Wall clock time and date at job start Tue Mar 31 2020 05:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30692 * 1 3 3 Si 1.86810 * 119.99919 * 2 1 4 4 H 1.48499 * 109.46822 * 239.99559 * 3 2 1 5 5 H 1.48497 * 109.47065 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46970 * 119.99919 * 3 2 1 7 7 C 1.40170 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99665 * 164.34607 * 7 2 1 9 9 C 1.40921 * 119.99702 * 344.34393 * 7 2 1 10 10 C 1.41117 * 121.11273 * 334.62138 * 9 7 2 11 11 C 1.36477 * 119.10967 * 179.97438 * 10 9 7 12 12 N 1.32213 * 121.51043 * 359.97438 * 11 10 9 13 13 C 1.31677 * 122.50033 * 0.02562 * 12 11 10 14 14 C 1.39307 * 120.66061 * 0.28252 * 13 12 11 15 15 C 1.47850 * 120.78168 * 179.69998 * 14 13 12 16 16 C 1.39796 * 120.46254 * 129.72176 * 15 14 13 17 17 N 1.31696 * 120.93211 * 179.72776 * 16 15 14 18 18 C 1.32024 * 122.01008 * 0.58402 * 17 16 15 19 19 F 1.35103 * 119.58823 * 179.69981 * 18 17 16 20 20 C 1.40080 * 120.81727 * 359.68196 * 18 17 16 21 21 C 1.47586 * 120.51061 * 180.02562 * 20 18 17 22 22 O 1.21489 * 119.99871 * 359.97438 * 21 20 18 23 23 O 1.34722 * 120.00098 * 179.97438 * 21 20 18 24 24 C 1.39758 * 118.98610 * 0.02562 * 20 18 17 25 25 H 0.97003 * 119.99701 * 0.02562 * 1 2 3 26 26 H 1.08006 * 120.44347 * 359.95521 * 10 9 7 27 27 H 1.07992 * 119.24531 * 179.97438 * 11 10 9 28 28 H 1.08004 * 119.66361 * 180.02562 * 13 12 11 29 29 H 1.08005 * 119.53580 * 0.02562 * 16 15 14 30 30 H 0.96704 * 117.00055 * 179.97438 * 23 21 20 31 31 H 1.07999 * 120.91432 * 179.97438 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6178 0.0000 4 1 3.0947 1.6964 -1.2125 5 1 1.2759 2.7465 -0.0006 6 1 3.0947 1.6965 1.2125 7 6 2.0078 -1.2139 0.0005 8 1 3.0577 -1.2313 -0.2518 9 6 1.3423 -2.4115 0.3304 10 6 0.1913 -2.4051 1.1467 11 6 -0.4213 -3.5889 1.4401 12 7 0.0390 -4.7385 0.9769 13 6 1.1072 -4.8158 0.2108 14 6 1.8116 -3.6675 -0.1440 15 6 3.0152 -3.7519 -0.9985 16 6 3.1422 -2.9357 -2.1263 17 7 4.2126 -2.9994 -2.8910 18 6 5.2030 -3.8357 -2.6403 19 9 6.2758 -3.8644 -3.4609 20 6 5.1553 -4.6934 -1.5337 21 6 6.2664 -5.6252 -1.2595 22 8 7.2319 -5.6528 -1.9964 23 8 6.2101 -6.4452 -0.1921 24 6 4.0393 -4.6532 -0.6933 25 1 -0.4850 0.8401 -0.0004 26 1 -0.1996 -1.4758 1.5344 27 1 -1.3021 -3.5865 2.0649 28 1 1.4429 -5.7796 -0.1426 29 1 2.3536 -2.2396 -2.3714 30 1 6.9614 -7.0381 -0.0538 31 1 3.9699 -5.3008 0.1682 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244754826.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:26 Heat of formation + Delta-G solvation = -92.505574 kcal Electronic energy + Delta-G solvation = -21714.865260 eV Core-core repulsion = 18067.601603 eV Total energy + Delta-G solvation = -3647.263657 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.070 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.16491 -41.69722 -40.75269 -39.80687 -37.14177 -36.11449 -34.57492 -33.57224 -32.08718 -30.11551 -28.01427 -26.31524 -25.09215 -23.65186 -23.32250 -21.85421 -19.57034 -19.25276 -19.12338 -18.34375 -17.97572 -17.49879 -17.30678 -16.44982 -16.41948 -16.20069 -16.07328 -15.35496 -14.82104 -14.52986 -14.38318 -14.30219 -14.08905 -13.99579 -13.72446 -13.25430 -13.04955 -12.76312 -12.65882 -12.12717 -12.00852 -11.71634 -11.37874 -11.19872 -11.00596 -10.45447 -9.93794 -9.77607 -9.25844 -8.75666 -6.59900 -0.76202 -0.15840 0.83951 0.99204 1.37905 1.39399 1.47469 1.55321 1.79798 2.13620 2.38796 2.49339 2.72476 3.23275 3.55628 3.66922 3.83500 4.02847 4.06861 4.40683 4.49825 4.57657 4.67447 4.89556 4.96674 5.05859 5.23872 5.38614 5.42948 5.45651 5.54927 5.85020 6.12531 6.41402 6.48428 6.72684 6.74749 6.88504 7.71607 8.13930 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.015455 B = 0.005979 C = 0.004689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.267494 B = 4681.820392 C = 5969.620149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.050 3.950 3 Si 0.967 3.033 4 H -0.262 1.262 5 H -0.265 1.265 6 H -0.261 1.261 7 C -0.461 4.461 8 H 0.083 0.917 9 C 0.126 3.874 10 C -0.224 4.224 11 C 0.083 3.917 12 N -0.588 5.588 13 C 0.136 3.864 14 C -0.243 4.243 15 C -0.050 4.050 16 C 0.182 3.818 17 N -0.530 5.530 18 C 0.329 3.671 19 F -0.104 7.104 20 C -0.203 4.203 21 C 0.546 3.454 22 O -0.533 6.533 23 O -0.493 6.493 24 C 0.010 3.990 25 H 0.296 0.704 26 H 0.116 0.884 27 H 0.141 0.859 28 H 0.154 0.846 29 H 0.173 0.827 30 H 0.439 0.561 31 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.077 -4.824 0.849 7.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.170 4.170 3 Si 0.788 3.212 4 H -0.186 1.186 5 H -0.189 1.189 6 H -0.186 1.186 7 C -0.491 4.491 8 H 0.101 0.899 9 C 0.118 3.882 10 C -0.246 4.246 11 C -0.064 4.064 12 N -0.302 5.302 13 C -0.022 4.022 14 C -0.249 4.249 15 C -0.053 4.053 16 C 0.025 3.975 17 N -0.244 5.244 18 C 0.175 3.825 19 F -0.083 7.083 20 C -0.208 4.208 21 C 0.390 3.610 22 O -0.424 6.424 23 O -0.307 6.307 24 C -0.014 4.014 25 H 0.108 0.892 26 H 0.134 0.866 27 H 0.158 0.842 28 H 0.172 0.828 29 H 0.190 0.810 30 H 0.302 0.698 31 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 5.406 -4.651 0.103 7.132 hybrid contribution 1.138 0.939 0.253 1.497 sum 6.543 -3.712 0.356 7.531 Atomic orbital electron populations 1.69738 1.08821 1.31550 1.31759 1.26638 0.95322 1.04059 0.90992 0.85441 0.79168 0.76436 0.80156 1.18636 1.18857 1.18558 1.19707 0.97566 0.91315 1.40489 0.89930 1.18013 0.90638 0.92047 0.87495 1.21913 1.00761 0.98489 1.03466 1.22073 0.98441 0.88410 0.97466 1.67441 1.16552 1.28941 1.17246 1.22576 0.90445 0.96784 0.92429 1.19307 1.01152 0.94996 1.09474 1.19576 0.94894 0.95928 0.94904 1.23164 0.91939 0.94476 0.87881 1.67129 1.02156 1.21765 1.33321 1.18306 0.84498 0.92561 0.87117 1.91655 1.50907 1.94743 1.70997 1.19701 0.98395 1.02820 0.99855 1.20091 0.84287 0.78391 0.78196 1.90937 1.34273 1.68400 1.48826 1.84508 1.51879 1.50092 1.44250 1.22182 0.87951 0.94710 0.96590 0.89221 0.86573 0.84179 0.82850 0.80994 0.69836 0.80406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -35.46 10.95 21.86 0.24 -35.22 16 2 C 0.05 2.17 5.21 85.33 0.44 2.61 16 3 Si 0.97 33.74 29.59 68.60 2.03 35.77 16 4 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 5 H -0.26 -8.75 7.11 99.48 0.71 -8.04 16 6 H -0.26 -9.10 7.11 99.48 0.71 -8.40 16 7 C -0.46 -20.71 7.31 23.40 0.17 -20.53 16 8 H 0.08 3.65 6.69 -2.91 -0.02 3.63 16 9 C 0.13 5.71 5.59 -20.92 -0.12 5.59 16 10 C -0.22 -10.21 8.72 22.57 0.20 -10.01 16 11 C 0.08 3.52 11.09 84.22 0.93 4.45 16 12 N -0.59 -24.65 10.32 -196.20 -2.02 -26.67 16 13 C 0.14 5.25 10.72 84.97 0.91 6.16 16 14 C -0.24 -9.75 5.56 -19.49 -0.11 -9.86 16 15 C -0.05 -1.76 5.00 -19.98 -0.10 -1.86 16 16 C 0.18 6.62 9.24 85.09 0.79 7.41 16 17 N -0.53 -19.44 10.34 -194.50 -2.01 -21.45 16 18 C 0.33 11.46 8.41 85.11 0.72 12.18 16 19 F -0.10 -3.74 15.57 44.97 0.70 -3.04 16 20 C -0.20 -6.16 5.89 -20.00 -0.12 -6.28 16 21 C 0.55 14.71 8.27 70.29 0.58 15.29 16 22 O -0.53 -17.22 16.14 19.87 0.32 -16.90 16 23 O -0.49 -8.95 12.75 -56.32 -0.72 -9.67 16 24 C 0.01 0.31 9.26 23.02 0.21 0.52 16 25 H 0.30 11.99 8.29 -92.71 -0.77 11.23 16 26 H 0.12 5.47 6.27 -2.91 -0.02 5.45 16 27 H 0.14 5.19 8.06 -2.91 -0.02 5.16 16 28 H 0.15 4.85 8.06 -2.91 -0.02 4.82 16 29 H 0.17 6.51 7.36 -2.91 -0.02 6.49 16 30 H 0.44 3.40 9.11 -74.05 -0.67 2.73 16 31 H 0.18 4.38 7.69 -2.91 -0.02 4.36 16 Total: -1.00 -56.19 288.78 3.60 -52.59 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: 0.55 Total: 18.92 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 4.51 Total: 5.67 kcal Atomic # 7 Polarization: -79.55 SS G_CDS: -3.80 Total: -83.34 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.40 Total: -26.57 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.70 Total: -3.04 kcal Atomic # 14 Polarization: 33.74 SS G_CDS: 2.03 Total: 35.77 kcal Total: -56.19 3.60 -52.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244754826.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.917 kcal (2) G-P(sol) polarization free energy of solvation -56.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds