Wall clock time and date at job start Tue Mar 31 2020 05:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38461 * 119.84491 * 2 1 4 4 C 1.38181 * 120.31789 * 179.97438 * 3 2 1 5 5 Cl 1.73600 * 119.98559 * 179.97438 * 4 3 2 6 6 C 1.38922 * 120.02445 * 0.02562 * 4 3 2 7 7 N 1.39434 * 120.14336 * 180.02562 * 6 4 3 8 8 C 1.39970 * 119.70652 * 359.97438 * 6 4 3 9 9 C 1.48219 * 120.15805 * 179.97438 * 8 6 4 10 10 C 1.38992 * 119.62161 * 132.84718 * 9 8 6 11 11 C 1.40803 * 118.75759 * 179.97438 * 10 9 8 12 12 C 1.41536 * 120.98557 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00175 * 150.00102 * 12 11 10 14 14 C 1.40036 * 119.99776 * 330.00835 * 12 11 10 15 15 N 1.30733 * 120.00377 * 348.58180 * 14 12 11 16 16 Si 1.86801 * 120.00054 * 168.57937 * 14 12 11 17 17 H 1.48507 * 109.47201 * 60.00016 * 16 14 12 18 18 H 1.48496 * 109.47408 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47200 * 300.00281 * 16 14 12 20 20 C 1.41168 * 118.03510 * 0.02562 * 11 10 9 21 21 C 1.37703 * 119.08848 * 0.02562 * 20 11 10 22 22 N 1.31940 * 121.16621 * 359.73809 * 21 20 11 23 23 C 1.37948 * 119.85603 * 179.97438 * 2 1 3 24 24 H 1.08998 * 109.47345 * 89.99772 * 1 2 3 25 25 H 1.09003 * 109.47331 * 209.99809 * 1 2 3 26 26 H 1.09005 * 109.47685 * 329.99530 * 1 2 3 27 27 H 1.07997 * 119.83958 * 359.70464 * 3 2 1 28 28 H 0.97005 * 119.99743 * 172.89005 * 7 6 4 29 29 H 0.97005 * 120.00210 * 352.88204 * 7 6 4 30 30 H 1.07998 * 120.62071 * 359.97438 * 10 9 8 31 31 H 0.96997 * 120.00641 * 180.02562 * 15 14 12 32 32 H 1.08003 * 120.45447 * 179.97438 * 20 11 10 33 33 H 1.08001 * 119.42049 * 180.02562 * 21 20 11 34 34 H 1.08001 * 120.01182 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.2010 0.0000 4 6 3.5778 1.2124 0.0005 5 17 4.4330 2.7231 -0.0001 6 6 4.2828 0.0154 0.0005 7 7 5.6771 0.0240 0.0016 8 6 3.5873 -1.1993 0.0005 9 6 4.3294 -2.4823 0.0000 10 6 3.9624 -3.4886 0.8858 11 6 4.6795 -4.7003 0.8693 12 6 4.3464 -5.7561 1.7510 13 1 4.5178 -6.7807 1.4556 14 6 3.7945 -5.4723 3.0063 15 7 3.7916 -4.2450 3.4568 16 14 3.0622 -6.8472 4.0372 17 1 4.1087 -7.8604 4.3262 18 1 2.5473 -6.2888 5.3132 19 1 1.9479 -7.4855 3.2914 20 6 5.7412 -4.8304 -0.0519 21 6 6.0327 -3.7779 -0.8906 22 7 5.3353 -2.6586 -0.8495 23 6 2.1937 -1.1964 0.0005 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3635 0.8899 0.5139 27 1 1.6509 2.1333 -0.0048 28 1 6.1672 -0.8067 0.1056 29 1 6.1571 0.8606 -0.1017 30 1 3.1427 -3.3438 1.5738 31 1 3.4097 -4.0484 4.3265 32 1 6.3175 -5.7427 -0.0977 33 1 6.8436 -3.8718 -1.5977 34 1 1.6515 -2.1305 0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244569917.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:34 Heat of formation + Delta-G solvation = 26.451873 kcal Electronic energy + Delta-G solvation = -19696.018218 eV Core-core repulsion = 16618.082412 eV Total energy + Delta-G solvation = -3077.935805 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.48596 -37.99299 -36.16035 -34.73365 -34.04640 -31.71346 -30.64849 -30.29931 -28.32447 -25.97753 -25.45130 -23.19079 -21.78048 -21.16603 -19.91865 -17.52133 -16.82932 -16.48311 -15.66487 -15.15640 -14.48977 -14.38750 -14.09394 -13.79153 -13.68839 -13.49883 -12.78777 -12.66620 -12.64462 -12.35209 -12.01587 -11.58570 -11.40487 -11.27255 -11.14793 -10.97189 -10.92131 -10.65961 -10.33604 -9.99659 -9.91508 -9.47982 -8.60372 -8.09893 -8.03752 -7.60951 -6.88389 -6.82459 -4.67919 1.53453 1.90036 2.47329 2.69208 2.74727 2.99329 3.01374 3.15430 3.81998 4.11994 4.35432 4.58575 5.05295 5.20226 5.49675 5.52522 5.61124 5.67575 5.84633 5.85936 6.07583 6.17566 6.30466 6.41316 6.60320 6.66666 6.80833 6.84349 7.01720 7.06695 7.16705 7.25786 7.34455 7.78069 7.90382 8.00893 8.26782 8.35895 8.63336 8.67590 9.43195 10.05191 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.017598 B = 0.005062 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.708626 B = 5529.908546 C = 6304.565112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.145 4.145 3 C -0.069 4.069 4 C -0.122 4.122 5 Cl -0.090 7.090 6 C 0.253 3.747 7 N -0.855 5.855 8 C -0.071 4.071 9 C 0.142 3.858 10 C -0.179 4.179 11 C 0.129 3.871 12 C -0.460 4.460 13 H 0.081 0.919 14 C 0.077 3.923 15 N -0.790 5.790 16 Si 0.913 3.087 17 H -0.264 1.264 18 H -0.277 1.277 19 H -0.262 1.262 20 C -0.268 4.268 21 C 0.099 3.901 22 N -0.564 5.564 23 C -0.051 4.051 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.124 0.876 28 H 0.410 0.590 29 H 0.391 0.609 30 H 0.127 0.873 31 H 0.284 0.716 32 H 0.102 0.898 33 H 0.122 0.878 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.221 7.514 -2.778 8.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.147 4.147 3 C -0.089 4.089 4 C -0.154 4.154 5 Cl -0.061 7.061 6 C 0.144 3.856 7 N -0.394 5.394 8 C -0.077 4.077 9 C 0.011 3.989 10 C -0.201 4.201 11 C 0.121 3.879 12 C -0.491 4.491 13 H 0.099 0.901 14 C -0.142 4.142 15 N -0.416 5.416 16 Si 0.737 3.263 17 H -0.189 1.189 18 H -0.202 1.202 19 H -0.187 1.187 20 C -0.291 4.291 21 C -0.056 4.056 22 N -0.279 5.279 23 C -0.071 4.071 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.142 0.858 28 H 0.243 0.757 29 H 0.220 0.780 30 H 0.144 0.856 31 H 0.096 0.904 32 H 0.120 0.880 33 H 0.140 0.860 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.982 8.467 -3.145 9.511 hybrid contribution 0.081 -1.190 1.181 1.679 sum -2.902 7.277 -1.964 8.076 Atomic orbital electron populations 1.20602 0.91165 1.02249 1.01613 1.19362 0.95759 0.92045 1.07563 1.20524 0.91042 0.98002 0.99291 1.20116 0.92286 0.84352 1.18602 1.98289 1.77949 1.32195 1.97716 1.17392 0.84850 0.91021 0.92380 1.42605 1.02885 1.12646 1.81227 1.18108 0.92387 0.90112 1.07057 1.19102 0.93976 0.91797 0.93976 1.22184 1.02528 0.94604 1.00808 1.17787 0.88154 0.92345 0.89602 1.19550 1.36437 0.94302 0.98810 0.90054 1.25938 0.93371 0.96621 0.98317 1.69719 1.33115 1.20274 1.18446 0.86279 0.80150 0.81137 0.78705 1.18900 1.20163 1.18693 1.21984 1.02004 1.00349 1.04788 1.21857 0.97095 0.89715 0.96950 1.67395 1.10211 1.25266 1.25039 1.20952 0.92368 0.97691 0.96046 0.91975 0.91771 0.92174 0.85824 0.75695 0.78000 0.85561 0.90450 0.88016 0.86005 0.85581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.20 10.00 36.00 0.36 -0.84 16 2 C -0.14 -2.26 5.88 -104.65 -0.61 -2.87 16 3 C -0.07 -1.06 9.46 -39.52 -0.37 -1.43 16 4 C -0.12 -2.03 6.33 -39.35 -0.25 -2.28 16 5 Cl -0.09 -1.29 27.60 -51.86 -1.43 -2.72 16 6 C 0.25 4.77 6.73 -83.50 -0.56 4.21 16 7 N -0.85 -15.06 8.78 32.57 0.29 -14.78 16 8 C -0.07 -1.46 5.63 -104.73 -0.59 -2.05 16 9 C 0.14 3.28 5.77 -83.05 -0.48 2.80 16 10 C -0.18 -4.44 8.09 -38.33 -0.31 -4.75 16 11 C 0.13 3.28 5.55 -106.56 -0.59 2.69 16 12 C -0.46 -11.57 9.11 -37.65 -0.34 -11.91 16 13 H 0.08 1.95 7.87 -52.49 -0.41 1.54 16 14 C 0.08 1.83 5.26 -17.35 -0.09 1.74 16 15 N -0.79 -19.60 11.03 55.55 0.61 -18.98 16 16 Si 0.91 17.83 29.57 -169.99 -5.03 12.80 16 17 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 18 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 19 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 20 C -0.27 -6.23 9.90 -38.67 -0.38 -6.61 16 21 C 0.10 2.15 11.15 -17.70 -0.20 1.96 16 22 N -0.56 -12.73 8.55 -9.96 -0.09 -12.81 16 23 C -0.05 -0.93 9.06 -39.27 -0.36 -1.29 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 26 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 27 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 28 H 0.41 7.83 6.63 -40.82 -0.27 7.56 16 29 H 0.39 5.94 7.53 -40.82 -0.31 5.63 16 30 H 0.13 3.24 6.38 -52.49 -0.33 2.90 16 31 H 0.28 6.48 8.29 -40.82 -0.34 6.14 16 32 H 0.10 2.18 8.06 -52.48 -0.42 1.76 16 33 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 34 H 0.13 2.24 7.97 -52.49 -0.42 1.83 16 LS Contribution 307.93 15.07 4.64 4.64 Total: -1.00 -26.42 307.93 -9.19 -35.61 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -3.41 Total: 16.87 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -4.78 Total: -20.63 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: 0.81 Total: -46.57 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.80 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -1.43 Total: -2.72 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -26.42 -9.19 -35.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244569917.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.062 kcal (2) G-P(sol) polarization free energy of solvation -26.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds