 7173.843203 C = 7995.480193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.142 4.142 3 C -0.079 4.079 4 C -0.119 4.119 5 Cl -0.092 7.092 6 C 0.242 3.758 7 N -0.856 5.856 8 C -0.048 4.048 9 C 0.002 3.998 10 C -0.120 4.120 11 C -0.141 4.141 12 C 0.069 3.931 13 C -0.439 4.439 14 H 0.086 0.914 15 C 0.073 3.927 16 N -0.779 5.779 17 Si 0.915 3.085 18 H -0.265 1.265 19 H -0.275 1.275 20 H -0.259 1.259 21 C -0.023 4.023 22 N -0.451 5.451 23 C -0.066 4.066 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.122 0.878 28 H 0.391 0.609 29 H 0.409 0.591 30 H 0.099 0.901 31 H 0.127 0.873 32 H 0.286 0.714 33 H 0.128 0.872 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.390 9.075 1.406 9.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.144 4.144 3 C -0.098 4.098 4 C -0.151 4.151 5 Cl -0.064 7.064 6 C 0.133 3.867 7 N -0.395 5.395 8 C -0.053 4.053 9 C -0.133 4.133 10 C -0.141 4.141 11 C -0.166 4.166 12 C 0.064 3.936 13 C -0.468 4.468 14 H 0.104 0.896 15 C -0.147 4.147 16 N -0.403 5.403 17 Si 0.739 3.261 18 H -0.190 1.190 19 H -0.200 1.200 20 H -0.183 1.183 21 C -0.187 4.187 22 N -0.159 5.159 23 C -0.086 4.086 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.140 0.860 28 H 0.220 0.780 29 H 0.241 0.759 30 H 0.117 0.883 31 H 0.144 0.856 32 H 0.097 0.903 33 H 0.146 0.854 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.315 9.682 0.902 10.274 hybrid contribution 0.623 -1.365 0.712 1.661 sum -2.692 8.318 1.614 8.890 Atomic orbital electron populations 1.20605 0.91337 1.02058 1.01642 1.19355 0.95620 0.92147 1.07314 1.20489 0.91043 0.97896 1.00377 1.20133 0.92295 0.84273 1.18380 1.98289 1.78101 1.32252 1.97713 1.17497 0.84840 0.91127 0.93260 1.42510 1.02966 1.12540 1.81450 1.18049 0.92018 0.89962 1.05298 1.18581 1.00137 0.93554 1.01067 1.21271 0.99570 0.94297 0.98955 1.21336 0.98869 0.96263 1.00154 1.18587 0.91840 0.93433 0.89740 1.19634 1.01096 0.91772 1.34309 0.89621 1.26058 0.95146 1.00949 0.92584 1.69791 1.11162 1.28596 1.30717 0.86180 0.80684 0.79177 0.80066 1.19005 1.20031 1.18281 1.22438 1.02906 0.91561 1.01764 1.67053 1.04910 1.24156 1.19744 1.20989 0.92541 0.97414 0.97696 0.91982 0.91909 0.92253 0.86018 0.78029 0.75859 0.88302 0.85565 0.90261 0.85434 0.85870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.14 10.00 36.01 0.36 -0.78 16 2 C -0.14 -2.12 5.88 -104.65 -0.61 -2.74 16 3 C -0.08 -1.16 9.46 -39.48 -0.37 -1.54 16 4 C -0.12 -1.93 6.33 -39.35 -0.25 -2.17 16 5 Cl -0.09 -1.28 27.60 -51.86 -1.43 -2.71 16 6 C 0.24 4.40 6.74 -83.47 -0.56 3.83 16 7 N -0.86 -14.57 8.77 32.60 0.29 -14.28 16 8 C -0.05 -0.94 5.62 -104.70 -0.59 -1.52 16 9 C 0.00 0.04 5.75 -82.78 -0.48 -0.44 16 10 C -0.12 -2.71 9.40 -39.53 -0.37 -3.08 16 11 C -0.14 -3.43 8.74 -39.02 -0.34 -3.77 16 12 C 0.07 1.71 5.59 -106.64 -0.60 1.11 16 13 C -0.44 -10.67 9.06 -37.88 -0.34 -11.01 16 14 H 0.09 1.97 7.90 -52.48 -0.41 1.55 16 15 C 0.07 1.68 5.18 -17.33 -0.09 1.59 16 16 N -0.78 -18.56 10.91 55.55 0.61 -17.95 16 17 Si 0.92 17.12 29.59 -169.99 -5.03 12.09 16 18 H -0.27 -4.93 7.11 56.52 0.40 -4.52 16 19 H -0.28 -5.07 7.11 56.52 0.40 -4.66 16 20 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 21 C -0.02 -0.54 10.97 -16.77 -0.18 -0.72 16 22 N -0.45 -10.40 8.61 -9.13 -0.08 -10.48 16 23 C -0.07 -1.15 9.07 -39.20 -0.36 -1.51 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 26 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 27 H 0.12 1.52 8.06 -52.48 -0.42 1.09 16 28 H 0.39 5.77 7.53 -40.82 -0.31 5.46 16 29 H 0.41 7.53 6.67 -40.82 -0.27 7.26 16 30 H 0.10 2.00 7.98 -52.48 -0.42 1.59 16 31 H 0.13 3.13 6.20 -52.49 -0.33 2.81 16 32 H 0.29 6.16 8.30 -40.82 -0.34 5.83 16 33 H 0.13 2.80 8.06 -52.49 -0.42 2.37 16 34 H 0.12 2.06 7.99 -52.49 -0.42 1.64 16 LS Contribution 307.59 15.07 4.64 4.64 Total: -1.00 -25.59 307.59 -9.20 -34.78 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -3.40 Total: 16.68 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: -4.78 Total: -22.75 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: 0.81 Total: -42.72 kcal Atomic # 14 Polarization: 17.12 SS G_CDS: -5.03 Total: 12.09 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -1.43 Total: -2.71 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -25.59 -9.20 -34.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244556078.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.160 kcal (2) G-P(sol) polarization free energy of solvation -25.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds