Wall clock time and date at job start Tue Mar 31 2020 05:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86803 * 119.99675 * 2 1 4 4 H 1.48497 * 109.47029 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47233 * 300.00334 * 3 2 1 6 6 H 1.48498 * 109.47027 * 59.99987 * 3 2 1 7 7 C 1.39930 * 120.00427 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00007 * 197.55713 * 7 2 1 9 9 C 1.41437 * 119.99975 * 17.56067 * 7 2 1 10 10 C 1.40810 * 120.60853 * 203.74466 * 9 7 2 11 11 N 1.31491 * 120.66389 * 180.30425 * 10 9 7 12 12 C 1.31945 * 122.11810 * 359.71707 * 11 10 9 13 13 C 1.39656 * 121.15390 * 0.02562 * 12 11 10 14 14 C 1.48429 * 120.40699 * 179.97438 * 13 12 11 15 15 C 1.39444 * 120.42838 * 180.02562 * 14 13 12 16 16 N 1.31773 * 120.98025 * 179.97438 * 15 14 13 17 17 C 1.31964 * 121.97711 * 359.97438 * 16 15 14 18 18 F 1.35103 * 119.62638 * 179.97438 * 17 16 15 19 19 C 1.40002 * 120.74522 * 0.02562 * 17 16 15 20 20 C 1.47575 * 120.52653 * 179.97438 * 19 17 16 21 21 O 1.21493 * 119.99749 * 0.02562 * 20 19 17 22 22 O 1.34722 * 119.99669 * 179.97438 * 20 19 17 23 23 C 1.39436 * 120.43018 * 359.73928 * 14 13 12 24 24 C 1.39168 * 119.18257 * 359.97438 * 13 12 11 25 25 H 0.96997 * 120.00210 * 359.97438 * 1 2 3 26 26 H 1.08001 * 119.66776 * 0.02562 * 10 9 7 27 27 H 1.08006 * 119.41959 * 179.97438 * 12 11 10 28 28 H 1.08003 * 119.50770 * 359.97438 * 15 14 13 29 29 H 0.96707 * 116.99371 * 180.02562 * 22 20 19 30 30 H 1.07996 * 120.89142 * 359.97438 * 23 14 13 31 31 H 1.08000 * 120.94713 * 180.02562 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 -0.0006 5 1 1.8834 2.3965 -1.2124 6 1 1.8834 2.3965 1.2125 7 6 2.0081 -1.2118 -0.0005 8 1 3.0503 -1.2336 0.2816 9 6 1.3504 -2.4080 -0.3706 10 6 1.8279 -3.6558 0.0741 11 7 1.2208 -4.7690 -0.2742 12 6 0.1473 -4.7722 -1.0414 13 6 -0.3992 -3.5811 -1.5243 14 6 -1.6070 -3.6040 -2.3866 15 6 -2.1527 -2.4151 -2.8695 16 7 -3.2244 -2.4228 -3.6362 17 6 -3.8281 -3.5441 -3.9822 18 9 -4.9245 -3.4966 -4.7702 19 6 -3.3459 -4.7822 -3.5409 20 6 -4.0252 -6.0331 -3.9303 21 8 -5.0108 -5.9937 -4.6396 22 8 -3.5517 -7.2187 -3.5000 23 6 -2.2073 -4.8150 -2.7292 24 6 0.2028 -2.3725 -1.1870 25 1 -0.4850 0.8400 0.0004 26 1 2.7041 -3.6993 0.7039 27 1 -0.3165 -5.7124 -1.3010 28 1 -1.6901 -1.4740 -2.6112 29 1 -4.0301 -8.0107 -3.7815 30 1 -1.8055 -5.7528 -2.3751 31 1 -0.1961 -1.4346 -1.5443 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244755155.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:15 Heat of formation + Delta-G solvation = -90.949179 kcal Electronic energy + Delta-G solvation = -21334.201169 eV Core-core repulsion = 17687.005003 eV Total energy + Delta-G solvation = -3647.196166 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.070 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.27849 -41.84446 -40.82416 -39.87792 -37.17530 -36.01398 -34.80872 -33.77383 -32.25127 -30.13824 -27.75914 -26.57332 -25.14966 -24.06127 -23.13088 -21.96552 -19.45571 -19.29557 -19.25716 -18.26088 -18.02125 -17.56529 -17.55868 -16.87533 -16.50113 -16.17333 -15.93878 -15.37941 -14.88644 -14.74455 -14.65465 -14.39626 -14.06780 -13.95531 -13.40921 -13.23157 -13.14087 -12.69489 -12.68539 -12.24098 -12.08456 -11.69616 -11.58994 -11.24824 -11.10016 -10.94324 -10.04596 -9.82267 -9.15669 -8.70821 -6.45660 -0.94943 -0.42138 0.79030 0.99491 1.36133 1.43906 1.52971 1.57695 1.71890 2.19788 2.24262 2.36476 2.75249 3.05123 3.36253 3.60001 3.70198 3.74281 4.08342 4.24794 4.31507 4.47810 4.59250 4.72723 4.83142 5.09386 5.13719 5.23685 5.28639 5.42843 5.69381 5.88244 5.95705 6.25457 6.46645 6.72527 6.75827 6.85108 7.67117 8.21922 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.022436 B = 0.004442 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.714020 B = 6301.946429 C = 7470.455362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.042 3.958 3 Si 0.980 3.020 4 H -0.257 1.257 5 H -0.264 1.264 6 H -0.268 1.268 7 C -0.475 4.475 8 H 0.087 0.913 9 C 0.038 3.962 10 C -0.030 4.030 11 N -0.478 5.478 12 C -0.025 4.025 13 C -0.086 4.086 14 C -0.087 4.087 15 C 0.175 3.825 16 N -0.525 5.525 17 C 0.342 3.658 18 F -0.099 7.099 19 C -0.201 4.201 20 C 0.547 3.453 21 O -0.530 6.530 22 O -0.492 6.492 23 C 0.025 3.975 24 C -0.133 4.133 25 H 0.294 0.706 26 H 0.136 0.864 27 H 0.159 0.841 28 H 0.180 0.820 29 H 0.441 0.559 30 H 0.188 0.812 31 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.343 -5.862 -4.900 8.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.175 4.175 3 Si 0.801 3.199 4 H -0.181 1.181 5 H -0.189 1.189 6 H -0.193 1.193 7 C -0.504 4.504 8 H 0.105 0.895 9 C 0.034 3.966 10 C -0.191 4.191 11 N -0.185 5.185 12 C -0.183 4.183 13 C -0.089 4.089 14 C -0.090 4.090 15 C 0.019 3.981 16 N -0.238 5.238 17 C 0.188 3.812 18 F -0.078 7.078 19 C -0.206 4.206 20 C 0.390 3.610 21 O -0.421 6.421 22 O -0.306 6.306 23 C 0.001 3.999 24 C -0.159 4.159 25 H 0.105 0.895 26 H 0.153 0.847 27 H 0.176 0.824 28 H 0.196 0.804 29 H 0.304 0.696 30 H 0.205 0.795 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.674 -5.397 -4.993 8.713 hybrid contribution -0.290 0.561 -0.185 0.658 sum -4.964 -4.835 -5.178 8.651 Atomic orbital electron populations 1.69775 1.08853 1.31219 1.34027 1.26696 0.95475 1.04357 0.90943 0.85164 0.79608 0.76195 0.78946 1.18059 1.18871 1.19326 1.19869 0.98657 0.91652 1.40237 0.89536 1.18750 0.92810 0.94412 0.90658 1.22763 1.03188 0.88076 1.05032 1.67006 1.08464 1.31744 1.11253 1.22338 0.96418 0.96563 1.02940 1.19277 0.94861 0.95349 0.99382 1.19803 0.96574 0.93820 0.98792 1.23131 0.87639 0.99623 0.87665 1.67174 1.11468 1.28904 1.16304 1.18318 0.84413 0.89019 0.89492 1.91682 1.49066 1.96859 1.70179 1.19738 1.01662 0.90846 1.08360 1.19994 0.80664 0.84172 0.76121 1.90954 1.26553 1.88192 1.36437 1.84498 1.58706 1.16581 1.70831 1.22135 0.89152 0.99892 0.88729 1.21879 0.98265 0.96637 0.99116 0.89483 0.84679 0.82371 0.80353 0.69604 0.79515 0.85208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -36.95 10.92 21.82 0.24 -36.71 16 2 C 0.04 1.87 5.18 85.25 0.44 2.31 16 3 Si 0.98 33.82 29.59 68.60 2.03 35.85 16 4 H -0.26 -8.75 7.11 99.48 0.71 -8.05 16 5 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 6 H -0.27 -9.05 7.11 99.48 0.71 -8.34 16 7 C -0.48 -22.51 9.08 23.47 0.21 -22.30 16 8 H 0.09 3.94 7.90 -2.91 -0.02 3.91 16 9 C 0.04 1.82 5.59 -21.22 -0.12 1.70 16 10 C -0.03 -1.39 10.96 85.37 0.94 -0.45 16 11 N -0.48 -20.93 10.32 -192.78 -1.99 -22.92 16 12 C -0.02 -0.95 10.61 85.02 0.90 -0.05 16 13 C -0.09 -3.35 5.88 -20.00 -0.12 -3.47 16 14 C -0.09 -2.82 5.89 -19.98 -0.12 -2.94 16 15 C 0.18 5.79 10.60 84.99 0.90 6.69 16 16 N -0.52 -17.54 10.34 -194.84 -2.02 -19.55 16 17 C 0.34 10.85 8.41 85.10 0.72 11.56 16 18 F -0.10 -3.27 15.57 44.97 0.70 -2.57 16 19 C -0.20 -5.52 5.89 -19.99 -0.12 -5.63 16 20 C 0.55 13.28 8.27 70.29 0.58 13.86 16 21 O -0.53 -15.82 16.14 19.86 0.32 -15.50 16 22 O -0.49 -7.70 12.75 -56.32 -0.72 -8.42 16 23 C 0.03 0.68 9.10 22.95 0.21 0.88 16 24 C -0.13 -5.98 8.18 23.14 0.19 -5.80 16 25 H 0.29 12.04 8.30 -92.71 -0.77 11.27 16 26 H 0.14 5.81 8.06 -2.91 -0.02 5.79 16 27 H 0.16 4.85 6.26 -2.91 -0.02 4.83 16 28 H 0.18 5.93 6.26 -2.91 -0.02 5.91 16 29 H 0.44 2.43 9.11 -74.05 -0.67 1.76 16 30 H 0.19 3.98 5.96 -2.91 -0.02 3.96 16 31 H 0.13 5.82 4.45 -2.91 -0.01 5.81 16 Total: -1.00 -58.48 286.90 3.75 -54.74 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 0.56 Total: 18.72 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: 4.62 Total: -3.63 kcal Atomic # 7 Polarization: -75.41 SS G_CDS: -3.77 Total: -79.18 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.40 Total: -23.92 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.70 Total: -2.57 kcal Atomic # 14 Polarization: 33.82 SS G_CDS: 2.03 Total: 35.85 kcal Total: -58.48 3.75 -54.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244755155.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.213 kcal (2) G-P(sol) polarization free energy of solvation -58.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds