Wall clock time and date at job start Tue Mar 31 2020 05:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38589 * 119.83319 * 2 1 4 4 C 1.38179 * 120.39117 * 179.97438 * 3 2 1 5 5 Cl 1.73598 * 119.97526 * 179.97438 * 4 3 2 6 6 C 1.38905 * 120.04165 * 0.02562 * 4 3 2 7 7 N 1.39264 * 120.16604 * 179.97438 * 6 4 3 8 8 C 1.40337 * 119.66464 * 359.97438 * 6 4 3 9 9 C 1.47760 * 120.18741 * 180.02562 * 8 6 4 10 10 C 1.40380 * 120.35008 * 129.70430 * 9 8 6 11 11 C 1.36610 * 118.59831 * 179.79420 * 10 9 8 12 12 C 1.40918 * 119.26586 * 0.43104 * 11 10 9 13 13 C 1.40905 * 119.67141 * 179.78365 * 12 11 10 14 14 H 1.07997 * 120.00215 * 353.67965 * 13 12 11 15 15 C 1.40068 * 120.00093 * 173.67439 * 13 12 11 16 16 N 1.30740 * 120.00237 * 6.31269 * 15 13 12 17 17 Si 1.86803 * 120.00142 * 186.30763 * 15 13 12 18 18 H 1.48499 * 109.47094 * 94.99022 * 17 15 13 19 19 H 1.48501 * 109.47285 * 214.98816 * 17 15 13 20 20 H 1.48497 * 109.47172 * 334.98615 * 17 15 13 21 21 N 1.33808 * 120.65650 * 359.81216 * 12 11 10 22 22 C 1.31160 * 121.51118 * 359.97438 * 21 12 11 23 23 C 1.37820 * 119.82665 * 179.97438 * 2 1 3 24 24 H 1.09001 * 109.47257 * 90.00273 * 1 2 3 25 25 H 1.09006 * 109.47358 * 210.00216 * 1 2 3 26 26 H 1.08999 * 109.46980 * 330.00486 * 1 2 3 27 27 H 1.07998 * 119.80073 * 359.69724 * 3 2 1 28 28 H 0.97002 * 120.00121 * 179.97438 * 7 6 4 29 29 H 0.96993 * 119.99811 * 359.97438 * 7 6 4 30 30 H 1.07998 * 120.70067 * 0.02562 * 10 9 8 31 31 H 1.08000 * 120.36410 * 180.24464 * 11 10 9 32 32 H 0.97003 * 120.00377 * 179.97438 * 16 15 13 33 33 H 1.08006 * 119.66468 * 180.02562 * 22 21 12 34 34 H 1.07999 * 120.03251 * 0.05249 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.2022 0.0000 4 6 3.5781 1.2157 0.0005 5 17 4.4308 2.7278 -0.0001 6 6 4.2852 0.0201 0.0005 7 7 5.6778 0.0306 0.0005 8 6 3.5891 -1.1985 0.0005 9 6 4.3297 -2.4772 0.0011 10 6 4.0151 -3.4786 0.9332 11 6 4.7196 -4.6485 0.8989 12 6 5.7405 -4.8100 -0.0590 13 6 6.4756 -6.0114 -0.0991 14 1 6.3269 -6.7612 0.6638 15 6 7.3992 -6.2334 -1.1285 16 7 7.6701 -5.2795 -1.9806 17 14 8.2439 -7.8922 -1.2839 18 1 7.4988 -8.7386 -2.2502 19 1 9.6344 -7.6963 -1.7671 20 1 8.2702 -8.5605 0.0419 21 7 6.0190 -3.8337 -0.9306 22 6 5.3577 -2.7010 -0.9255 23 6 2.1925 -1.1956 0.0005 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6505 2.1340 -0.0050 28 1 6.1692 -0.8058 0.0009 29 1 6.1564 0.8742 0.0002 30 1 3.2301 -3.3288 1.6597 31 1 4.4987 -5.4396 1.6001 32 1 8.3100 -5.4331 -2.6933 33 1 5.6071 -1.9331 -1.6429 34 1 1.6502 -2.1296 0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244579505.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:37 Heat of formation + Delta-G solvation = 34.547995 kcal Electronic energy + Delta-G solvation = -19422.421177 eV Core-core repulsion = 16344.836446 eV Total energy + Delta-G solvation = -3077.584731 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.46949 -37.94621 -36.19702 -34.83701 -33.77886 -31.72316 -30.58915 -30.34666 -28.88731 -25.93979 -25.33380 -22.64134 -21.98788 -21.14117 -19.93077 -17.62090 -16.88497 -16.71784 -15.69969 -15.36511 -14.40215 -14.31589 -14.16970 -13.73779 -13.65970 -13.52099 -12.78012 -12.68939 -12.33065 -12.12269 -12.10120 -11.57892 -11.39558 -11.30578 -11.19606 -11.10672 -10.83826 -10.70988 -10.39639 -10.11270 -9.95400 -9.51869 -8.60693 -8.31111 -7.70765 -7.63838 -6.88955 -6.57355 -4.64708 1.55748 1.85741 2.44828 2.62927 2.96171 2.99901 3.03109 3.08418 3.81693 4.11525 4.28849 4.60024 5.12862 5.26400 5.45654 5.62006 5.70815 5.77731 5.79518 5.93475 5.97950 6.09452 6.13544 6.32295 6.49541 6.59011 6.67249 6.78196 6.92366 6.99603 7.16848 7.26215 7.45212 7.65087 7.85555 7.88458 8.05930 8.16701 8.47897 8.76067 9.94335 10.12526 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.025811 B = 0.003999 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.551976 B = 6999.337424 C = 7781.505917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.137 4.137 3 C -0.087 4.087 4 C -0.113 4.113 5 Cl -0.092 7.092 6 C 0.223 3.777 7 N -0.866 5.866 8 C -0.042 4.042 9 C -0.267 4.267 10 C -0.035 4.035 11 C -0.270 4.270 12 C 0.252 3.748 13 C -0.416 4.416 14 H 0.086 0.914 15 C 0.066 3.934 16 N -0.705 5.705 17 Si 0.910 3.090 18 H -0.268 1.268 19 H -0.274 1.274 20 H -0.260 1.260 21 N -0.484 5.484 22 C 0.141 3.859 23 C -0.077 4.077 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.121 0.879 28 H 0.408 0.592 29 H 0.393 0.607 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.276 0.724 33 H 0.120 0.880 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.369 8.487 2.107 10.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.140 4.140 3 C -0.106 4.106 4 C -0.144 4.144 5 Cl -0.064 7.064 6 C 0.115 3.885 7 N -0.407 5.407 8 C -0.048 4.048 9 C -0.273 4.273 10 C -0.058 4.058 11 C -0.293 4.293 12 C 0.128 3.872 13 C -0.446 4.446 14 H 0.105 0.895 15 C -0.161 4.161 16 N -0.325 5.325 17 Si 0.734 3.266 18 H -0.193 1.193 19 H -0.199 1.199 20 H -0.184 1.184 21 N -0.196 5.196 22 C -0.027 4.027 23 C -0.096 4.096 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.139 0.861 28 H 0.241 0.759 29 H 0.222 0.778 30 H 0.114 0.886 31 H 0.118 0.882 32 H 0.087 0.913 33 H 0.137 0.863 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.458 8.447 1.329 10.145 hybrid contribution 0.132 -0.339 0.508 0.625 sum -5.326 8.108 1.837 9.874 Atomic orbital electron populations 1.20612 0.91468 1.02008 1.01627 1.19404 0.95563 0.92298 1.06688 1.20465 0.91044 0.97871 1.01228 1.20125 0.92287 0.84249 1.17762 1.98293 1.78073 1.32304 1.97686 1.17580 0.84723 0.91440 0.94765 1.42701 1.03061 1.11534 1.83387 1.18293 0.92227 0.90577 1.03661 1.18837 1.06834 0.95103 1.06526 1.20600 0.96774 0.92781 0.95660 1.21419 1.03546 0.98674 1.05668 1.18634 0.89324 0.92003 0.87200 1.19702 1.16211 1.00527 1.08203 0.89540 1.26152 0.96328 0.98448 0.95177 1.70124 1.22025 1.31336 1.08993 0.86264 0.78793 0.81714 0.79856 1.19293 1.19942 1.18359 1.68804 1.26860 0.99740 1.24196 1.22734 0.90515 0.95320 0.94147 1.21024 0.92823 0.97144 0.98590 0.91969 0.91977 0.92280 0.86114 0.75931 0.77842 0.88557 0.88196 0.91292 0.86286 0.86081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.11 10.00 36.00 0.36 -0.75 16 2 C -0.14 -1.99 5.88 -104.65 -0.61 -2.60 16 3 C -0.09 -1.25 9.46 -39.47 -0.37 -1.63 16 4 C -0.11 -1.76 6.33 -39.36 -0.25 -2.01 16 5 Cl -0.09 -1.26 27.59 -51.86 -1.43 -2.69 16 6 C 0.22 3.85 6.69 -83.45 -0.56 3.29 16 7 N -0.87 -14.05 8.58 32.61 0.28 -13.77 16 8 C -0.04 -0.78 5.51 -104.68 -0.58 -1.36 16 9 C -0.27 -5.65 5.11 -104.46 -0.53 -6.18 16 10 C -0.03 -0.74 9.61 -39.36 -0.38 -1.12 16 11 C -0.27 -6.31 9.76 -39.16 -0.38 -6.69 16 12 C 0.25 6.54 6.54 -84.98 -0.56 5.99 16 13 C -0.42 -10.59 9.11 -37.89 -0.35 -10.93 16 14 H 0.09 2.05 7.86 -52.49 -0.41 1.64 16 15 C 0.07 1.59 5.49 -17.33 -0.10 1.50 16 16 N -0.70 -17.88 11.47 55.55 0.64 -17.24 16 17 Si 0.91 17.68 29.57 -169.99 -5.03 12.65 16 18 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 19 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 20 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 21 N -0.48 -12.63 7.86 -10.83 -0.09 -12.71 16 22 C 0.14 3.24 8.90 -17.10 -0.15 3.08 16 23 C -0.08 -1.27 9.18 -39.20 -0.36 -1.63 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.64 8.08 -51.93 -0.42 0.23 16 26 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 27 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 28 H 0.41 7.17 5.99 -40.82 -0.24 6.93 16 29 H 0.39 5.57 7.50 -40.82 -0.31 5.27 16 30 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 31 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 32 H 0.28 6.32 8.29 -40.82 -0.34 5.98 16 33 H 0.12 2.57 7.50 -52.48 -0.39 2.18 16 34 H 0.12 1.92 8.05 -52.49 -0.42 1.50 16 LS Contribution 307.59 15.07 4.64 4.64 Total: -1.00 -26.79 307.59 -9.25 -36.04 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -3.44 Total: 14.14 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: -4.81 Total: -21.05 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: 0.83 Total: -43.72 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.03 Total: 12.65 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -1.43 Total: -2.69 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -26.79 -9.25 -36.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244579505.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.588 kcal (2) G-P(sol) polarization free energy of solvation -26.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds