Wall clock time and date at job start Tue Mar 31 2020 05:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38579 * 119.83044 * 2 1 4 4 C 1.38162 * 120.38972 * 179.97438 * 3 2 1 5 5 Cl 1.73595 * 119.97768 * 180.02562 * 4 3 2 6 6 C 1.38925 * 120.04307 * 359.97438 * 4 3 2 7 7 N 1.39226 * 120.17245 * 179.97438 * 6 4 3 8 8 C 1.40308 * 119.66575 * 0.02562 * 6 4 3 9 9 C 1.47723 * 120.19745 * 180.02562 * 8 6 4 10 10 C 1.40016 * 119.46165 * 131.93646 * 9 8 6 11 11 C 1.36535 * 119.46621 * 179.97438 * 10 9 8 12 12 C 1.41345 * 118.42203 * 0.02562 * 11 10 9 13 13 C 1.41013 * 120.54174 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99601 * 204.16832 * 13 12 11 15 15 C 1.39987 * 120.00251 * 24.17678 * 13 12 11 16 16 N 1.30825 * 119.99753 * 17.05253 * 15 13 12 17 17 Si 1.86797 * 120.00272 * 197.05725 * 15 13 12 18 18 H 1.48497 * 109.47108 * 89.99038 * 17 15 13 19 19 H 1.48498 * 109.47370 * 209.99750 * 17 15 13 20 20 H 1.48503 * 109.46574 * 329.99759 * 17 15 13 21 21 C 1.40956 * 118.91100 * 359.97438 * 12 11 10 22 22 N 1.31251 * 120.40648 * 359.75185 * 21 12 11 23 23 C 1.37811 * 119.82808 * 179.97438 * 2 1 3 24 24 H 1.09003 * 109.47245 * 89.99440 * 1 2 3 25 25 H 1.08998 * 109.47110 * 209.99726 * 1 2 3 26 26 H 1.09005 * 109.46946 * 329.99897 * 1 2 3 27 27 H 1.08003 * 119.80696 * 0.26375 * 3 2 1 28 28 H 0.97002 * 119.99886 * 352.93221 * 7 6 4 29 29 H 0.96998 * 120.00464 * 172.92556 * 7 6 4 30 30 H 1.08006 * 120.26983 * 0.02562 * 10 9 8 31 31 H 1.07998 * 120.78873 * 180.02562 * 11 10 9 32 32 H 0.96998 * 119.99605 * 180.02562 * 16 15 13 33 33 H 1.07997 * 119.79294 * 180.02562 * 21 12 11 34 34 H 1.08000 * 120.02847 * 0.03970 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.2022 0.0000 4 6 3.5779 1.2157 0.0005 5 17 4.4306 2.7278 0.0012 6 6 4.2851 0.0199 0.0016 7 7 5.6774 0.0303 0.0016 8 6 3.5893 -1.1985 0.0016 9 6 4.3295 -2.4769 0.0033 10 6 3.9684 -3.4805 0.9104 11 6 4.6521 -4.6623 0.9117 12 6 5.7093 -4.8289 -0.0116 13 6 6.4455 -6.0310 -0.0486 14 1 7.4519 -6.0360 -0.4407 15 6 5.8720 -7.2179 0.4226 16 7 4.5762 -7.2998 0.5824 17 14 6.9570 -8.6847 0.8234 18 1 7.3779 -8.6151 2.2458 19 1 6.1977 -9.9399 0.5927 20 1 8.1581 -8.6651 -0.0497 21 6 6.0155 -3.7738 -0.8946 22 7 5.3253 -2.6580 -0.8610 23 6 2.1925 -1.1955 0.0005 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6504 2.1341 0.0043 28 1 6.1561 0.8676 -0.1025 29 1 6.1687 -0.7995 0.1058 30 1 3.1551 -3.3214 1.6030 31 1 4.3914 -5.4510 1.6019 32 1 4.1789 -8.1221 0.9092 33 1 6.8201 -3.8860 -1.6062 34 1 1.6501 -2.1295 0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244556078.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:32 Heat of formation + Delta-G solvation = 13.087990 kcal Electronic energy + Delta-G solvation = -19386.639713 eV Core-core repulsion = 16308.124406 eV Total energy + Delta-G solvation = -3078.515307 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.91252 -39.63303 -37.36495 -36.25052 -35.68712 -33.10185 -32.52200 -31.48236 -30.66146 -27.45139 -26.51665 -24.30976 -23.73693 -22.59701 -21.45425 -19.32787 -18.18012 -18.03185 -17.30453 -17.09555 -16.33008 -15.68657 -15.57497 -15.18454 -14.92349 -14.74561 -14.36666 -14.18212 -13.73942 -13.59481 -13.51784 -13.18415 -13.02509 -12.84554 -12.56145 -12.40705 -12.32334 -12.07088 -11.82397 -11.63383 -11.27605 -11.14791 -10.25708 -10.09325 -9.79773 -9.25782 -8.75778 -8.23530 -6.43874 0.16660 0.58239 0.87234 1.07826 1.26655 1.39011 1.52431 1.52562 2.15879 2.60435 2.86997 3.05075 3.63278 3.77579 4.06528 4.21737 4.31223 4.43672 4.57432 4.62033 4.78685 4.85417 4.98488 4.99700 5.06618 5.13107 5.19027 5.28315 5.32189 5.46053 5.68162 5.81493 5.90179 5.99158 6.02800 6.45991 6.55803 6.69575 6.75251 6.94264 7.66892 8.17414 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.027669 B = 0.003902 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.730627 B = 7173.843203 C = 7995.480193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.137 4.137 3 C -0.069 4.069 4 C -0.124 4.124 5 Cl -0.072 7.072 6 C 0.228 3.772 7 N -0.856 5.856 8 C -0.085 4.085 9 C 0.010 3.990 10 C -0.126 4.126 11 C -0.157 4.157 12 C 0.043 3.957 13 C -0.471 4.471 14 H 0.089 0.911 15 C 0.036 3.964 16 N -0.811 5.811 17 Si 0.988 3.012 18 H -0.261 1.261 19 H -0.267 1.267 20 H -0.255 1.255 21 C -0.038 4.038 22 N -0.457 5.457 23 C -0.072 4.072 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.153 0.847 28 H 0.400 0.600 29 H 0.401 0.599 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.294 0.706 33 H 0.137 0.863 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.447 10.363 1.625 11.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.139 4.139 3 C -0.088 4.088 4 C -0.156 4.156 5 Cl -0.043 7.043 6 C 0.118 3.882 7 N -0.395 5.395 8 C -0.091 4.091 9 C -0.126 4.126 10 C -0.146 4.146 11 C -0.182 4.182 12 C 0.039 3.961 13 C -0.500 4.500 14 H 0.107 0.893 15 C -0.182 4.182 16 N -0.435 5.435 17 Si 0.809 3.191 18 H -0.186 1.186 19 H -0.192 1.192 20 H -0.179 1.179 21 C -0.201 4.201 22 N -0.165 5.165 23 C -0.092 4.092 24 H 0.092 0.908 25 H 0.086 0.914 26 H 0.100 0.900 27 H 0.171 0.829 28 H 0.230 0.770 29 H 0.231 0.769 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.105 0.895 33 H 0.154 0.846 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.374 11.001 1.108 11.891 hybrid contribution 0.826 -1.534 0.628 1.852 sum -3.548 9.467 1.736 10.258 Atomic orbital electron populations 1.20682 0.88526 1.03507 1.02809 1.19732 0.97564 0.91171 1.05445 1.20913 0.90606 0.99144 0.98141 1.20299 0.93026 0.84576 1.17681 1.98296 1.77857 1.30560 1.97604 1.17622 0.85145 0.91528 0.93871 1.42470 1.02856 1.12571 1.81607 1.18071 0.92991 0.89287 1.08762 1.19044 0.99314 0.94536 0.99713 1.21494 0.99843 0.93907 0.99375 1.21348 0.99651 0.96813 1.00436 1.18863 0.92545 0.94287 0.90406 1.19890 1.01498 0.92512 1.36083 0.89312 1.26891 0.96278 1.03308 0.91676 1.69829 1.12671 1.29826 1.31194 0.85090 0.78736 0.75559 0.79763 1.18582 1.19189 1.17861 1.22631 1.03592 0.91785 1.02084 1.67128 1.05378 1.23856 1.20103 1.21120 0.91773 0.98647 0.97641 0.90833 0.91392 0.89991 0.82926 0.76958 0.76852 0.86488 0.86626 0.89462 0.84572 0.85917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.90 10.00 71.24 0.71 -1.19 16 2 C -0.14 -3.70 5.88 -19.88 -0.12 -3.82 16 3 C -0.07 -1.81 9.46 22.33 0.21 -1.60 16 4 C -0.12 -3.74 6.33 22.42 0.14 -3.60 16 5 Cl -0.07 -1.83 27.60 -2.72 -0.08 -1.90 16 6 C 0.23 8.08 6.74 38.64 0.26 8.34 16 7 N -0.86 -28.99 8.77 -50.77 -0.45 -29.44 16 8 C -0.09 -3.33 5.62 -19.92 -0.11 -3.44 16 9 C 0.01 0.46 5.75 41.89 0.24 0.70 16 10 C -0.13 -5.81 9.40 22.30 0.21 -5.60 16 11 C -0.16 -7.94 8.74 22.64 0.20 -7.74 16 12 C 0.04 2.25 5.59 -21.17 -0.12 2.13 16 13 C -0.47 -23.64 9.06 23.37 0.21 -23.43 16 14 H 0.09 4.22 7.90 -2.91 -0.02 4.19 16 15 C 0.04 1.68 5.18 85.27 0.44 2.12 16 16 N -0.81 -39.52 10.91 21.84 0.24 -39.29 16 17 Si 0.99 35.17 29.59 68.60 2.03 37.21 16 18 H -0.26 -9.06 7.11 99.48 0.71 -8.36 16 19 H -0.27 -9.09 7.11 99.48 0.71 -8.38 16 20 H -0.26 -8.82 7.11 99.48 0.71 -8.12 16 21 C -0.04 -1.88 10.97 85.45 0.94 -0.94 16 22 N -0.46 -21.61 8.61 -182.80 -1.57 -23.18 16 23 C -0.07 -2.42 9.07 22.52 0.20 -2.21 16 24 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.07 1.26 8.08 -2.39 -0.02 1.24 16 26 H 0.08 1.24 8.08 -2.38 -0.02 1.22 16 27 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 28 H 0.40 11.56 7.53 -92.71 -0.70 10.86 16 29 H 0.40 15.01 6.67 -92.71 -0.62 14.39 16 30 H 0.12 4.81 7.98 -2.91 -0.02 4.79 16 31 H 0.12 6.00 6.20 -2.91 -0.02 5.98 16 32 H 0.29 12.85 8.30 -92.71 -0.77 12.09 16 33 H 0.14 6.22 8.06 -2.91 -0.02 6.19 16 34 H 0.12 4.03 7.99 -2.91 -0.02 4.00 16 Total: -1.00 -55.91 307.59 3.44 -52.47 By element: Atomic # 1 Polarization: 44.57 SS G_CDS: -0.16 Total: 44.42 kcal Atomic # 6 Polarization: -43.70 SS G_CDS: 3.42 Total: -40.28 kcal Atomic # 7 Polarization: -90.13 SS G_CDS: -1.78 Total: -91.91 kcal Atomic # 14 Polarization: 35.17 SS G_CDS: 2.03 Total: 37.21 kcal Atomic # 17 Polarization: -1.83 SS G_CDS: -0.08 Total: -1.90 kcal Total: -55.91 3.44 -52.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244556078.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.555 kcal (2) G-P(sol) polarization free energy of solvation -55.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds