Wall clock time and date at job start Tue Mar 31 2020 05:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38461 * 119.84491 * 2 1 4 4 C 1.38181 * 120.31789 * 179.97438 * 3 2 1 5 5 Cl 1.73600 * 119.98559 * 179.97438 * 4 3 2 6 6 C 1.38922 * 120.02445 * 0.02562 * 4 3 2 7 7 N 1.39434 * 120.14336 * 180.02562 * 6 4 3 8 8 C 1.39970 * 119.70652 * 359.97438 * 6 4 3 9 9 C 1.48219 * 120.15805 * 179.97438 * 8 6 4 10 10 C 1.38992 * 119.62161 * 132.84718 * 9 8 6 11 11 C 1.40803 * 118.75759 * 179.97438 * 10 9 8 12 12 C 1.41536 * 120.98557 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00175 * 150.00102 * 12 11 10 14 14 C 1.40036 * 119.99776 * 330.00835 * 12 11 10 15 15 N 1.30733 * 120.00377 * 348.58180 * 14 12 11 16 16 Si 1.86801 * 120.00054 * 168.57937 * 14 12 11 17 17 H 1.48507 * 109.47201 * 60.00016 * 16 14 12 18 18 H 1.48496 * 109.47408 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47200 * 300.00281 * 16 14 12 20 20 C 1.41168 * 118.03510 * 0.02562 * 11 10 9 21 21 C 1.37703 * 119.08848 * 0.02562 * 20 11 10 22 22 N 1.31940 * 121.16621 * 359.73809 * 21 20 11 23 23 C 1.37948 * 119.85603 * 179.97438 * 2 1 3 24 24 H 1.08998 * 109.47345 * 89.99772 * 1 2 3 25 25 H 1.09003 * 109.47331 * 209.99809 * 1 2 3 26 26 H 1.09005 * 109.47685 * 329.99530 * 1 2 3 27 27 H 1.07997 * 119.83958 * 359.70464 * 3 2 1 28 28 H 0.97005 * 119.99743 * 172.89005 * 7 6 4 29 29 H 0.97005 * 120.00210 * 352.88204 * 7 6 4 30 30 H 1.07998 * 120.62071 * 359.97438 * 10 9 8 31 31 H 0.96997 * 120.00641 * 180.02562 * 15 14 12 32 32 H 1.08003 * 120.45447 * 179.97438 * 20 11 10 33 33 H 1.08001 * 119.42049 * 180.02562 * 21 20 11 34 34 H 1.08001 * 120.01182 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.2010 0.0000 4 6 3.5778 1.2124 0.0005 5 17 4.4330 2.7231 -0.0001 6 6 4.2828 0.0154 0.0005 7 7 5.6771 0.0240 0.0016 8 6 3.5873 -1.1993 0.0005 9 6 4.3294 -2.4823 0.0000 10 6 3.9624 -3.4886 0.8858 11 6 4.6795 -4.7003 0.8693 12 6 4.3464 -5.7561 1.7510 13 1 4.5178 -6.7807 1.4556 14 6 3.7945 -5.4723 3.0063 15 7 3.7916 -4.2450 3.4568 16 14 3.0622 -6.8472 4.0372 17 1 4.1087 -7.8604 4.3262 18 1 2.5473 -6.2888 5.3132 19 1 1.9479 -7.4855 3.2914 20 6 5.7412 -4.8304 -0.0519 21 6 6.0327 -3.7779 -0.8906 22 7 5.3353 -2.6586 -0.8495 23 6 2.1937 -1.1964 0.0005 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3635 0.8899 0.5139 27 1 1.6509 2.1333 -0.0048 28 1 6.1672 -0.8067 0.1056 29 1 6.1571 0.8606 -0.1017 30 1 3.1427 -3.3438 1.5738 31 1 3.4097 -4.0484 4.3265 32 1 6.3175 -5.7427 -0.0977 33 1 6.8436 -3.8718 -1.5977 34 1 1.6515 -2.1305 0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244569917.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:34 Heat of formation + Delta-G solvation = 13.213675 kcal Electronic energy + Delta-G solvation = -19696.592269 eV Core-core repulsion = 16618.082412 eV Total energy + Delta-G solvation = -3078.509856 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.96943 -39.62174 -37.39444 -36.20228 -35.71966 -33.27211 -32.44831 -31.51821 -29.91454 -27.82820 -26.66303 -24.72090 -23.51765 -22.65213 -21.46400 -19.25038 -18.21497 -17.88160 -17.38750 -16.62604 -16.21444 -16.09307 -15.57754 -15.22599 -14.96612 -14.79621 -14.39422 -14.25551 -14.09594 -13.75018 -13.23003 -13.06274 -12.93372 -12.77194 -12.58793 -12.43868 -12.31597 -11.97607 -11.94260 -11.66467 -11.25545 -11.19816 -10.14984 -9.88781 -9.85536 -9.20247 -8.67259 -8.23785 -6.58270 0.09481 0.53878 0.96734 0.98464 1.23223 1.38463 1.50149 1.54470 2.18156 2.66798 2.84383 3.00079 3.55624 3.68102 4.00840 4.15271 4.33143 4.38825 4.53301 4.61119 4.86320 4.94055 4.96528 5.00160 5.01794 5.09508 5.20887 5.23818 5.38760 5.45539 5.52163 5.69774 5.88177 5.94633 6.19118 6.48696 6.50541 6.77402 6.81003 6.91633 7.63900 8.27692 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.017598 B = 0.005062 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.708626 B = 5529.908546 C = 6304.565112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.139 4.139 3 C -0.060 4.060 4 C -0.125 4.125 5 Cl -0.067 7.067 6 C 0.237 3.763 7 N -0.854 5.854 8 C -0.109 4.109 9 C 0.148 3.852 10 C -0.203 4.203 11 C 0.101 3.899 12 C -0.493 4.493 13 H 0.083 0.917 14 C 0.038 3.962 15 N -0.821 5.821 16 Si 0.985 3.015 17 H -0.259 1.259 18 H -0.268 1.268 19 H -0.258 1.258 20 C -0.283 4.283 21 C 0.099 3.901 22 N -0.565 5.565 23 C -0.063 4.063 24 H 0.078 0.922 25 H 0.063 0.937 26 H 0.083 0.917 27 H 0.158 0.842 28 H 0.402 0.598 29 H 0.401 0.599 30 H 0.109 0.891 31 H 0.290 0.710 32 H 0.114 0.886 33 H 0.158 0.842 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.218 8.750 -2.866 10.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.141 4.141 3 C -0.080 4.080 4 C -0.157 4.157 5 Cl -0.039 7.039 6 C 0.128 3.872 7 N -0.393 5.393 8 C -0.115 4.115 9 C 0.017 3.983 10 C -0.226 4.226 11 C 0.093 3.907 12 C -0.524 4.524 13 H 0.101 0.899 14 C -0.178 4.178 15 N -0.447 5.447 16 Si 0.806 3.194 17 H -0.183 1.183 18 H -0.193 1.193 19 H -0.182 1.182 20 C -0.306 4.306 21 C -0.055 4.055 22 N -0.281 5.281 23 C -0.083 4.083 24 H 0.096 0.904 25 H 0.082 0.918 26 H 0.102 0.898 27 H 0.175 0.825 28 H 0.233 0.767 29 H 0.232 0.768 30 H 0.127 0.873 31 H 0.101 0.899 32 H 0.132 0.868 33 H 0.175 0.825 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.970 9.725 -3.251 10.996 hybrid contribution 0.407 -1.422 1.130 1.861 sum -3.564 8.303 -2.121 9.281 Atomic orbital electron populations 1.20682 0.88346 1.03445 1.03010 1.19745 0.97715 0.91046 1.05608 1.20953 0.90627 0.99197 0.97173 1.20283 0.93023 0.84685 1.17686 1.98296 1.77648 1.30324 1.97591 1.17515 0.85244 0.91362 0.93128 1.42538 1.02668 1.12700 1.81425 1.18182 0.93350 0.89700 1.10271 1.19452 0.93589 0.92482 0.92778 1.22089 1.02999 0.95630 1.01846 1.18190 0.89034 0.92935 0.90521 1.19836 1.38225 0.94403 0.99898 0.89887 1.26788 0.93025 0.99011 0.99001 1.69798 1.33684 1.22196 1.19058 0.85196 0.79297 0.77897 0.77045 1.18287 1.19269 1.18239 1.22198 1.01961 1.01475 1.04967 1.22411 0.97403 0.88916 0.96804 1.67545 1.10211 1.25469 1.24844 1.21059 0.91803 0.98771 0.96644 0.90360 0.91803 0.89816 0.82452 0.76718 0.76819 0.87293 0.89938 0.86775 0.82455 0.86334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.09 10.00 71.23 0.71 -1.37 16 2 C -0.14 -4.08 5.88 -19.88 -0.12 -4.19 16 3 C -0.06 -1.68 9.46 22.31 0.21 -1.47 16 4 C -0.13 -3.95 6.33 22.42 0.14 -3.81 16 5 Cl -0.07 -1.77 27.60 -2.72 -0.08 -1.84 16 6 C 0.24 8.88 6.73 38.52 0.26 9.13 16 7 N -0.85 -30.03 8.78 -50.86 -0.45 -30.48 16 8 C -0.11 -4.57 5.63 -19.93 -0.11 -4.68 16 9 C 0.15 7.06 5.77 41.83 0.24 7.30 16 10 C -0.20 -10.58 8.09 23.08 0.19 -10.40 16 11 C 0.10 5.34 5.55 -21.12 -0.12 5.23 16 12 C -0.49 -25.65 9.11 23.52 0.21 -25.43 16 13 H 0.08 4.12 7.87 -2.91 -0.02 4.09 16 14 C 0.04 1.85 5.26 85.29 0.45 2.30 16 15 N -0.82 -42.06 11.03 21.84 0.24 -41.82 16 16 Si 0.99 36.82 29.57 68.60 2.03 38.85 16 17 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 18 H -0.27 -9.55 7.11 99.48 0.71 -8.84 16 19 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 20 C -0.28 -13.45 9.90 22.86 0.23 -13.22 16 21 C 0.10 4.33 11.15 84.55 0.94 5.27 16 22 N -0.57 -25.85 8.55 -185.42 -1.59 -27.44 16 23 C -0.06 -2.33 9.06 22.47 0.20 -2.13 16 24 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.06 1.37 8.08 -2.39 -0.02 1.35 16 26 H 0.08 1.41 8.08 -2.38 -0.02 1.39 16 27 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 28 H 0.40 15.55 6.63 -92.70 -0.61 14.93 16 29 H 0.40 11.92 7.53 -92.70 -0.70 11.22 16 30 H 0.11 5.94 6.38 -2.91 -0.02 5.92 16 31 H 0.29 13.53 8.29 -92.71 -0.77 12.76 16 32 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 33 H 0.16 5.59 8.06 -2.91 -0.02 5.57 16 34 H 0.12 4.41 7.97 -2.91 -0.02 4.39 16 Total: -1.00 -58.54 307.93 3.45 -55.09 By element: Atomic # 1 Polarization: 45.27 SS G_CDS: -0.15 Total: 45.12 kcal Atomic # 6 Polarization: -40.92 SS G_CDS: 3.44 Total: -37.48 kcal Atomic # 7 Polarization: -97.94 SS G_CDS: -1.79 Total: -99.73 kcal Atomic # 14 Polarization: 36.82 SS G_CDS: 2.03 Total: 38.85 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -0.08 Total: -1.84 kcal Total: -58.54 3.45 -55.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244569917.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.303 kcal (2) G-P(sol) polarization free energy of solvation -58.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds