Wall clock time and date at job start Tue Mar 31 2020 05:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38433 * 119.85814 * 2 1 4 4 C 1.38201 * 120.31155 * 180.02562 * 3 2 1 5 5 Cl 1.73596 * 119.98852 * 179.97438 * 4 3 2 6 6 C 1.38895 * 120.02356 * 359.95509 * 4 3 2 7 7 N 1.39535 * 120.13925 * 180.02562 * 6 4 3 8 8 C 1.39914 * 119.71138 * 0.02562 * 6 4 3 9 9 C 1.48333 * 120.14924 * 180.02562 * 8 6 4 10 10 C 1.39759 * 120.41138 * 309.97801 * 9 8 6 11 11 N 1.31904 * 121.14069 * 180.02562 * 10 9 8 12 12 C 1.31534 * 122.12219 * 0.02562 * 11 10 9 13 13 C 1.40773 * 120.67486 * 0.02562 * 12 11 10 14 14 C 1.41440 * 120.59669 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00364 * 335.75077 * 14 13 12 16 16 C 1.39939 * 119.99856 * 155.75499 * 14 13 12 17 17 N 1.30838 * 119.99637 * 343.18115 * 16 14 13 18 18 Si 1.86801 * 120.00098 * 163.17612 * 16 14 13 19 19 H 1.48497 * 109.46856 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46642 * 119.99862 * 18 16 14 21 21 H 1.48497 * 109.47076 * 239.99894 * 18 16 14 22 22 C 1.39171 * 120.41423 * 129.70751 * 9 8 6 23 23 C 1.37996 * 119.86142 * 179.97438 * 2 1 3 24 24 H 1.08996 * 109.47533 * 270.00769 * 1 2 3 25 25 H 1.09005 * 109.47264 * 30.00855 * 1 2 3 26 26 H 1.08999 * 109.47224 * 149.99925 * 1 2 3 27 27 H 1.08002 * 119.84205 * 0.02562 * 3 2 1 28 28 H 0.97003 * 119.99724 * 179.97438 * 7 6 4 29 29 H 0.97002 * 120.00192 * 359.97438 * 7 6 4 30 30 H 1.07998 * 119.43127 * 359.97438 * 10 9 8 31 31 H 1.07996 * 119.65750 * 180.02562 * 12 11 10 32 32 H 0.97001 * 119.99632 * 180.02562 * 17 16 14 33 33 H 1.08001 * 120.95234 * 359.97438 * 22 9 8 34 34 H 1.08007 * 120.00838 * 0.26165 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1961 1.2006 0.0000 4 6 3.5781 1.2115 -0.0005 5 17 4.4339 2.7219 -0.0012 6 6 4.2826 0.0145 -0.0001 7 7 5.6779 0.0227 -0.0001 8 6 3.5870 -1.1995 0.0003 9 6 4.3295 -2.4836 0.0013 10 6 5.3544 -2.7089 -0.9218 11 7 6.0237 -3.8455 -0.9341 12 6 5.7653 -4.8185 -0.0876 13 6 4.7491 -4.6804 0.8768 14 6 4.4730 -5.7276 1.7867 15 1 4.7297 -6.7454 1.5327 16 6 3.8670 -5.4447 3.0159 17 7 3.8525 -4.2182 3.4712 18 14 3.0787 -6.8183 4.0066 19 1 3.2293 -8.1034 3.2780 20 1 3.7448 -6.9191 5.3300 21 1 1.6360 -6.5242 4.1997 22 6 4.0181 -3.4768 0.9250 23 6 2.1940 -1.1967 0.0005 24 1 -0.3634 0.0001 1.0276 25 1 -0.3634 0.8899 -0.5140 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6512 2.1331 0.0004 28 1 6.1678 -0.8145 0.0005 29 1 6.1580 0.8656 -0.0008 30 1 5.6022 -1.9394 -1.6380 31 1 6.3386 -5.7326 -0.1329 32 1 3.4328 -4.0223 4.3235 33 1 3.2347 -3.3314 1.6542 34 1 1.6519 -2.1309 -0.0033 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244577270.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:36 Heat of formation + Delta-G solvation = 24.828020 kcal Electronic energy + Delta-G solvation = -19700.614798 eV Core-core repulsion = 16622.608577 eV Total energy + Delta-G solvation = -3078.006221 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.58777 -38.03008 -36.23926 -34.87521 -34.10453 -32.11657 -30.47293 -30.33056 -28.49842 -25.71757 -25.52822 -23.21074 -21.78829 -21.22208 -19.94636 -17.48261 -16.93715 -16.56832 -15.72975 -15.31780 -15.11194 -14.46547 -14.13929 -13.72919 -13.65996 -13.59250 -12.90050 -12.74734 -12.35998 -12.10901 -11.84254 -11.66318 -11.53692 -11.30867 -11.28114 -11.19884 -10.96195 -10.72502 -10.62758 -10.09006 -9.88405 -9.48127 -8.77466 -8.26037 -7.97780 -7.67844 -6.94612 -6.92280 -4.59335 1.47745 1.80201 2.39396 2.54840 2.83629 2.97948 3.02812 3.09667 3.78593 4.06155 4.21171 4.49904 5.04915 5.19813 5.43195 5.52748 5.58230 5.66580 5.81023 5.87595 5.97297 6.10750 6.23055 6.34880 6.48197 6.55959 6.67296 6.83083 6.95619 7.02348 7.07269 7.17059 7.57386 7.73839 7.78174 7.83514 8.10792 8.32246 8.57622 8.60410 9.51896 9.96498 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.017431 B = 0.005079 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.990483 B = 5512.000399 C = 6286.502455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.140 4.140 3 C -0.074 4.074 4 C -0.116 4.116 5 Cl -0.088 7.088 6 C 0.237 3.763 7 N -0.866 5.866 8 C -0.074 4.074 9 C -0.082 4.082 10 C -0.040 4.040 11 N -0.465 5.465 12 C -0.021 4.021 13 C 0.064 3.936 14 C -0.447 4.447 15 H 0.085 0.915 16 C 0.074 3.926 17 N -0.785 5.785 18 Si 0.912 3.088 19 H -0.258 1.258 20 H -0.273 1.273 21 H -0.270 1.270 22 C -0.115 4.115 23 C -0.056 4.056 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.124 0.876 28 H 0.409 0.591 29 H 0.394 0.606 30 H 0.121 0.879 31 H 0.126 0.874 32 H 0.284 0.716 33 H 0.131 0.869 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.541 8.491 -2.351 9.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.142 4.142 3 C -0.093 4.093 4 C -0.148 4.148 5 Cl -0.060 7.060 6 C 0.129 3.871 7 N -0.407 5.407 8 C -0.080 4.080 9 C -0.084 4.084 10 C -0.197 4.197 11 N -0.172 5.172 12 C -0.182 4.182 13 C 0.060 3.940 14 C -0.477 4.477 15 H 0.103 0.897 16 C -0.145 4.145 17 N -0.410 5.410 18 Si 0.735 3.265 19 H -0.182 1.182 20 H -0.198 1.198 21 H -0.195 1.195 22 C -0.141 4.141 23 C -0.075 4.075 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.142 0.858 28 H 0.242 0.758 29 H 0.222 0.778 30 H 0.138 0.862 31 H 0.144 0.856 32 H 0.095 0.905 33 H 0.149 0.851 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.872 8.652 -2.757 9.871 hybrid contribution -0.523 -0.207 1.295 1.412 sum -4.395 8.445 -1.462 9.632 Atomic orbital electron populations 1.20617 0.91170 1.02148 1.01818 1.19426 0.95800 0.92136 1.06860 1.20524 0.91044 0.98041 0.99687 1.20100 0.92291 0.84379 1.17981 1.98296 1.77853 1.32159 1.97682 1.17422 0.84724 0.91272 0.93680 1.42819 1.02962 1.11700 1.83197 1.18340 0.92735 0.90760 1.06155 1.19270 0.98061 0.92760 0.98330 1.21747 0.99487 0.96280 1.02199 1.66940 1.26523 1.00756 1.23002 1.22535 0.99597 0.97873 0.98227 1.18486 0.90084 0.93095 0.92369 1.19618 1.33640 0.95197 0.99242 0.89724 1.25992 0.93872 0.96669 0.98001 1.69796 1.32134 1.20569 1.18453 0.86192 0.79384 0.81548 0.79325 1.18170 1.19805 1.19515 1.21803 1.00724 0.93359 0.98225 1.21002 0.92569 0.97587 0.96359 0.91799 0.92168 0.91814 0.85790 0.75766 0.77752 0.86200 0.85602 0.90482 0.85125 0.85626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.17 10.00 36.00 0.36 -0.81 16 2 C -0.14 -2.10 5.88 -104.64 -0.61 -2.71 16 3 C -0.07 -1.08 9.46 -39.52 -0.37 -1.46 16 4 C -0.12 -1.84 6.33 -39.35 -0.25 -2.09 16 5 Cl -0.09 -1.21 27.59 -51.86 -1.43 -2.64 16 6 C 0.24 4.19 6.68 -83.48 -0.56 3.63 16 7 N -0.87 -14.11 8.58 32.58 0.28 -13.83 16 8 C -0.07 -1.44 5.50 -104.72 -0.58 -2.02 16 9 C -0.08 -1.81 5.07 -104.83 -0.53 -2.34 16 10 C -0.04 -0.87 8.89 -16.95 -0.15 -1.03 16 11 N -0.47 -11.03 10.32 -12.27 -0.13 -11.15 16 12 C -0.02 -0.50 10.96 -16.72 -0.18 -0.69 16 13 C 0.06 1.62 5.59 -106.71 -0.60 1.02 16 14 C -0.45 -11.07 9.09 -37.73 -0.34 -11.41 16 15 H 0.08 2.00 7.90 -52.49 -0.41 1.58 16 16 C 0.07 1.73 5.19 -17.34 -0.09 1.64 16 17 N -0.79 -19.11 10.90 55.55 0.61 -18.50 16 18 Si 0.91 17.51 29.59 -169.99 -5.03 12.48 16 19 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 20 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 21 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 22 C -0.12 -2.82 8.30 -38.23 -0.32 -3.14 16 23 C -0.06 -0.99 9.17 -39.28 -0.36 -1.35 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 26 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 27 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 28 H 0.41 7.17 5.98 -40.82 -0.24 6.92 16 29 H 0.39 5.53 7.50 -40.82 -0.31 5.23 16 30 H 0.12 2.44 7.48 -52.49 -0.39 2.04 16 31 H 0.13 2.83 8.06 -52.49 -0.42 2.41 16 32 H 0.28 6.30 8.30 -40.82 -0.34 5.97 16 33 H 0.13 3.29 6.19 -52.49 -0.32 2.97 16 34 H 0.13 2.16 8.05 -52.48 -0.42 1.74 16 LS Contribution 306.23 15.07 4.61 4.61 Total: -1.00 -26.08 306.23 -9.02 -35.10 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -3.35 Total: 16.68 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: -4.58 Total: -22.74 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: 0.76 Total: -43.49 kcal Atomic # 14 Polarization: 17.51 SS G_CDS: -5.03 Total: 12.48 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -1.43 Total: -2.64 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -26.08 -9.02 -35.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244577270.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.928 kcal (2) G-P(sol) polarization free energy of solvation -26.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds