Wall clock time and date at job start Tue Mar 31 2020 05:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30787 * 1 3 3 Si 1.86806 * 120.00007 * 2 1 4 4 H 1.48504 * 109.46791 * 85.17762 * 3 2 1 5 5 H 1.48497 * 109.47458 * 205.17761 * 3 2 1 6 6 H 1.48503 * 109.47302 * 325.18137 * 3 2 1 7 7 C 1.40013 * 120.00290 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99604 * 197.21959 * 7 2 1 9 9 C 1.41050 * 119.99903 * 17.21359 * 7 2 1 10 10 C 1.41304 * 120.55099 * 204.58279 * 9 7 2 11 11 C 1.36595 * 118.41269 * 179.75722 * 10 9 7 12 12 C 1.39917 * 119.46757 * 0.51981 * 11 10 9 13 13 C 1.47948 * 119.45028 * 179.73905 * 12 11 10 14 14 C 1.39738 * 120.45439 * 359.70702 * 13 12 11 15 15 N 1.31707 * 120.93269 * 179.74430 * 14 13 12 16 16 C 1.32020 * 122.01135 * 0.54309 * 15 14 13 17 17 F 1.35097 * 119.59872 * 179.74202 * 16 15 14 18 18 C 1.40083 * 120.79869 * 359.72340 * 16 15 14 19 19 C 1.47580 * 120.51317 * 180.02562 * 18 16 15 20 20 O 1.21492 * 119.99536 * 359.97280 * 19 18 16 21 21 O 1.34719 * 120.00571 * 179.97438 * 19 18 16 22 22 C 1.39745 * 120.45232 * 179.97438 * 13 12 11 23 23 N 1.33024 * 121.09581 * 359.72327 * 12 11 10 24 24 C 1.31272 * 121.72309 * 0.02562 * 23 12 11 25 25 H 0.97006 * 120.00458 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.79656 * 0.02562 * 10 9 7 27 27 H 1.08001 * 120.26629 * 180.26410 * 11 10 9 28 28 H 1.07995 * 119.53539 * 359.97438 * 14 13 12 29 29 H 0.96702 * 117.00345 * 179.97438 * 21 19 18 30 30 H 1.08005 * 120.90677 * 0.02562 * 22 13 12 31 31 H 1.07993 * 119.80024 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 2.3874 2.1053 1.3952 5 1 3.5867 1.4130 -0.5956 6 1 1.4940 2.6212 -0.7994 7 6 2.0080 -1.2125 -0.0005 8 1 3.0517 -1.2335 0.2764 9 6 1.3502 -2.4065 -0.3626 10 6 1.8223 -3.6554 0.1001 11 6 1.1490 -4.7837 -0.2733 12 6 0.0284 -4.6734 -1.1039 13 6 -0.6972 -5.8962 -1.5127 14 6 -0.2667 -7.1532 -1.0802 15 7 -0.9084 -8.2475 -1.4343 16 6 -1.9722 -8.2131 -2.2154 17 9 -2.5901 -9.3662 -2.5525 18 6 -2.4682 -6.9954 -2.6986 19 6 -3.6582 -6.9642 -3.5710 20 8 -4.2152 -8.0001 -3.8757 21 8 -4.1268 -5.7873 -4.0295 22 6 -1.8192 -5.8102 -2.3413 23 7 -0.3955 -3.4873 -1.5318 24 6 0.2145 -2.3743 -1.1968 25 1 -0.4851 0.8401 0.0004 26 1 2.6922 -3.7161 0.7372 27 1 1.4813 -5.7535 0.0666 28 1 0.6024 -7.2283 -0.4434 29 1 -4.9084 -5.8175 -4.5980 30 1 -2.1746 -4.8542 -2.6966 31 1 -0.1561 -1.4281 -1.5624 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244750879.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:44 Heat of formation + Delta-G solvation = -75.574218 kcal Electronic energy + Delta-G solvation = -21062.584955 eV Core-core repulsion = 17416.055497 eV Total energy + Delta-G solvation = -3646.529458 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.070 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.77488 -40.43323 -39.45512 -38.29983 -36.06059 -34.57103 -32.85149 -31.86810 -31.30955 -29.10166 -25.93996 -25.14243 -23.59485 -22.31701 -21.71419 -20.53492 -18.17558 -17.95135 -17.77401 -17.15127 -16.66394 -16.14990 -15.79527 -15.36443 -15.24519 -14.56279 -14.30014 -13.87534 -13.40697 -13.33309 -13.28351 -12.84836 -12.61136 -12.36840 -11.85620 -11.76801 -11.59087 -11.52650 -11.19693 -11.12834 -10.69391 -10.43945 -9.98422 -9.72753 -9.61471 -9.10767 -8.68900 -8.21800 -7.55114 -7.29726 -4.78748 0.46081 1.10572 2.30310 2.60638 2.70091 2.83097 2.87374 2.89639 2.95353 3.57412 3.69351 3.78881 4.33565 4.50432 4.86531 5.02026 5.10509 5.38420 5.47282 5.69766 5.89336 5.97177 6.17631 6.35341 6.41147 6.52568 6.60316 6.67103 6.72076 6.96542 7.25718 7.46241 7.69528 7.72667 7.85640 7.94071 8.28440 8.34764 9.37540 9.63837 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.029329 B = 0.003652 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.448100 B = 7664.442319 C = 8540.705388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.070 3.930 3 Si 0.919 3.081 4 H -0.266 1.266 5 H -0.256 1.256 6 H -0.270 1.270 7 C -0.419 4.419 8 H 0.089 0.911 9 C 0.069 3.931 10 C -0.203 4.203 11 C -0.101 4.101 12 C -0.025 4.025 13 C -0.041 4.041 14 C 0.141 3.859 15 N -0.508 5.508 16 C 0.325 3.675 17 F -0.099 7.099 18 C -0.200 4.200 19 C 0.536 3.464 20 O -0.507 6.507 21 O -0.505 6.505 22 C 0.005 3.995 23 N -0.453 5.453 24 C 0.050 3.950 25 H 0.293 0.707 26 H 0.108 0.892 27 H 0.105 0.895 28 H 0.173 0.827 29 H 0.414 0.586 30 H 0.166 0.834 31 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.672 -3.037 -2.819 4.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.153 4.153 3 Si 0.742 3.258 4 H -0.190 1.190 5 H -0.179 1.179 6 H -0.194 1.194 7 C -0.447 4.447 8 H 0.108 0.892 9 C 0.064 3.936 10 C -0.227 4.227 11 C -0.122 4.122 12 C -0.155 4.155 13 C -0.044 4.044 14 C -0.016 4.016 15 N -0.221 5.221 16 C 0.170 3.830 17 F -0.078 7.078 18 C -0.205 4.205 19 C 0.379 3.621 20 O -0.397 6.397 21 O -0.316 6.316 22 C -0.020 4.020 23 N -0.160 5.160 24 C -0.120 4.120 25 H 0.104 0.896 26 H 0.126 0.874 27 H 0.122 0.878 28 H 0.190 0.810 29 H 0.272 0.728 30 H 0.183 0.817 31 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.168 -4.046 -2.885 5.422 hybrid contribution 0.155 1.259 0.015 1.269 sum -2.012 -2.787 -2.870 4.478 Atomic orbital electron populations 1.69734 1.07930 1.30867 1.30152 1.26170 0.94949 1.02300 0.91855 0.86089 0.80747 0.79372 0.79595 1.19046 1.17925 1.19423 1.19802 0.98240 0.90856 1.35850 0.89250 1.18682 0.92660 0.92894 0.89394 1.20993 1.03357 0.92601 1.05718 1.21143 0.95535 0.97938 0.97542 1.18350 0.99067 0.89784 1.08328 1.19676 0.94719 0.93860 0.96168 1.22874 0.97417 0.85520 0.95811 1.67054 1.07590 1.33713 1.13738 1.17976 0.90297 0.80486 0.94196 1.91662 1.79747 1.47028 1.89374 1.19713 0.99521 0.94431 1.06802 1.20424 0.82902 0.81056 0.77698 1.90929 1.58311 1.34102 1.56339 1.84602 1.48558 1.34359 1.64082 1.22012 0.91317 0.97549 0.91129 1.67043 1.29628 0.98054 1.21283 1.22948 0.96056 0.94606 0.98412 0.89572 0.87406 0.87755 0.81019 0.72752 0.81698 0.82887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -16.91 10.96 55.55 0.61 -16.30 16 2 C 0.07 1.48 5.16 -17.33 -0.09 1.39 16 3 Si 0.92 15.69 29.59 -169.99 -5.03 10.66 16 4 H -0.27 -4.51 7.11 56.52 0.40 -4.11 16 5 H -0.26 -4.35 7.11 56.52 0.40 -3.95 16 6 H -0.27 -4.53 7.11 56.52 0.40 -4.13 16 7 C -0.42 -9.40 9.06 -37.85 -0.34 -9.75 16 8 H 0.09 1.88 7.90 -52.48 -0.41 1.47 16 9 C 0.07 1.60 5.58 -106.64 -0.60 1.01 16 10 C -0.20 -4.26 9.87 -39.01 -0.39 -4.65 16 11 C -0.10 -1.97 9.39 -39.55 -0.37 -2.34 16 12 C -0.03 -0.52 6.74 -82.74 -0.56 -1.08 16 13 C -0.04 -0.74 5.89 -104.80 -0.62 -1.35 16 14 C 0.14 2.27 10.58 -17.04 -0.18 2.09 16 15 N -0.51 -8.66 10.34 -12.84 -0.13 -8.79 16 16 C 0.33 5.65 8.41 -16.78 -0.14 5.51 16 17 F -0.10 -1.77 15.57 2.25 0.04 -1.73 16 18 C -0.20 -3.31 5.89 -104.82 -0.62 -3.93 16 19 C 0.54 8.21 8.27 34.54 0.29 8.49 16 20 O -0.51 -8.80 16.14 -19.26 -0.31 -9.11 16 21 O -0.50 -6.05 12.75 -40.54 -0.52 -6.57 16 22 C 0.01 0.09 9.24 -38.45 -0.36 -0.26 16 23 N -0.45 -10.23 9.45 -9.10 -0.09 -10.31 16 24 C 0.05 1.17 9.88 -16.77 -0.17 1.00 16 25 H 0.29 5.80 8.30 -40.82 -0.34 5.46 16 26 H 0.11 2.05 8.06 -52.49 -0.42 1.63 16 27 H 0.10 1.64 6.16 -52.49 -0.32 1.32 16 28 H 0.17 2.30 6.15 -52.49 -0.32 1.98 16 29 H 0.41 2.76 9.11 45.56 0.42 3.18 16 30 H 0.17 2.84 7.24 -52.48 -0.38 2.46 16 31 H 0.15 3.66 6.17 -52.49 -0.32 3.34 16 LS Contribution 289.19 15.07 4.36 4.36 Total: -1.00 -26.92 289.19 -6.11 -33.03 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -0.91 Total: 8.64 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -4.13 Total: -3.87 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: 0.39 Total: -35.41 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.83 Total: -15.67 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 15.69 SS G_CDS: -5.03 Total: 10.66 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -26.92 -6.11 -33.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244750879.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.539 kcal (2) G-P(sol) polarization free energy of solvation -26.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds