Wall clock time and date at job start Tue Mar 31 2020 05:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38433 * 119.85814 * 2 1 4 4 C 1.38201 * 120.31155 * 180.02562 * 3 2 1 5 5 Cl 1.73596 * 119.98852 * 179.97438 * 4 3 2 6 6 C 1.38895 * 120.02356 * 359.95509 * 4 3 2 7 7 N 1.39535 * 120.13925 * 180.02562 * 6 4 3 8 8 C 1.39914 * 119.71138 * 0.02562 * 6 4 3 9 9 C 1.48333 * 120.14924 * 180.02562 * 8 6 4 10 10 C 1.39759 * 120.41138 * 309.97801 * 9 8 6 11 11 N 1.31904 * 121.14069 * 180.02562 * 10 9 8 12 12 C 1.31534 * 122.12219 * 0.02562 * 11 10 9 13 13 C 1.40773 * 120.67486 * 0.02562 * 12 11 10 14 14 C 1.41440 * 120.59669 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00364 * 335.75077 * 14 13 12 16 16 C 1.39939 * 119.99856 * 155.75499 * 14 13 12 17 17 N 1.30838 * 119.99637 * 343.18115 * 16 14 13 18 18 Si 1.86801 * 120.00098 * 163.17612 * 16 14 13 19 19 H 1.48497 * 109.46856 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46642 * 119.99862 * 18 16 14 21 21 H 1.48497 * 109.47076 * 239.99894 * 18 16 14 22 22 C 1.39171 * 120.41423 * 129.70751 * 9 8 6 23 23 C 1.37996 * 119.86142 * 179.97438 * 2 1 3 24 24 H 1.08996 * 109.47533 * 270.00769 * 1 2 3 25 25 H 1.09005 * 109.47264 * 30.00855 * 1 2 3 26 26 H 1.08999 * 109.47224 * 149.99925 * 1 2 3 27 27 H 1.08002 * 119.84205 * 0.02562 * 3 2 1 28 28 H 0.97003 * 119.99724 * 179.97438 * 7 6 4 29 29 H 0.97002 * 120.00192 * 359.97438 * 7 6 4 30 30 H 1.07998 * 119.43127 * 359.97438 * 10 9 8 31 31 H 1.07996 * 119.65750 * 180.02562 * 12 11 10 32 32 H 0.97001 * 119.99632 * 180.02562 * 17 16 14 33 33 H 1.08001 * 120.95234 * 359.97438 * 22 9 8 34 34 H 1.08007 * 120.00838 * 0.26165 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1961 1.2006 0.0000 4 6 3.5781 1.2115 -0.0005 5 17 4.4339 2.7219 -0.0012 6 6 4.2826 0.0145 -0.0001 7 7 5.6779 0.0227 -0.0001 8 6 3.5870 -1.1995 0.0003 9 6 4.3295 -2.4836 0.0013 10 6 5.3544 -2.7089 -0.9218 11 7 6.0237 -3.8455 -0.9341 12 6 5.7653 -4.8185 -0.0876 13 6 4.7491 -4.6804 0.8768 14 6 4.4730 -5.7276 1.7867 15 1 4.7297 -6.7454 1.5327 16 6 3.8670 -5.4447 3.0159 17 7 3.8525 -4.2182 3.4712 18 14 3.0787 -6.8183 4.0066 19 1 3.2293 -8.1034 3.2780 20 1 3.7448 -6.9191 5.3300 21 1 1.6360 -6.5242 4.1997 22 6 4.0181 -3.4768 0.9250 23 6 2.1940 -1.1967 0.0005 24 1 -0.3634 0.0001 1.0276 25 1 -0.3634 0.8899 -0.5140 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6512 2.1331 0.0004 28 1 6.1678 -0.8145 0.0005 29 1 6.1580 0.8656 -0.0008 30 1 5.6022 -1.9394 -1.6380 31 1 6.3386 -5.7326 -0.1329 32 1 3.4328 -4.0223 4.3235 33 1 3.2347 -3.3314 1.6542 34 1 1.6519 -2.1309 -0.0033 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244577270.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:35 Heat of formation + Delta-G solvation = 11.756435 kcal Electronic energy + Delta-G solvation = -19701.181624 eV Core-core repulsion = 16622.608577 eV Total energy + Delta-G solvation = -3078.573047 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.02897 -39.67968 -37.41878 -36.24246 -35.82267 -33.66645 -32.22566 -31.56148 -30.02471 -27.54978 -26.69151 -24.74374 -23.53688 -22.66236 -21.44139 -19.20512 -18.26503 -17.95266 -17.45622 -17.05675 -16.48677 -16.17182 -15.44931 -15.13947 -14.93924 -14.82592 -14.45888 -14.15548 -13.79060 -13.60181 -13.34061 -13.20591 -13.05509 -12.77799 -12.72064 -12.50347 -12.39050 -12.14853 -11.90537 -11.60944 -11.26572 -11.21896 -10.33519 -10.10633 -9.73127 -9.25456 -8.71558 -8.27868 -6.47924 0.08191 0.49973 0.83889 1.04388 1.22921 1.39567 1.49635 1.54974 2.17644 2.63647 2.78233 2.94094 3.65296 3.73174 4.04444 4.10147 4.21265 4.37678 4.51520 4.56115 4.72451 4.80007 4.94147 4.96248 5.02987 5.06289 5.16128 5.22481 5.31999 5.39955 5.67678 5.77670 5.86505 5.91955 6.00900 6.41135 6.48129 6.73570 6.74556 6.83970 7.66237 8.21624 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.017431 B = 0.005079 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.990483 B = 5512.000399 C = 6286.502455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.135 4.135 3 C -0.065 4.065 4 C -0.120 4.120 5 Cl -0.067 7.067 6 C 0.226 3.774 7 N -0.864 5.864 8 C -0.109 4.109 9 C -0.068 4.068 10 C -0.040 4.040 11 N -0.473 5.473 12 C -0.041 4.041 13 C 0.042 3.958 14 C -0.477 4.477 15 H 0.087 0.913 16 C 0.037 3.963 17 N -0.815 5.815 18 Si 0.985 3.015 19 H -0.255 1.255 20 H -0.266 1.266 21 H -0.263 1.263 22 C -0.136 4.136 23 C -0.067 4.067 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.066 0.934 27 H 0.156 0.844 28 H 0.402 0.598 29 H 0.403 0.597 30 H 0.139 0.861 31 H 0.135 0.865 32 H 0.292 0.708 33 H 0.117 0.883 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.994 9.969 -2.113 11.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.138 4.138 3 C -0.083 4.083 4 C -0.152 4.152 5 Cl -0.038 7.038 6 C 0.118 3.882 7 N -0.405 5.405 8 C -0.115 4.115 9 C -0.071 4.071 10 C -0.198 4.198 11 N -0.180 5.180 12 C -0.202 4.202 13 C 0.037 3.963 14 C -0.507 4.507 15 H 0.105 0.895 16 C -0.179 4.179 17 N -0.439 5.439 18 Si 0.805 3.195 19 H -0.178 1.178 20 H -0.191 1.191 21 H -0.188 1.188 22 C -0.162 4.162 23 C -0.086 4.086 24 H 0.091 0.909 25 H 0.103 0.897 26 H 0.085 0.915 27 H 0.174 0.826 28 H 0.234 0.766 29 H 0.234 0.766 30 H 0.156 0.844 31 H 0.152 0.848 32 H 0.102 0.898 33 H 0.135 0.865 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.312 10.153 -2.533 11.735 hybrid contribution -0.076 -0.479 1.167 1.263 sum -5.389 9.674 -1.366 11.157 Atomic orbital electron populations 1.20694 0.88516 1.03609 1.02821 1.19777 0.97659 0.91187 1.05153 1.20939 0.90698 0.99169 0.97540 1.20258 0.92974 0.84736 1.17182 1.98304 1.77553 1.30408 1.97563 1.17500 0.85120 0.91458 0.94148 1.42758 1.02682 1.11843 1.83201 1.18303 0.93568 0.90138 1.09497 1.19453 0.97411 0.93456 0.96754 1.22068 0.99241 0.96138 1.02329 1.66946 1.26903 1.01172 1.23023 1.22691 1.00136 0.98611 0.98771 1.18795 0.90615 0.93849 0.93016 1.19884 1.35270 0.95258 1.00241 0.89512 1.26824 0.93573 0.99041 0.98509 1.69850 1.32508 1.22428 1.19142 0.85100 0.78436 0.78287 0.77638 1.17830 1.19121 1.18772 1.21754 1.01146 0.94261 0.99078 1.21093 0.92056 0.98617 0.96851 0.90902 0.89681 0.91480 0.82616 0.76621 0.76576 0.84371 0.84758 0.89752 0.86478 0.86357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.02 10.00 71.23 0.71 -1.31 16 2 C -0.14 -3.77 5.88 -19.88 -0.12 -3.89 16 3 C -0.06 -1.70 9.46 22.31 0.21 -1.49 16 4 C -0.12 -3.55 6.33 22.42 0.14 -3.41 16 5 Cl -0.07 -1.66 27.59 -2.72 -0.08 -1.73 16 6 C 0.23 7.81 6.68 38.48 0.26 8.07 16 7 N -0.86 -27.73 8.58 -50.85 -0.44 -28.17 16 8 C -0.11 -4.27 5.50 -19.93 -0.11 -4.38 16 9 C -0.07 -3.10 5.07 -20.00 -0.10 -3.20 16 10 C -0.04 -1.80 8.89 85.05 0.76 -1.04 16 11 N -0.47 -22.93 10.32 -192.73 -1.99 -24.92 16 12 C -0.04 -2.07 10.96 85.36 0.94 -1.13 16 13 C 0.04 2.18 5.59 -21.22 -0.12 2.06 16 14 C -0.48 -24.37 9.09 23.47 0.21 -24.16 16 15 H 0.09 4.22 7.90 -2.91 -0.02 4.20 16 16 C 0.04 1.77 5.19 85.25 0.44 2.21 16 17 N -0.81 -40.48 10.90 21.83 0.24 -40.24 16 18 Si 0.99 35.90 29.59 68.60 2.03 37.93 16 19 H -0.25 -9.07 7.11 99.48 0.71 -8.36 16 20 H -0.27 -9.38 7.11 99.48 0.71 -8.67 16 21 H -0.26 -9.22 7.11 99.48 0.71 -8.52 16 22 C -0.14 -6.93 8.30 23.15 0.19 -6.74 16 23 C -0.07 -2.35 9.17 22.47 0.21 -2.14 16 24 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.08 1.32 8.08 -2.38 -0.02 1.30 16 26 H 0.07 1.32 8.08 -2.39 -0.02 1.30 16 27 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 28 H 0.40 14.16 5.98 -92.71 -0.55 13.61 16 29 H 0.40 10.93 7.50 -92.71 -0.70 10.24 16 30 H 0.14 5.62 7.48 -2.91 -0.02 5.59 16 31 H 0.13 6.28 8.06 -2.91 -0.02 6.26 16 32 H 0.29 13.08 8.30 -92.71 -0.77 12.31 16 33 H 0.12 6.19 6.19 -2.91 -0.02 6.17 16 34 H 0.12 4.18 8.05 -2.91 -0.02 4.16 16 Total: -1.00 -56.94 306.23 3.30 -53.64 By element: Atomic # 1 Polarization: 44.12 SS G_CDS: -0.09 Total: 44.04 kcal Atomic # 6 Polarization: -44.17 SS G_CDS: 3.62 Total: -40.55 kcal Atomic # 7 Polarization: -91.13 SS G_CDS: -2.19 Total: -93.32 kcal Atomic # 14 Polarization: 35.90 SS G_CDS: 2.03 Total: 37.93 kcal Atomic # 17 Polarization: -1.66 SS G_CDS: -0.08 Total: -1.73 kcal Total: -56.94 3.30 -53.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244577270.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.401 kcal (2) G-P(sol) polarization free energy of solvation -56.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds