Wall clock time and date at job start Tue Mar 31 2020 05:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30787 * 1 3 3 Si 1.86806 * 120.00007 * 2 1 4 4 H 1.48504 * 109.46791 * 85.17762 * 3 2 1 5 5 H 1.48497 * 109.47458 * 205.17761 * 3 2 1 6 6 H 1.48503 * 109.47302 * 325.18137 * 3 2 1 7 7 C 1.40013 * 120.00290 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99604 * 197.21959 * 7 2 1 9 9 C 1.41050 * 119.99903 * 17.21359 * 7 2 1 10 10 C 1.41304 * 120.55099 * 204.58279 * 9 7 2 11 11 C 1.36595 * 118.41269 * 179.75722 * 10 9 7 12 12 C 1.39917 * 119.46757 * 0.51981 * 11 10 9 13 13 C 1.47948 * 119.45028 * 179.73905 * 12 11 10 14 14 C 1.39738 * 120.45439 * 359.70702 * 13 12 11 15 15 N 1.31707 * 120.93269 * 179.74430 * 14 13 12 16 16 C 1.32020 * 122.01135 * 0.54309 * 15 14 13 17 17 F 1.35097 * 119.59872 * 179.74202 * 16 15 14 18 18 C 1.40083 * 120.79869 * 359.72340 * 16 15 14 19 19 C 1.47580 * 120.51317 * 180.02562 * 18 16 15 20 20 O 1.21492 * 119.99536 * 359.97280 * 19 18 16 21 21 O 1.34719 * 120.00571 * 179.97438 * 19 18 16 22 22 C 1.39745 * 120.45232 * 179.97438 * 13 12 11 23 23 N 1.33024 * 121.09581 * 359.72327 * 12 11 10 24 24 C 1.31272 * 121.72309 * 0.02562 * 23 12 11 25 25 H 0.97006 * 120.00458 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.79656 * 0.02562 * 10 9 7 27 27 H 1.08001 * 120.26629 * 180.26410 * 11 10 9 28 28 H 1.07995 * 119.53539 * 359.97438 * 14 13 12 29 29 H 0.96702 * 117.00345 * 179.97438 * 21 19 18 30 30 H 1.08005 * 120.90677 * 0.02562 * 22 13 12 31 31 H 1.07993 * 119.80024 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 2.3874 2.1053 1.3952 5 1 3.5867 1.4130 -0.5956 6 1 1.4940 2.6212 -0.7994 7 6 2.0080 -1.2125 -0.0005 8 1 3.0517 -1.2335 0.2764 9 6 1.3502 -2.4065 -0.3626 10 6 1.8223 -3.6554 0.1001 11 6 1.1490 -4.7837 -0.2733 12 6 0.0284 -4.6734 -1.1039 13 6 -0.6972 -5.8962 -1.5127 14 6 -0.2667 -7.1532 -1.0802 15 7 -0.9084 -8.2475 -1.4343 16 6 -1.9722 -8.2131 -2.2154 17 9 -2.5901 -9.3662 -2.5525 18 6 -2.4682 -6.9954 -2.6986 19 6 -3.6582 -6.9642 -3.5710 20 8 -4.2152 -8.0001 -3.8757 21 8 -4.1268 -5.7873 -4.0295 22 6 -1.8192 -5.8102 -2.3413 23 7 -0.3955 -3.4873 -1.5318 24 6 0.2145 -2.3743 -1.1968 25 1 -0.4851 0.8401 0.0004 26 1 2.6922 -3.7161 0.7372 27 1 1.4813 -5.7535 0.0666 28 1 0.6024 -7.2283 -0.4434 29 1 -4.9084 -5.8175 -4.5980 30 1 -2.1746 -4.8542 -2.6966 31 1 -0.1561 -1.4281 -1.5624 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244750879.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:43 Heat of formation + Delta-G solvation = -91.950164 kcal Electronic energy + Delta-G solvation = -21063.295070 eV Core-core repulsion = 17416.055497 eV Total energy + Delta-G solvation = -3647.239572 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.070 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.17863 -41.72988 -40.78745 -39.85136 -37.19638 -36.14349 -34.24602 -33.32162 -32.93549 -30.64005 -27.49016 -26.48420 -25.04158 -23.77397 -23.24665 -21.98195 -19.58213 -19.28940 -19.20437 -18.46001 -18.03824 -17.48242 -17.32174 -16.79104 -16.48526 -16.14021 -15.74703 -15.29000 -14.77806 -14.75984 -14.71136 -14.18050 -14.04515 -13.87371 -13.40433 -13.28920 -13.01765 -12.74566 -12.70781 -12.56234 -12.00399 -11.88283 -11.41712 -11.19269 -10.97719 -10.57181 -10.31267 -9.88049 -9.14324 -8.85069 -6.45787 -0.86305 -0.29558 0.82019 1.05060 1.30823 1.42650 1.54328 1.59156 1.76840 2.15937 2.34835 2.38584 2.78081 3.15810 3.47584 3.68123 3.72085 3.76441 4.21289 4.28111 4.49206 4.55861 4.72538 4.75957 5.01589 5.05261 5.14471 5.28684 5.32997 5.40572 5.65316 5.85730 6.06458 6.29834 6.35656 6.66189 6.70398 6.84173 7.69635 8.11756 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.029329 B = 0.003652 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.448100 B = 7664.442319 C = 8540.705388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.036 3.964 3 Si 0.989 3.011 4 H -0.261 1.261 5 H -0.254 1.254 6 H -0.266 1.266 7 C -0.453 4.453 8 H 0.095 0.905 9 C 0.043 3.957 10 C -0.210 4.210 11 C -0.101 4.101 12 C -0.026 4.026 13 C -0.058 4.058 14 C 0.164 3.836 15 N -0.514 5.514 16 C 0.326 3.674 17 F -0.102 7.102 18 C -0.202 4.202 19 C 0.543 3.457 20 O -0.530 6.530 21 O -0.497 6.497 22 C 0.012 3.988 23 N -0.467 5.467 24 C 0.020 3.980 25 H 0.299 0.701 26 H 0.126 0.874 27 H 0.148 0.852 28 H 0.205 0.795 29 H 0.438 0.562 30 H 0.161 0.839 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.184 -3.927 -2.654 4.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.183 4.183 3 Si 0.809 3.191 4 H -0.186 1.186 5 H -0.177 1.177 6 H -0.190 1.190 7 C -0.481 4.481 8 H 0.113 0.887 9 C 0.038 3.962 10 C -0.234 4.234 11 C -0.121 4.121 12 C -0.158 4.158 13 C -0.061 4.061 14 C 0.007 3.993 15 N -0.228 5.228 16 C 0.172 3.828 17 F -0.081 7.081 18 C -0.207 4.207 19 C 0.387 3.613 20 O -0.421 6.421 21 O -0.311 6.311 22 C -0.014 4.014 23 N -0.175 5.175 24 C -0.148 4.148 25 H 0.110 0.890 26 H 0.144 0.856 27 H 0.166 0.834 28 H 0.221 0.779 29 H 0.301 0.699 30 H 0.179 0.821 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.703 -4.909 -2.738 5.873 hybrid contribution -0.127 1.287 -0.107 1.298 sum -1.830 -3.621 -2.845 4.956 Atomic orbital electron populations 1.69781 1.09340 1.31961 1.31315 1.26954 0.95479 1.05090 0.90802 0.85065 0.79281 0.75199 0.79603 1.18554 1.17733 1.19035 1.20048 0.98709 0.91668 1.37662 0.88727 1.18971 0.93013 0.94335 0.89927 1.21314 1.03994 0.92426 1.05706 1.21532 0.94578 0.99432 0.96534 1.18834 0.99379 0.89883 1.07711 1.19652 0.95340 0.93671 0.97488 1.23284 0.97303 0.84267 0.94469 1.67164 1.07695 1.33898 1.14009 1.18180 0.90237 0.80577 0.93827 1.91658 1.79837 1.47238 1.89372 1.19749 1.00078 0.93838 1.07045 1.20175 0.82388 0.81408 0.77288 1.90927 1.58937 1.35027 1.57240 1.84556 1.49765 1.32552 1.64194 1.21969 0.91099 0.97594 0.90711 1.66996 1.30104 0.98638 1.21797 1.22759 0.97407 0.94508 1.00078 0.88986 0.85621 0.83438 0.77865 0.69895 0.82131 0.84499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -36.65 10.96 21.84 0.24 -36.41 16 2 C 0.04 1.55 5.16 85.28 0.44 1.99 16 3 Si 0.99 32.33 29.59 68.60 2.03 34.36 16 4 H -0.26 -8.26 7.11 99.48 0.71 -7.55 16 5 H -0.25 -8.12 7.11 99.48 0.71 -7.41 16 6 H -0.27 -8.42 7.11 99.48 0.71 -7.71 16 7 C -0.45 -20.78 9.06 23.39 0.21 -20.57 16 8 H 0.09 4.05 7.90 -2.91 -0.02 4.02 16 9 C 0.04 2.01 5.58 -21.17 -0.12 1.90 16 10 C -0.21 -8.66 9.87 22.64 0.22 -8.43 16 11 C -0.10 -3.71 9.39 22.29 0.21 -3.50 16 12 C -0.03 -1.04 6.74 41.95 0.28 -0.76 16 13 C -0.06 -1.98 5.89 -19.98 -0.12 -2.09 16 14 C 0.16 4.74 10.58 85.07 0.90 5.64 16 15 N -0.51 -16.08 10.34 -194.55 -2.01 -18.10 16 16 C 0.33 10.65 8.41 85.11 0.72 11.37 16 17 F -0.10 -3.47 15.57 44.97 0.70 -2.77 16 18 C -0.20 -6.35 5.89 -20.00 -0.12 -6.46 16 19 C 0.54 15.73 8.27 70.29 0.58 16.31 16 20 O -0.53 -17.56 16.14 19.86 0.32 -17.24 16 21 O -0.50 -10.92 12.75 -56.29 -0.72 -11.64 16 22 C 0.01 0.39 9.24 23.00 0.21 0.60 16 23 N -0.47 -21.37 9.45 -182.71 -1.73 -23.10 16 24 C 0.02 0.97 9.88 85.44 0.84 1.81 16 25 H 0.30 12.23 8.30 -92.70 -0.77 11.46 16 26 H 0.13 4.60 8.06 -2.91 -0.02 4.57 16 27 H 0.15 4.00 6.16 -2.91 -0.02 3.98 16 28 H 0.20 4.47 6.15 -2.91 -0.02 4.45 16 29 H 0.44 4.80 9.11 -74.06 -0.67 4.13 16 30 H 0.16 5.42 7.24 -2.91 -0.02 5.40 16 31 H 0.14 6.95 6.17 -2.91 -0.02 6.94 16 Total: -1.00 -58.47 289.19 3.66 -54.81 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: 0.56 Total: 22.28 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: 4.27 Total: -2.20 kcal Atomic # 7 Polarization: -74.11 SS G_CDS: -3.50 Total: -77.61 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -0.40 Total: -28.87 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.70 Total: -2.77 kcal Atomic # 14 Polarization: 32.33 SS G_CDS: 2.03 Total: 34.36 kcal Total: -58.47 3.66 -54.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244750879.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.137 kcal (2) G-P(sol) polarization free energy of solvation -58.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds