Wall clock time and date at job start Tue Mar 31 2020 05:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86798 * 120.00017 * 2 1 4 4 H 1.48498 * 109.47091 * 266.21541 * 3 2 1 5 5 H 1.48502 * 109.47222 * 26.21709 * 3 2 1 6 6 H 1.48506 * 109.46878 * 146.21323 * 3 2 1 7 7 C 1.40019 * 119.99778 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99913 * 347.53115 * 7 2 1 9 9 C 1.41369 * 120.00120 * 167.54143 * 7 2 1 10 10 C 1.40707 * 119.77167 * 158.74900 * 9 7 2 11 11 C 1.38256 * 119.18967 * 179.97438 * 10 9 7 12 12 C 1.38721 * 118.69307 * 359.97438 * 11 10 9 13 13 C 1.39873 * 119.46308 * 0.02562 * 12 11 10 14 14 C 1.48303 * 119.60926 * 179.97438 * 13 12 11 15 15 C 1.39507 * 120.43047 * 345.76503 * 14 13 12 16 16 N 1.31748 * 120.96778 * 180.27822 * 15 14 13 17 17 C 1.31995 * 121.99116 * 359.97438 * 16 15 14 18 18 F 1.35095 * 119.62831 * 180.02562 * 17 16 15 19 19 C 1.40039 * 120.74749 * 0.02562 * 17 16 15 20 20 C 1.47571 * 120.52187 * 180.02562 * 19 17 16 21 21 O 1.21487 * 119.99804 * 359.97438 * 20 19 17 22 22 O 1.34720 * 120.00099 * 179.97438 * 20 19 17 23 23 C 1.39511 * 120.43303 * 166.04188 * 14 13 12 24 24 N 1.32246 * 120.78772 * 0.26512 * 13 12 11 25 25 H 0.97000 * 120.00298 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.40486 * 359.95147 * 10 9 7 27 27 H 1.08004 * 120.65465 * 179.97438 * 11 10 9 28 28 H 1.08003 * 120.27227 * 179.97438 * 12 11 10 29 29 H 1.07995 * 119.51776 * 0.25215 * 15 14 13 30 30 H 0.96699 * 116.99931 * 180.02562 * 22 20 19 31 31 H 1.07997 * 120.90495 * 359.74476 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.5690 2.0002 -1.3970 5 1 1.4012 2.6745 0.6185 6 1 3.4967 1.4645 0.7786 7 6 2.0075 -1.2126 -0.0005 8 1 1.4865 -2.1370 0.2010 9 6 3.3962 -1.2270 -0.2647 10 6 4.1768 -2.3182 0.1594 11 6 5.5337 -2.3201 -0.1058 12 6 6.0812 -1.2411 -0.7844 13 6 5.2533 -0.1855 -1.1803 14 6 5.8353 0.9698 -1.9055 15 6 7.2169 1.1606 -1.9378 16 7 7.7449 2.1862 -2.5742 17 6 7.0015 3.0748 -3.2067 18 9 7.5934 4.1082 -3.8445 19 6 5.6060 2.9584 -3.2241 20 6 4.7797 3.9544 -3.9333 21 8 5.3093 4.8847 -4.5077 22 8 3.4381 3.8320 -3.9438 23 6 5.0080 1.8832 -2.5594 24 7 3.9587 -0.2027 -0.9107 25 1 -0.4850 0.8400 0.0004 26 1 3.7216 -3.1440 0.6858 27 1 6.1552 -3.1453 0.2092 28 1 7.1382 -1.2160 -1.0046 29 1 7.8630 0.4575 -1.4334 30 1 2.9393 4.5085 -4.4217 31 1 3.9347 1.7633 -2.5525 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244752648.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:12 Heat of formation + Delta-G solvation = -72.636742 kcal Electronic energy + Delta-G solvation = -21813.661785 eV Core-core repulsion = 18167.259706 eV Total energy + Delta-G solvation = -3646.402080 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.070 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.06617 -40.66629 -39.66634 -38.52272 -36.14872 -34.04849 -33.21230 -32.28090 -31.35609 -29.37096 -26.13504 -25.42540 -23.92565 -22.69992 -21.53346 -20.67185 -18.32683 -18.21202 -17.77508 -17.36533 -16.69006 -16.37889 -16.01145 -15.39257 -15.06018 -14.78862 -14.39498 -14.24365 -13.71162 -13.55843 -13.22900 -13.20817 -12.73438 -12.67656 -12.22197 -11.70609 -11.66336 -11.05761 -10.98166 -10.92676 -10.61693 -10.28356 -10.18029 -9.84715 -9.62800 -9.27579 -8.72153 -8.15224 -7.80590 -7.08600 -4.86972 0.21645 0.81543 2.14996 2.38158 2.54443 2.76270 3.22535 3.27758 3.39068 3.39865 3.57864 4.10346 4.21037 4.36816 4.52912 4.76412 4.84645 5.25080 5.32188 5.39161 5.65712 5.80005 5.98411 6.04867 6.26693 6.32548 6.37438 6.38239 6.65902 6.92421 7.06152 7.24498 7.39677 7.58834 7.76220 7.96400 8.30389 8.40617 9.24833 9.86205 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.016481 B = 0.006734 C = 0.004989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.535093 B = 4157.286233 C = 5611.327147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.088 3.912 3 Si 0.973 3.027 4 H -0.259 1.259 5 H -0.319 1.319 6 H -0.268 1.268 7 C -0.412 4.412 8 H 0.099 0.901 9 C 0.250 3.750 10 C -0.241 4.241 11 C -0.049 4.049 12 C -0.288 4.288 13 C 0.194 3.806 14 C -0.095 4.095 15 C 0.182 3.818 16 N -0.516 5.516 17 C 0.361 3.639 18 F -0.091 7.091 19 C -0.212 4.212 20 C 0.536 3.464 21 O -0.505 6.505 22 O -0.502 6.502 23 C 0.027 3.973 24 N -0.556 5.556 25 H 0.290 0.710 26 H 0.112 0.888 27 H 0.109 0.891 28 H 0.108 0.892 29 H 0.182 0.818 30 H 0.417 0.583 31 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.357 3.487 -3.791 8.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.136 4.136 3 Si 0.806 3.194 4 H -0.185 1.185 5 H -0.250 1.250 6 H -0.194 1.194 7 C -0.443 4.443 8 H 0.117 0.883 9 C 0.126 3.874 10 C -0.264 4.264 11 C -0.073 4.073 12 C -0.312 4.312 13 C 0.054 3.946 14 C -0.098 4.098 15 C 0.024 3.976 16 N -0.230 5.230 17 C 0.207 3.793 18 F -0.069 7.069 19 C -0.217 4.217 20 C 0.379 3.621 21 O -0.394 6.394 22 O -0.313 6.313 23 C 0.002 3.998 24 N -0.274 5.274 25 H 0.101 0.899 26 H 0.130 0.870 27 H 0.127 0.873 28 H 0.126 0.874 29 H 0.199 0.801 30 H 0.276 0.724 31 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 7.786 4.285 -3.996 9.744 hybrid contribution -0.334 0.419 -0.124 0.550 sum 7.452 4.704 -4.120 9.728 Atomic orbital electron populations 1.69627 1.08554 1.31200 1.32264 1.26301 0.94806 1.03182 0.89278 0.85123 0.77760 0.76601 0.79947 1.18529 1.25023 1.19366 1.19496 0.90054 0.96093 1.38670 0.88264 1.18483 0.93619 0.87018 0.88267 1.21828 0.93829 1.02194 1.08509 1.20928 0.94923 0.96287 0.95137 1.21082 0.98864 0.98197 1.13042 1.18919 0.90367 0.90843 0.94510 1.19863 0.93576 0.96527 0.99800 1.23038 0.92565 0.91296 0.90655 1.67212 1.39869 1.04364 1.11527 1.18132 0.85768 0.85055 0.90392 1.91703 1.84484 1.53328 1.77426 1.19788 0.91862 1.00665 1.09421 1.20281 0.81083 0.83382 0.77328 1.90937 1.73745 1.32358 1.42346 1.84625 1.19137 1.55659 1.71881 1.22556 1.03316 0.87577 0.86370 1.67068 1.10288 1.29395 1.20659 0.89939 0.86996 0.87277 0.87356 0.80140 0.72438 0.80560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.01 13.92 55.55 0.77 -19.23 16 2 C 0.09 2.19 5.51 -17.35 -0.10 2.10 16 3 Si 0.97 21.95 25.27 -169.99 -4.30 17.65 16 4 H -0.26 -5.54 4.96 56.52 0.28 -5.26 16 5 H -0.32 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.27 -6.34 6.91 56.52 0.39 -5.95 16 7 C -0.41 -10.39 9.67 -37.72 -0.36 -10.75 16 8 H 0.10 2.55 8.06 -52.49 -0.42 2.13 16 9 C 0.25 5.89 6.04 -85.01 -0.51 5.38 16 10 C -0.24 -4.99 9.83 -38.64 -0.38 -5.37 16 11 C -0.05 -0.89 10.15 -39.40 -0.40 -1.29 16 12 C -0.29 -5.08 9.44 -38.79 -0.37 -5.45 16 13 C 0.19 3.84 6.69 -82.94 -0.55 3.28 16 14 C -0.09 -1.63 5.86 -104.81 -0.61 -2.24 16 15 C 0.18 2.65 10.54 -17.11 -0.18 2.47 16 16 N -0.52 -8.04 10.34 -12.91 -0.13 -8.17 16 17 C 0.36 5.86 8.41 -16.81 -0.14 5.72 16 18 F -0.09 -1.50 15.57 2.25 0.04 -1.47 16 19 C -0.21 -3.45 5.89 -104.82 -0.62 -4.07 16 20 C 0.54 8.25 8.27 34.54 0.29 8.54 16 21 O -0.50 -8.57 16.14 -19.26 -0.31 -8.88 16 22 O -0.50 -6.47 12.75 -40.55 -0.52 -6.98 16 23 C 0.03 0.47 9.20 -38.51 -0.35 0.12 16 24 N -0.56 -12.64 4.97 -7.68 -0.04 -12.68 16 25 H 0.29 6.66 8.29 -40.82 -0.34 6.33 16 26 H 0.11 2.15 8.06 -52.49 -0.42 1.72 16 27 H 0.11 1.60 8.06 -52.48 -0.42 1.17 16 28 H 0.11 1.52 6.42 -52.48 -0.34 1.18 16 29 H 0.18 2.08 6.40 -52.49 -0.34 1.74 16 30 H 0.42 3.10 9.11 45.56 0.42 3.51 16 31 H 0.18 3.31 4.98 -52.49 -0.26 3.05 16 LS Contribution 282.83 15.07 4.26 4.26 Total: -1.00 -28.56 282.83 -5.57 -34.13 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -1.05 Total: 2.94 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -4.30 Total: -1.57 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.60 Total: -40.09 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.83 Total: -15.87 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.30 Total: 17.65 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.56 -5.57 -34.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244752648.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.506 kcal (2) G-P(sol) polarization free energy of solvation -28.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds