Wall clock time and date at job start Tue Mar 31 2020 05:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86803 * 119.99675 * 2 1 4 4 H 1.48497 * 109.47029 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47233 * 300.00334 * 3 2 1 6 6 H 1.48498 * 109.47027 * 59.99987 * 3 2 1 7 7 C 1.39930 * 120.00427 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00007 * 197.55713 * 7 2 1 9 9 C 1.41437 * 119.99975 * 17.56067 * 7 2 1 10 10 C 1.40810 * 120.60853 * 203.74466 * 9 7 2 11 11 N 1.31491 * 120.66389 * 180.30425 * 10 9 7 12 12 C 1.31945 * 122.11810 * 359.71707 * 11 10 9 13 13 C 1.39656 * 121.15390 * 0.02562 * 12 11 10 14 14 C 1.48429 * 120.40699 * 179.97438 * 13 12 11 15 15 C 1.39444 * 120.42838 * 180.02562 * 14 13 12 16 16 N 1.31773 * 120.98025 * 179.97438 * 15 14 13 17 17 C 1.31964 * 121.97711 * 359.97438 * 16 15 14 18 18 F 1.35103 * 119.62638 * 179.97438 * 17 16 15 19 19 C 1.40002 * 120.74522 * 0.02562 * 17 16 15 20 20 C 1.47575 * 120.52653 * 179.97438 * 19 17 16 21 21 O 1.21493 * 119.99749 * 0.02562 * 20 19 17 22 22 O 1.34722 * 119.99669 * 179.97438 * 20 19 17 23 23 C 1.39436 * 120.43018 * 359.73928 * 14 13 12 24 24 C 1.39168 * 119.18257 * 359.97438 * 13 12 11 25 25 H 0.96997 * 120.00210 * 359.97438 * 1 2 3 26 26 H 1.08001 * 119.66776 * 0.02562 * 10 9 7 27 27 H 1.08006 * 119.41959 * 179.97438 * 12 11 10 28 28 H 1.08003 * 119.50770 * 359.97438 * 15 14 13 29 29 H 0.96707 * 116.99371 * 180.02562 * 22 20 19 30 30 H 1.07996 * 120.89142 * 359.97438 * 23 14 13 31 31 H 1.08000 * 120.94713 * 180.02562 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 -0.0006 5 1 1.8834 2.3965 -1.2124 6 1 1.8834 2.3965 1.2125 7 6 2.0081 -1.2118 -0.0005 8 1 3.0503 -1.2336 0.2816 9 6 1.3504 -2.4080 -0.3706 10 6 1.8279 -3.6558 0.0741 11 7 1.2208 -4.7690 -0.2742 12 6 0.1473 -4.7722 -1.0414 13 6 -0.3992 -3.5811 -1.5243 14 6 -1.6070 -3.6040 -2.3866 15 6 -2.1527 -2.4151 -2.8695 16 7 -3.2244 -2.4228 -3.6362 17 6 -3.8281 -3.5441 -3.9822 18 9 -4.9245 -3.4966 -4.7702 19 6 -3.3459 -4.7822 -3.5409 20 6 -4.0252 -6.0331 -3.9303 21 8 -5.0108 -5.9937 -4.6396 22 8 -3.5517 -7.2187 -3.5000 23 6 -2.2073 -4.8150 -2.7292 24 6 0.2028 -2.3725 -1.1870 25 1 -0.4850 0.8400 0.0004 26 1 2.7041 -3.6993 0.7039 27 1 -0.3165 -5.7124 -1.3010 28 1 -1.6901 -1.4740 -2.6112 29 1 -4.0301 -8.0107 -3.7815 30 1 -1.8055 -5.7528 -2.3751 31 1 -0.1961 -1.4346 -1.5443 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244755155.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:16 Heat of formation + Delta-G solvation = -74.184908 kcal Electronic energy + Delta-G solvation = -21333.474216 eV Core-core repulsion = 17687.005003 eV Total energy + Delta-G solvation = -3646.469213 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.070 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.95683 -40.63153 -39.61657 -38.30776 -36.20487 -34.36619 -33.38799 -32.44281 -30.57821 -28.65305 -26.17436 -25.23806 -23.79852 -22.66464 -21.59971 -20.55356 -18.21422 -18.14072 -17.74952 -16.93421 -16.78274 -16.31544 -15.97671 -15.39536 -15.33058 -14.62994 -14.42662 -14.11536 -13.62584 -13.32600 -13.26052 -13.07673 -12.65288 -12.46771 -11.82213 -11.73523 -11.67907 -11.47850 -11.19576 -10.93581 -10.72457 -10.24738 -10.11756 -9.84171 -9.60717 -9.54988 -8.36756 -8.14512 -7.60172 -7.07663 -4.72419 0.31716 0.88769 2.24493 2.50880 2.72863 2.73285 2.92731 2.96854 3.01372 3.51238 3.69940 3.70958 4.32735 4.38658 4.64716 4.86412 4.96603 5.39768 5.41171 5.53209 5.67989 5.87420 5.98402 6.21317 6.27120 6.46080 6.53739 6.69855 6.85332 6.92617 7.32747 7.52787 7.57721 7.65004 7.70777 8.16225 8.41595 8.45200 9.36038 9.83070 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.022436 B = 0.004442 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.714020 B = 6301.946429 C = 7470.455362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.075 3.925 3 Si 0.913 3.087 4 H -0.258 1.258 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.444 4.444 8 H 0.087 0.913 9 C 0.062 3.938 10 C -0.009 4.009 11 N -0.465 5.465 12 C -0.023 4.023 13 C -0.094 4.094 14 C -0.074 4.074 15 C 0.174 3.826 16 N -0.511 5.511 17 C 0.348 3.652 18 F -0.094 7.094 19 C -0.205 4.205 20 C 0.536 3.464 21 O -0.504 6.504 22 O -0.507 6.507 23 C 0.002 3.998 24 C -0.115 4.115 25 H 0.287 0.713 26 H 0.130 0.870 27 H 0.124 0.876 28 H 0.183 0.817 29 H 0.416 0.584 30 H 0.162 0.838 31 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.866 -4.859 -4.445 7.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.145 4.145 3 Si 0.737 3.263 4 H -0.181 1.181 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.473 4.473 8 H 0.105 0.895 9 C 0.057 3.943 10 C -0.170 4.170 11 N -0.172 5.172 12 C -0.181 4.181 13 C -0.097 4.097 14 C -0.077 4.077 15 C 0.017 3.983 16 N -0.224 5.224 17 C 0.193 3.807 18 F -0.073 7.073 19 C -0.210 4.210 20 C 0.379 3.621 21 O -0.393 6.393 22 O -0.319 6.319 23 C -0.023 4.023 24 C -0.140 4.140 25 H 0.098 0.902 26 H 0.148 0.852 27 H 0.141 0.859 28 H 0.200 0.800 29 H 0.275 0.725 30 H 0.180 0.820 31 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.205 -4.355 -4.548 7.572 hybrid contribution -0.325 0.406 -0.273 0.588 sum -4.530 -3.948 -4.822 7.705 Atomic orbital electron populations 1.69749 1.07761 1.30048 1.33694 1.25997 0.94838 1.01833 0.91788 0.86157 0.81022 0.80211 0.78923 1.18107 1.19380 1.19693 1.19646 0.98365 0.90686 1.38606 0.89468 1.18456 0.91949 0.93880 0.89986 1.22630 1.02397 0.87910 1.04086 1.66971 1.07653 1.31970 1.10611 1.21734 0.97132 0.95081 1.04134 1.19142 0.94467 0.96149 0.99969 1.19990 0.96923 0.92732 0.98053 1.23202 0.87736 0.99541 0.87772 1.67209 1.11204 1.28190 1.15830 1.18106 0.84562 0.88405 0.89593 1.91692 1.48807 1.96804 1.70016 1.19665 1.01871 0.90501 1.08997 1.20344 0.81398 0.83653 0.76693 1.90947 1.25424 1.87724 1.35180 1.84562 1.58911 1.16732 1.71673 1.21970 0.90134 0.99924 0.90249 1.21801 0.97962 0.95731 0.98521 0.90208 0.85235 0.85894 0.80049 0.72520 0.82039 0.84838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -17.67 10.92 55.55 0.61 -17.06 16 2 C 0.07 1.64 5.18 -17.34 -0.09 1.55 16 3 Si 0.91 16.51 29.59 -169.99 -5.03 11.48 16 4 H -0.26 -4.64 7.11 56.52 0.40 -4.23 16 5 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 6 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 7 C -0.44 -10.26 9.08 -37.73 -0.34 -10.60 16 8 H 0.09 1.92 7.90 -52.49 -0.41 1.51 16 9 C 0.06 1.45 5.59 -106.71 -0.60 0.85 16 10 C -0.01 -0.20 10.96 -16.73 -0.18 -0.38 16 11 N -0.47 -10.36 10.32 -12.28 -0.13 -10.49 16 12 C -0.02 -0.47 10.61 -16.97 -0.18 -0.65 16 13 C -0.09 -1.88 5.88 -104.82 -0.62 -2.50 16 14 C -0.07 -1.26 5.89 -104.80 -0.62 -1.88 16 15 C 0.17 2.92 10.60 -17.13 -0.18 2.74 16 16 N -0.51 -8.74 10.34 -12.94 -0.13 -8.87 16 17 C 0.35 5.76 8.41 -16.83 -0.14 5.62 16 18 F -0.09 -1.61 15.57 2.25 0.04 -1.58 16 19 C -0.21 -3.08 5.89 -104.82 -0.62 -3.70 16 20 C 0.54 7.34 8.27 34.54 0.29 7.62 16 21 O -0.50 -8.10 16.14 -19.26 -0.31 -8.41 16 22 O -0.51 -5.06 12.75 -40.55 -0.52 -5.57 16 23 C 0.00 0.03 9.10 -38.52 -0.35 -0.32 16 24 C -0.12 -2.55 8.18 -38.24 -0.31 -2.86 16 25 H 0.29 5.83 8.30 -40.82 -0.34 5.50 16 26 H 0.13 2.71 8.06 -52.49 -0.42 2.29 16 27 H 0.12 2.12 6.26 -52.48 -0.33 1.79 16 28 H 0.18 2.96 6.26 -52.48 -0.33 2.63 16 29 H 0.42 2.06 9.11 45.56 0.42 2.48 16 30 H 0.16 2.10 5.96 -52.49 -0.31 1.78 16 31 H 0.13 2.92 4.45 -52.49 -0.23 2.69 16 LS Contribution 286.90 15.07 4.32 4.32 Total: -1.00 -27.33 286.90 -5.86 -33.19 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -0.76 Total: 7.51 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -3.94 Total: -4.51 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.35 Total: -36.42 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.83 Total: -13.98 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 16.51 SS G_CDS: -5.03 Total: 11.48 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -27.33 -5.86 -33.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244755155.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.998 kcal (2) G-P(sol) polarization free energy of solvation -27.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds