Wall clock time and date at job start Tue Mar 31 2020 05:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30692 * 1 3 3 Si 1.86810 * 119.99919 * 2 1 4 4 H 1.48499 * 109.46822 * 239.99559 * 3 2 1 5 5 H 1.48497 * 109.47065 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46970 * 119.99919 * 3 2 1 7 7 C 1.40170 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99665 * 164.34607 * 7 2 1 9 9 C 1.40921 * 119.99702 * 344.34393 * 7 2 1 10 10 C 1.41117 * 121.11273 * 334.62138 * 9 7 2 11 11 C 1.36477 * 119.10967 * 179.97438 * 10 9 7 12 12 N 1.32213 * 121.51043 * 359.97438 * 11 10 9 13 13 C 1.31677 * 122.50033 * 0.02562 * 12 11 10 14 14 C 1.39307 * 120.66061 * 0.28252 * 13 12 11 15 15 C 1.47850 * 120.78168 * 179.69998 * 14 13 12 16 16 C 1.39796 * 120.46254 * 129.72176 * 15 14 13 17 17 N 1.31696 * 120.93211 * 179.72776 * 16 15 14 18 18 C 1.32024 * 122.01008 * 0.58402 * 17 16 15 19 19 F 1.35103 * 119.58823 * 179.69981 * 18 17 16 20 20 C 1.40080 * 120.81727 * 359.68196 * 18 17 16 21 21 C 1.47586 * 120.51061 * 180.02562 * 20 18 17 22 22 O 1.21489 * 119.99871 * 359.97438 * 21 20 18 23 23 O 1.34722 * 120.00098 * 179.97438 * 21 20 18 24 24 C 1.39758 * 118.98610 * 0.02562 * 20 18 17 25 25 H 0.97003 * 119.99701 * 0.02562 * 1 2 3 26 26 H 1.08006 * 120.44347 * 359.95521 * 10 9 7 27 27 H 1.07992 * 119.24531 * 179.97438 * 11 10 9 28 28 H 1.08004 * 119.66361 * 180.02562 * 13 12 11 29 29 H 1.08005 * 119.53580 * 0.02562 * 16 15 14 30 30 H 0.96704 * 117.00055 * 179.97438 * 23 21 20 31 31 H 1.07999 * 120.91432 * 179.97438 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6178 0.0000 4 1 3.0947 1.6964 -1.2125 5 1 1.2759 2.7465 -0.0006 6 1 3.0947 1.6965 1.2125 7 6 2.0078 -1.2139 0.0005 8 1 3.0577 -1.2313 -0.2518 9 6 1.3423 -2.4115 0.3304 10 6 0.1913 -2.4051 1.1467 11 6 -0.4213 -3.5889 1.4401 12 7 0.0390 -4.7385 0.9769 13 6 1.1072 -4.8158 0.2108 14 6 1.8116 -3.6675 -0.1440 15 6 3.0152 -3.7519 -0.9985 16 6 3.1422 -2.9357 -2.1263 17 7 4.2126 -2.9994 -2.8910 18 6 5.2030 -3.8357 -2.6403 19 9 6.2758 -3.8644 -3.4609 20 6 5.1553 -4.6934 -1.5337 21 6 6.2664 -5.6252 -1.2595 22 8 7.2319 -5.6528 -1.9964 23 8 6.2101 -6.4452 -0.1921 24 6 4.0393 -4.6532 -0.6933 25 1 -0.4850 0.8401 -0.0004 26 1 -0.1996 -1.4758 1.5344 27 1 -1.3021 -3.5865 2.0649 28 1 1.4429 -5.7796 -0.1426 29 1 2.3536 -2.2396 -2.3714 30 1 6.9614 -7.0381 -0.0538 31 1 3.9699 -5.3008 0.1682 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244754826.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:27 Heat of formation + Delta-G solvation = -76.510033 kcal Electronic energy + Delta-G solvation = -21714.171641 eV Core-core repulsion = 18067.601603 eV Total energy + Delta-G solvation = -3646.570038 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.070 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.74242 -40.41171 -39.42830 -38.25246 -36.07338 -34.48526 -33.11231 -32.14376 -30.46112 -28.57787 -26.38261 -24.98529 -23.66017 -22.28122 -21.69699 -20.42371 -18.10019 -17.99344 -17.67918 -17.04435 -16.62331 -16.13381 -15.75467 -15.23214 -14.88539 -14.66400 -14.50556 -14.04044 -13.43872 -13.10007 -12.85596 -12.81132 -12.73842 -12.43014 -12.25358 -11.66721 -11.61562 -11.49200 -11.24229 -10.79973 -10.54810 -10.14812 -9.91308 -9.68071 -9.59713 -8.97660 -8.27098 -8.13130 -7.67812 -7.14986 -4.92012 0.58345 1.23885 2.39302 2.58772 2.66411 2.87799 2.90125 2.90455 3.05760 3.64237 3.76466 3.89010 4.35500 4.60073 4.91982 5.16676 5.21912 5.37992 5.57932 5.78296 5.92727 5.98863 6.16226 6.35226 6.39995 6.58233 6.64189 6.81463 6.86339 7.04648 7.20414 7.50311 7.77305 7.83694 7.86186 8.12160 8.38224 8.40681 9.36078 9.72280 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.015455 B = 0.005979 C = 0.004689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.267494 B = 4681.820392 C = 5969.620149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.080 3.920 3 Si 0.909 3.091 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.444 4.444 8 H 0.085 0.915 9 C 0.149 3.851 10 C -0.204 4.204 11 C 0.086 3.914 12 N -0.575 5.575 13 C 0.141 3.859 14 C -0.247 4.247 15 C -0.040 4.040 16 C 0.185 3.815 17 N -0.516 5.516 18 C 0.338 3.662 19 F -0.099 7.099 20 C -0.208 4.208 21 C 0.535 3.465 22 O -0.508 6.508 23 O -0.508 6.508 24 C -0.012 4.012 25 H 0.290 0.710 26 H 0.128 0.872 27 H 0.121 0.879 28 H 0.124 0.876 29 H 0.182 0.818 30 H 0.413 0.587 31 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.103 -3.877 0.355 6.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.184 1.184 7 C -0.474 4.474 8 H 0.103 0.897 9 C 0.142 3.858 10 C -0.225 4.225 11 C -0.061 4.061 12 N -0.289 5.289 13 C -0.019 4.019 14 C -0.253 4.253 15 C -0.043 4.043 16 C 0.028 3.972 17 N -0.230 5.230 18 C 0.184 3.816 19 F -0.078 7.078 20 C -0.213 4.213 21 C 0.379 3.621 22 O -0.397 6.397 23 O -0.320 6.320 24 C -0.037 4.037 25 H 0.101 0.899 26 H 0.146 0.854 27 H 0.139 0.861 28 H 0.141 0.859 29 H 0.199 0.801 30 H 0.272 0.728 31 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 4.427 -3.670 -0.406 5.765 hybrid contribution 1.401 0.766 0.402 1.647 sum 5.828 -2.903 -0.004 6.511 Atomic orbital electron populations 1.69708 1.07820 1.30526 1.31176 1.26031 0.94807 1.01809 0.91618 0.86295 0.80328 0.79423 0.80691 1.18283 1.19823 1.18418 1.19606 0.97599 0.90639 1.39516 0.89665 1.17690 0.90192 0.90885 0.87070 1.21925 0.99858 0.98438 1.02322 1.21780 0.98003 0.88737 0.97547 1.67365 1.15890 1.29051 1.16590 1.22108 0.91077 0.95614 0.93090 1.19174 1.00617 0.95574 1.09938 1.19689 0.94768 0.94821 0.95033 1.23340 0.92041 0.94344 0.87496 1.67197 1.01853 1.21071 1.32881 1.18113 0.84734 0.92171 0.86571 1.91667 1.50743 1.94682 1.70725 1.19616 0.97833 1.03066 1.00756 1.20461 0.85384 0.78450 0.77800 1.90931 1.33517 1.67564 1.47662 1.84573 1.50512 1.50508 1.46403 1.22038 0.89176 0.95875 0.96572 0.89864 0.85439 0.86136 0.85877 0.80093 0.72811 0.82824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -16.95 10.95 55.56 0.61 -16.34 16 2 C 0.08 1.72 5.21 -17.31 -0.09 1.62 16 3 Si 0.91 16.51 29.59 -169.99 -5.03 11.48 16 4 H -0.26 -4.76 7.11 56.52 0.40 -4.35 16 5 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 6 H -0.26 -4.77 7.11 56.52 0.40 -4.36 16 7 C -0.44 -9.87 7.31 -37.84 -0.28 -10.15 16 8 H 0.09 1.86 6.69 -52.49 -0.35 1.51 16 9 C 0.15 3.37 5.59 -106.26 -0.59 2.78 16 10 C -0.20 -4.59 8.72 -39.13 -0.34 -4.93 16 11 C 0.09 1.84 11.09 -18.02 -0.20 1.64 16 12 N -0.58 -12.44 10.32 -13.37 -0.14 -12.58 16 13 C 0.14 2.84 10.72 -17.22 -0.18 2.65 16 14 C -0.25 -5.05 5.56 -104.04 -0.58 -5.63 16 15 C -0.04 -0.73 5.00 -104.80 -0.52 -1.25 16 16 C 0.18 3.39 9.24 -17.03 -0.16 3.23 16 17 N -0.52 -9.59 10.34 -12.83 -0.13 -9.73 16 18 C 0.34 6.07 8.41 -16.78 -0.14 5.93 16 19 F -0.10 -1.83 15.57 2.25 0.04 -1.79 16 20 C -0.21 -3.39 5.89 -104.83 -0.62 -4.01 16 21 C 0.54 7.98 8.27 34.54 0.29 8.27 16 22 O -0.51 -8.75 16.14 -19.26 -0.31 -9.06 16 23 O -0.51 -5.64 12.75 -40.55 -0.52 -6.16 16 24 C -0.01 -0.19 9.26 -38.43 -0.36 -0.54 16 25 H 0.29 5.82 8.29 -40.82 -0.34 5.49 16 26 H 0.13 2.93 6.27 -52.48 -0.33 2.60 16 27 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 28 H 0.12 2.14 8.06 -52.48 -0.42 1.71 16 29 H 0.18 3.34 7.36 -52.48 -0.39 2.96 16 30 H 0.41 2.48 9.11 45.56 0.42 2.90 16 31 H 0.15 2.20 7.69 -52.49 -0.40 1.80 16 LS Contribution 288.78 15.07 4.35 4.35 Total: -1.00 -26.62 288.78 -5.94 -32.56 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -1.03 Total: 7.66 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -3.77 Total: -0.39 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.34 Total: -38.65 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.83 Total: -15.22 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 16.51 SS G_CDS: -5.03 Total: 11.48 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -26.62 -5.94 -32.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244754826.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.946 kcal (2) G-P(sol) polarization free energy of solvation -26.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds