Wall clock time and date at job start Tue Mar 31 2020 05:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38589 * 119.83319 * 2 1 4 4 C 1.38179 * 120.39117 * 179.97438 * 3 2 1 5 5 Cl 1.73598 * 119.97526 * 179.97438 * 4 3 2 6 6 C 1.38905 * 120.04165 * 0.02562 * 4 3 2 7 7 N 1.39264 * 120.16604 * 179.97438 * 6 4 3 8 8 C 1.40337 * 119.66464 * 359.97438 * 6 4 3 9 9 C 1.47760 * 120.18741 * 180.02562 * 8 6 4 10 10 C 1.40380 * 120.35008 * 129.70430 * 9 8 6 11 11 C 1.36610 * 118.59831 * 179.79420 * 10 9 8 12 12 C 1.40918 * 119.26586 * 0.43104 * 11 10 9 13 13 C 1.40905 * 119.67141 * 179.78365 * 12 11 10 14 14 H 1.07997 * 120.00215 * 353.67965 * 13 12 11 15 15 C 1.40068 * 120.00093 * 173.67439 * 13 12 11 16 16 N 1.30740 * 120.00237 * 6.31269 * 15 13 12 17 17 Si 1.86803 * 120.00142 * 186.30763 * 15 13 12 18 18 H 1.48499 * 109.47094 * 94.99022 * 17 15 13 19 19 H 1.48501 * 109.47285 * 214.98816 * 17 15 13 20 20 H 1.48497 * 109.47172 * 334.98615 * 17 15 13 21 21 N 1.33808 * 120.65650 * 359.81216 * 12 11 10 22 22 C 1.31160 * 121.51118 * 359.97438 * 21 12 11 23 23 C 1.37820 * 119.82665 * 179.97438 * 2 1 3 24 24 H 1.09001 * 109.47257 * 90.00273 * 1 2 3 25 25 H 1.09006 * 109.47358 * 210.00216 * 1 2 3 26 26 H 1.08999 * 109.46980 * 330.00486 * 1 2 3 27 27 H 1.07998 * 119.80073 * 359.69724 * 3 2 1 28 28 H 0.97002 * 120.00121 * 179.97438 * 7 6 4 29 29 H 0.96993 * 119.99811 * 359.97438 * 7 6 4 30 30 H 1.07998 * 120.70067 * 0.02562 * 10 9 8 31 31 H 1.08000 * 120.36410 * 180.24464 * 11 10 9 32 32 H 0.97003 * 120.00377 * 179.97438 * 16 15 13 33 33 H 1.08006 * 119.66468 * 180.02562 * 22 21 12 34 34 H 1.07999 * 120.03251 * 0.05249 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.2022 0.0000 4 6 3.5781 1.2157 0.0005 5 17 4.4308 2.7278 -0.0001 6 6 4.2852 0.0201 0.0005 7 7 5.6778 0.0306 0.0005 8 6 3.5891 -1.1985 0.0005 9 6 4.3297 -2.4772 0.0011 10 6 4.0151 -3.4786 0.9332 11 6 4.7196 -4.6485 0.8989 12 6 5.7405 -4.8100 -0.0590 13 6 6.4756 -6.0114 -0.0991 14 1 6.3269 -6.7612 0.6638 15 6 7.3992 -6.2334 -1.1285 16 7 7.6701 -5.2795 -1.9806 17 14 8.2439 -7.8922 -1.2839 18 1 7.4988 -8.7386 -2.2502 19 1 9.6344 -7.6963 -1.7671 20 1 8.2702 -8.5605 0.0419 21 7 6.0190 -3.8337 -0.9306 22 6 5.3577 -2.7010 -0.9255 23 6 2.1925 -1.1956 0.0005 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6505 2.1340 -0.0050 28 1 6.1692 -0.8058 0.0009 29 1 6.1564 0.8742 0.0002 30 1 3.2301 -3.3288 1.6597 31 1 4.4987 -5.4396 1.6001 32 1 8.3100 -5.4331 -2.6933 33 1 5.6071 -1.9331 -1.6429 34 1 1.6502 -2.1296 0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244579505.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:37 Heat of formation + Delta-G solvation = 21.036219 kcal Electronic energy + Delta-G solvation = -19423.007091 eV Core-core repulsion = 16344.836446 eV Total energy + Delta-G solvation = -3078.170646 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.88620 -39.58402 -37.36957 -36.14909 -35.46760 -33.31240 -32.33776 -31.49658 -30.46177 -27.55553 -26.53121 -24.17363 -23.71764 -22.59968 -21.34820 -19.42681 -18.19303 -18.04327 -17.40144 -16.72311 -16.07103 -15.97229 -15.49666 -15.08945 -14.89069 -14.71772 -14.37496 -14.09805 -13.78690 -13.74257 -13.18692 -12.96001 -12.84860 -12.74389 -12.63330 -12.49412 -12.40230 -11.98021 -11.82969 -11.64606 -11.27818 -11.15187 -10.27096 -9.93725 -9.52453 -9.18715 -8.37257 -8.21106 -6.50191 0.21116 0.58842 0.93698 1.17748 1.28687 1.40627 1.53359 1.54929 2.20492 2.72152 2.90771 3.01270 3.87194 3.90804 4.12866 4.14495 4.30098 4.40187 4.45475 4.59572 4.80506 4.87204 4.90354 4.98069 5.09394 5.13669 5.18987 5.29137 5.37496 5.50262 5.68436 5.72277 5.91376 6.02616 6.10011 6.23900 6.51617 6.67495 6.86871 6.92056 8.13113 8.38134 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.025811 B = 0.003999 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.551976 B = 6999.337424 C = 7781.505917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.134 4.134 3 C -0.077 4.077 4 C -0.119 4.119 5 Cl -0.075 7.075 6 C 0.211 3.789 7 N -0.866 5.866 8 C -0.077 4.077 9 C -0.243 4.243 10 C -0.038 4.038 11 C -0.283 4.283 12 C 0.221 3.779 13 C -0.457 4.457 14 H 0.092 0.908 15 C 0.024 3.976 16 N -0.748 5.748 17 Si 0.988 3.012 18 H -0.264 1.264 19 H -0.268 1.268 20 H -0.253 1.253 21 N -0.516 5.516 22 C 0.124 3.876 23 C -0.078 4.078 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.149 0.851 28 H 0.400 0.600 29 H 0.401 0.599 30 H 0.124 0.876 31 H 0.112 0.888 32 H 0.281 0.719 33 H 0.125 0.875 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.091 9.695 2.582 12.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.136 4.136 3 C -0.096 4.096 4 C -0.151 4.151 5 Cl -0.046 7.046 6 C 0.104 3.896 7 N -0.406 5.406 8 C -0.083 4.083 9 C -0.248 4.248 10 C -0.062 4.062 11 C -0.305 4.305 12 C 0.097 3.903 13 C -0.487 4.487 14 H 0.110 0.890 15 C -0.199 4.199 16 N -0.370 5.370 17 Si 0.808 3.192 18 H -0.189 1.189 19 H -0.192 1.192 20 H -0.177 1.177 21 N -0.228 5.228 22 C -0.042 4.042 23 C -0.097 4.097 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.167 0.833 28 H 0.231 0.769 29 H 0.231 0.769 30 H 0.142 0.858 31 H 0.130 0.870 32 H 0.092 0.908 33 H 0.142 0.858 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.203 9.708 1.811 12.223 hybrid contribution 0.476 -0.417 0.404 0.751 sum -6.726 9.291 2.215 11.682 Atomic orbital electron populations 1.20685 0.88700 1.03440 1.02774 1.19772 0.97496 0.91360 1.04973 1.20877 0.90631 0.99120 0.99012 1.20290 0.92993 0.84531 1.17286 1.98301 1.77873 1.30829 1.97594 1.17687 0.84943 0.91816 0.95190 1.42665 1.02991 1.11530 1.83461 1.18238 0.93163 0.89741 1.07145 1.19060 1.05202 0.96041 1.04546 1.20918 0.97041 0.92164 0.96050 1.21599 1.03431 0.99921 1.05593 1.19047 0.90566 0.92535 0.88186 1.20020 1.17943 1.01095 1.09660 0.89010 1.27032 0.96423 1.02181 0.94232 1.70216 1.23216 1.33591 1.09953 0.85111 0.77591 0.76610 0.79926 1.18909 1.19238 1.17661 1.68725 1.28269 1.00711 1.25119 1.22899 0.91391 0.94842 0.95027 1.21162 0.92017 0.98429 0.98105 0.90852 0.91264 0.90257 0.83309 0.76912 0.76870 0.85833 0.87042 0.90846 0.85791 0.85701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.80 10.00 71.23 0.71 -1.08 16 2 C -0.13 -3.43 5.88 -19.88 -0.12 -3.55 16 3 C -0.08 -1.97 9.46 22.34 0.21 -1.75 16 4 C -0.12 -3.46 6.33 22.42 0.14 -3.32 16 5 Cl -0.07 -1.87 27.59 -2.72 -0.08 -1.94 16 6 C 0.21 7.08 6.69 38.63 0.26 7.34 16 7 N -0.87 -27.95 8.58 -50.74 -0.44 -28.39 16 8 C -0.08 -2.80 5.51 -19.90 -0.11 -2.91 16 9 C -0.24 -10.34 5.11 -19.76 -0.10 -10.44 16 10 C -0.04 -1.63 9.61 22.41 0.22 -1.41 16 11 C -0.28 -13.48 9.76 22.55 0.22 -13.26 16 12 C 0.22 11.93 6.54 40.15 0.26 12.20 16 13 C -0.46 -24.12 9.11 23.37 0.21 -23.91 16 14 H 0.09 4.51 7.86 -2.91 -0.02 4.48 16 15 C 0.02 1.19 5.49 85.30 0.47 1.66 16 16 N -0.75 -39.52 11.47 21.85 0.25 -39.27 16 17 Si 0.99 37.00 29.57 68.60 2.03 39.03 16 18 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 19 H -0.27 -9.61 7.11 99.48 0.71 -8.90 16 20 H -0.25 -9.08 7.11 99.48 0.71 -8.37 16 21 N -0.52 -28.08 7.86 -188.17 -1.48 -29.56 16 22 C 0.12 5.90 8.90 85.27 0.76 6.66 16 23 C -0.08 -2.43 9.18 22.52 0.21 -2.23 16 24 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.07 1.18 8.08 -2.38 -0.02 1.16 16 26 H 0.08 1.14 8.08 -2.39 -0.02 1.12 16 27 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 28 H 0.40 14.40 5.99 -92.71 -0.55 13.84 16 29 H 0.40 11.19 7.50 -92.71 -0.69 10.49 16 30 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 31 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 32 H 0.28 13.37 8.29 -92.71 -0.77 12.61 16 33 H 0.12 5.58 7.50 -2.91 -0.02 5.55 16 34 H 0.13 3.72 8.05 -2.91 -0.02 3.70 16 Total: -1.00 -59.45 307.59 3.54 -55.92 By element: Atomic # 1 Polarization: 40.32 SS G_CDS: -0.09 Total: 40.23 kcal Atomic # 6 Polarization: -39.35 SS G_CDS: 3.34 Total: -36.01 kcal Atomic # 7 Polarization: -95.55 SS G_CDS: -1.66 Total: -97.22 kcal Atomic # 14 Polarization: 37.00 SS G_CDS: 2.03 Total: 39.03 kcal Atomic # 17 Polarization: -1.87 SS G_CDS: -0.08 Total: -1.94 kcal Total: -59.45 3.54 -55.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244579505.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.951 kcal (2) G-P(sol) polarization free energy of solvation -59.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds