Wall clock time and date at job start Tue Mar 31 2020 05:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30730 * 1 3 3 Si 1.86795 * 120.00194 * 2 1 4 4 H 1.48495 * 109.47411 * 274.67598 * 3 2 1 5 5 H 1.48502 * 109.47193 * 34.67634 * 3 2 1 6 6 H 1.48498 * 109.47380 * 154.67382 * 3 2 1 7 7 C 1.40047 * 120.00003 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00272 * 197.28164 * 7 2 1 9 9 C 1.41526 * 120.00238 * 17.27878 * 7 2 1 10 10 C 1.41143 * 120.98467 * 23.19028 * 9 7 2 11 11 C 1.37726 * 119.07927 * 179.97438 * 10 9 7 12 12 N 1.31933 * 121.15584 * 0.02562 * 11 10 9 13 13 C 1.32795 * 122.20323 * 359.97438 * 12 11 10 14 14 C 1.48365 * 119.61168 * 179.97438 * 13 12 11 15 15 C 1.39474 * 120.42628 * 179.73071 * 14 13 12 16 16 N 1.31761 * 120.96888 * 179.69672 * 15 14 13 17 17 C 1.31976 * 121.98651 * 0.59150 * 16 15 14 18 18 F 1.35099 * 119.62636 * 179.71716 * 17 16 15 19 19 C 1.40026 * 120.74370 * 359.69763 * 17 16 15 20 20 C 1.47566 * 120.52129 * 180.02562 * 19 17 16 21 21 O 1.21496 * 120.00491 * 359.97438 * 20 19 17 22 22 O 1.34735 * 119.99976 * 179.97438 * 20 19 17 23 23 C 1.39470 * 120.43090 * 0.02562 * 14 13 12 24 24 C 1.38908 * 120.77414 * 0.02562 * 13 12 11 25 25 H 0.97001 * 120.00166 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.46175 * 0.02562 * 10 9 7 27 27 H 1.07999 * 119.43063 * 180.02562 * 11 10 9 28 28 H 1.07997 * 119.51223 * 359.97438 * 15 14 13 29 29 H 0.96698 * 116.99949 * 180.02562 * 22 20 19 30 30 H 1.07993 * 120.89745 * 0.02562 * 23 14 13 31 31 H 1.07990 * 120.62138 * 179.97438 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.3900 2.1035 -1.3953 5 1 1.4917 2.6221 0.7966 6 1 3.5848 1.4136 0.5989 7 6 2.0075 -1.2128 0.0005 8 1 3.0510 -1.2339 0.2784 9 6 1.3479 -2.4110 -0.3630 10 6 0.1902 -2.3871 -1.1700 11 6 -0.4201 -3.5767 -1.5006 12 7 0.0585 -4.7304 -1.0759 13 6 1.1438 -4.8093 -0.3147 14 6 1.6317 -6.1377 0.1310 15 6 2.7729 -6.2407 0.9261 16 7 3.2122 -7.4144 1.3328 17 6 2.6076 -8.5400 1.0024 18 9 3.1026 -9.7179 1.4415 19 6 1.4587 -8.5272 0.2021 20 6 0.7862 -9.7887 -0.1640 21 8 1.2291 -10.8496 0.2290 22 8 -0.3190 -9.7641 -0.9342 23 6 0.9585 -7.3000 -0.2448 24 6 1.8270 -3.6627 0.0699 25 1 -0.4850 0.8400 -0.0004 26 1 -0.2110 -1.4490 -1.5242 27 1 -1.3060 -3.5650 -2.1182 28 1 3.3018 -5.3449 1.2162 29 1 -0.7246 -10.6156 -1.1473 30 1 0.0750 -7.2535 -0.8640 31 1 2.7091 -3.7297 0.6893 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244753111.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:25 Heat of formation + Delta-G solvation = -90.137006 kcal Electronic energy + Delta-G solvation = -21072.104313 eV Core-core repulsion = 17424.943365 eV Total energy + Delta-G solvation = -3647.160948 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.070 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.28317 -41.81675 -40.81664 -39.83943 -37.18421 -36.11748 -34.36173 -33.54013 -32.62347 -30.02889 -27.97269 -26.62875 -25.10431 -24.02107 -23.00790 -22.09267 -19.63540 -19.34394 -19.11057 -18.35916 -17.92155 -17.55718 -17.33585 -16.50276 -16.45351 -16.17413 -15.88315 -15.43300 -14.85243 -14.84288 -14.77537 -14.33082 -14.13847 -13.95090 -13.67380 -13.15310 -12.93218 -12.76336 -12.69405 -12.14606 -11.92471 -11.79101 -11.43642 -11.24485 -11.04437 -10.70103 -10.02270 -9.95582 -9.10865 -8.71862 -6.56829 -0.94332 -0.38387 0.86236 0.94856 1.34058 1.42751 1.55303 1.58087 1.73103 2.18899 2.23864 2.36154 2.80406 3.01692 3.31598 3.57524 3.67055 3.72696 4.10528 4.28195 4.40617 4.51353 4.74298 4.91152 4.98190 5.05935 5.20852 5.21607 5.41349 5.42038 5.49676 5.91028 6.10328 6.26845 6.49927 6.77443 6.79686 6.84796 7.59646 8.22328 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.031707 B = 0.003637 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.864205 B = 7697.551096 C = 8505.046878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.041 3.959 3 Si 0.984 3.016 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.255 1.255 7 C -0.481 4.481 8 H 0.088 0.912 9 C 0.099 3.901 10 C -0.230 4.230 11 C 0.091 3.909 12 N -0.569 5.569 13 C 0.153 3.847 14 C -0.096 4.096 15 C 0.189 3.811 16 N -0.522 5.522 17 C 0.352 3.648 18 F -0.097 7.097 19 C -0.211 4.211 20 C 0.546 3.454 21 O -0.529 6.529 22 O -0.494 6.494 23 C 0.045 3.955 24 C -0.262 4.262 25 H 0.293 0.707 26 H 0.117 0.883 27 H 0.151 0.849 28 H 0.199 0.801 29 H 0.439 0.561 30 H 0.175 0.825 31 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.270 -8.049 -1.364 8.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.177 4.177 3 Si 0.804 3.196 4 H -0.188 1.188 5 H -0.194 1.194 6 H -0.179 1.179 7 C -0.512 4.512 8 H 0.106 0.894 9 C 0.091 3.909 10 C -0.252 4.252 11 C -0.061 4.061 12 N -0.284 5.284 13 C 0.019 3.981 14 C -0.099 4.099 15 C 0.032 3.968 16 N -0.236 5.236 17 C 0.197 3.803 18 F -0.076 7.076 19 C -0.216 4.216 20 C 0.390 3.610 21 O -0.421 6.421 22 O -0.309 6.309 23 C 0.019 3.981 24 C -0.285 4.285 25 H 0.104 0.896 26 H 0.134 0.866 27 H 0.168 0.832 28 H 0.215 0.785 29 H 0.303 0.697 30 H 0.192 0.808 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.632 -8.707 -0.877 8.774 hybrid contribution -0.308 0.915 -0.242 0.995 sum 0.324 -7.793 -1.119 7.879 Atomic orbital electron populations 1.69788 1.09132 1.31205 1.33370 1.26794 0.95447 1.04659 0.90815 0.85149 0.79292 0.75723 0.79418 1.18760 1.19418 1.17884 1.19962 0.98625 0.91701 1.40884 0.89350 1.18133 0.91376 0.93146 0.88196 1.22314 1.00912 0.98590 1.03379 1.22309 0.98532 0.87708 0.97551 1.67298 1.14562 1.29183 1.17323 1.19026 0.92823 0.90436 0.95795 1.19704 0.97040 0.92911 1.00242 1.23293 0.91012 0.94105 0.88401 1.67264 1.33123 0.97782 1.25405 1.18308 0.88846 0.81999 0.91121 1.91688 1.86834 1.42132 1.86900 1.19783 0.99535 0.93993 1.08262 1.20044 0.78589 0.87399 0.74999 1.90945 1.65382 1.32603 1.53136 1.84536 1.39363 1.43409 1.63543 1.22063 0.97040 0.88010 0.90966 1.22046 1.05259 0.92381 1.08806 0.89582 0.86563 0.83195 0.78469 0.69735 0.80798 0.85487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.04 10.90 21.84 0.24 -37.80 16 2 C 0.04 1.84 5.20 85.30 0.44 2.28 16 3 Si 0.98 34.04 29.59 68.60 2.03 36.07 16 4 H -0.26 -8.91 7.11 99.48 0.71 -8.20 16 5 H -0.27 -8.99 7.11 99.48 0.71 -8.29 16 6 H -0.26 -8.60 7.11 99.48 0.71 -7.89 16 7 C -0.48 -22.96 9.12 23.52 0.21 -22.74 16 8 H 0.09 3.99 7.90 -2.91 -0.02 3.96 16 9 C 0.10 4.78 5.61 -21.12 -0.12 4.66 16 10 C -0.23 -10.86 8.80 22.86 0.20 -10.66 16 11 C 0.09 3.87 11.15 84.56 0.94 4.82 16 12 N -0.57 -23.63 9.46 -185.36 -1.75 -25.38 16 13 C 0.15 6.11 6.73 41.86 0.28 6.39 16 14 C -0.10 -3.14 5.89 -19.99 -0.12 -3.25 16 15 C 0.19 5.57 10.58 85.00 0.90 6.47 16 16 N -0.52 -16.05 10.34 -194.80 -2.02 -18.06 16 17 C 0.35 10.82 8.41 85.10 0.72 11.53 16 18 F -0.10 -3.09 15.57 44.97 0.70 -2.39 16 19 C -0.21 -6.00 5.89 -19.99 -0.12 -6.12 16 20 C 0.55 14.09 8.27 70.28 0.58 14.68 16 21 O -0.53 -16.16 16.14 19.85 0.32 -15.84 16 22 O -0.49 -9.07 12.75 -56.45 -0.72 -9.79 16 23 C 0.04 1.31 9.24 22.96 0.21 1.53 16 24 C -0.26 -11.12 9.26 23.07 0.21 -10.91 16 25 H 0.29 12.38 8.29 -92.71 -0.77 11.61 16 26 H 0.12 5.70 6.16 -2.91 -0.02 5.68 16 27 H 0.15 5.45 8.06 -2.91 -0.02 5.42 16 28 H 0.20 5.06 6.17 -2.91 -0.02 5.04 16 29 H 0.44 3.38 9.11 -74.06 -0.67 2.70 16 30 H 0.17 4.99 7.25 -2.91 -0.02 4.96 16 31 H 0.13 4.69 6.19 -2.92 -0.02 4.67 16 Total: -1.00 -58.56 289.37 3.71 -54.85 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 0.56 Total: 19.68 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: 4.35 Total: -1.33 kcal Atomic # 7 Polarization: -77.71 SS G_CDS: -3.53 Total: -81.25 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -0.40 Total: -25.63 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.70 Total: -2.39 kcal Atomic # 14 Polarization: 34.04 SS G_CDS: 2.03 Total: 36.07 kcal Total: -58.56 3.71 -54.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244753111.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.287 kcal (2) G-P(sol) polarization free energy of solvation -58.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds