Wall clock time and date at job start Tue Mar 31 2020 05:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30698 * 1 3 3 Si 1.86796 * 119.99881 * 2 1 4 4 H 1.48501 * 109.46914 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47548 * 299.99993 * 3 2 1 6 6 H 1.48499 * 109.47034 * 60.00341 * 3 2 1 7 7 C 1.40148 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99637 * 179.97438 * 7 2 1 9 9 C 1.40800 * 120.00391 * 0.02562 * 7 2 1 10 10 N 1.33702 * 119.93791 * 359.97438 * 9 7 2 11 11 C 1.31284 * 121.63472 * 179.97438 * 10 9 7 12 12 C 1.39059 * 121.34222 * 359.97438 * 11 10 9 13 13 C 1.38389 * 119.72722 * 0.02562 * 12 11 10 14 14 C 1.39684 * 118.47364 * 0.02562 * 13 12 11 15 15 C 1.47818 * 120.65092 * 180.02562 * 14 13 12 16 16 C 1.39814 * 120.45994 * 129.69661 * 15 14 13 17 17 N 1.31692 * 120.92013 * 179.72557 * 16 15 14 18 18 C 1.32029 * 122.02118 * 0.59234 * 17 16 15 19 19 F 1.35102 * 119.58767 * 179.69814 * 18 17 16 20 20 C 1.40090 * 120.81328 * 359.67328 * 18 17 16 21 21 C 1.47584 * 120.50633 * 180.02562 * 20 18 17 22 22 O 1.21490 * 119.99584 * 359.97438 * 21 20 18 23 23 O 1.34720 * 120.00099 * 179.97438 * 21 20 18 24 24 C 1.39749 * 118.98926 * 0.02657 * 20 18 17 25 25 H 0.97002 * 120.00063 * 0.02562 * 1 2 3 26 26 H 1.08002 * 119.32462 * 179.72639 * 11 10 9 27 27 H 1.07996 * 120.13995 * 179.97438 * 12 11 10 28 28 H 1.07991 * 120.76195 * 179.97438 * 13 12 11 29 29 H 1.08002 * 119.53982 * 0.02562 * 16 15 14 30 30 H 0.96701 * 117.00011 * 180.02562 * 23 21 20 31 31 H 1.08002 * 120.91340 * 179.97438 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.7009 1.3463 0.0006 5 1 1.8823 2.3965 -1.2124 6 1 1.8822 2.3964 1.2125 7 6 2.0077 -1.2138 -0.0005 8 1 3.0877 -1.2137 -0.0010 9 6 1.3037 -2.4331 -0.0016 10 7 -0.0333 -2.4317 -0.0016 11 6 -0.7231 -3.5487 -0.0031 12 6 -0.0926 -4.7882 -0.0053 13 6 1.2896 -4.8549 -0.0054 14 6 2.0140 -3.6606 -0.0027 15 6 3.4922 -3.6758 -0.0033 16 6 4.2085 -2.9111 -0.9289 17 7 5.5254 -2.9137 -0.9341 18 6 6.2273 -3.6389 -0.0830 19 9 7.5770 -3.6092 -0.1360 20 6 5.5899 -4.4384 0.8746 21 6 6.3813 -5.2460 1.8231 22 8 7.5950 -5.2210 1.7768 23 8 5.7578 -6.0109 2.7403 24 6 4.1933 -4.4596 0.9181 25 1 -0.4850 0.8401 -0.0004 26 1 -1.8022 -3.5040 0.0014 27 1 -0.6792 -5.6949 -0.0061 28 1 1.7966 -5.8085 -0.0067 29 1 3.6744 -2.3061 -1.6467 30 1 6.3183 -6.5218 3.3401 31 1 3.6698 -5.0651 1.6433 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244755252.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:01 Heat of formation + Delta-G solvation = -63.958784 kcal Electronic energy + Delta-G solvation = -21733.129899 eV Core-core repulsion = 18087.104124 eV Total energy + Delta-G solvation = -3646.025775 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.070 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.72928 -40.41321 -39.41977 -38.09805 -36.07618 -33.96013 -33.13018 -32.13528 -30.57294 -28.71120 -26.16817 -24.93689 -23.69337 -22.27598 -21.57931 -20.41021 -18.12757 -17.95081 -17.62229 -17.03771 -16.70594 -16.12798 -15.66469 -15.22670 -14.98291 -14.47284 -14.39268 -14.02288 -13.43392 -13.09883 -12.91568 -12.76636 -12.53074 -12.31442 -12.00998 -11.61993 -11.41610 -11.38380 -11.19262 -10.80199 -10.56840 -10.19883 -9.89519 -9.65689 -9.53677 -8.96129 -8.31137 -7.86739 -7.63518 -6.70174 -4.83086 0.57807 1.25766 2.41686 2.59794 2.77497 2.90359 2.97391 3.02176 3.04076 3.75356 3.77195 3.89592 4.47861 4.60582 4.93455 5.17186 5.23532 5.57038 5.75405 5.83194 5.86699 5.99556 6.12401 6.30346 6.37501 6.41257 6.60834 6.77602 6.83003 7.02919 7.26330 7.43867 7.71778 7.83235 7.85531 7.91928 8.33270 8.59706 9.79947 9.99339 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.015366 B = 0.006035 C = 0.004738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.715744 B = 4638.243852 C = 5908.727669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.699 5.699 2 C 0.069 3.931 3 Si 0.903 3.097 4 H -0.256 1.256 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.418 4.418 8 H 0.090 0.910 9 C 0.270 3.730 10 N -0.478 5.478 11 C 0.141 3.859 12 C -0.317 4.317 13 C -0.023 4.023 14 C -0.249 4.249 15 C -0.037 4.037 16 C 0.174 3.826 17 N -0.514 5.514 18 C 0.335 3.665 19 F -0.100 7.100 20 C -0.206 4.206 21 C 0.535 3.465 22 O -0.507 6.507 23 O -0.509 6.509 24 C -0.012 4.012 25 H 0.278 0.722 26 H 0.122 0.878 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.182 0.818 30 H 0.413 0.587 31 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.010 -5.905 2.120 7.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.318 5.318 2 C -0.159 4.159 3 Si 0.726 3.274 4 H -0.179 1.179 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.447 4.447 8 H 0.108 0.892 9 C 0.147 3.853 10 N -0.189 5.189 11 C -0.029 4.029 12 C -0.340 4.340 13 C -0.048 4.048 14 C -0.254 4.254 15 C -0.040 4.040 16 C 0.017 3.983 17 N -0.228 5.228 18 C 0.181 3.819 19 F -0.078 7.078 20 C -0.211 4.211 21 C 0.379 3.621 22 O -0.396 6.396 23 O -0.320 6.320 24 C -0.037 4.037 25 H 0.089 0.911 26 H 0.140 0.860 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.199 0.801 30 H 0.272 0.728 31 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 4.029 -4.160 1.245 5.924 hybrid contribution 0.903 -0.968 1.050 1.689 sum 4.932 -5.128 2.295 7.476 Atomic orbital electron populations 1.70091 1.07342 1.28486 1.25912 1.26129 0.94952 1.01405 0.93428 0.86300 0.81222 0.80823 0.79037 1.17911 1.19310 1.19489 1.19813 0.94692 0.89461 1.40734 0.89199 1.18482 0.88102 0.90642 0.88031 1.68804 1.06812 1.26636 1.16660 1.22694 0.99045 0.88766 0.92410 1.21263 0.94477 0.98079 1.20216 1.20891 0.93899 0.95522 0.94442 1.18989 0.88963 0.94957 1.22510 1.19719 0.95165 0.95195 0.93945 1.23317 0.86242 0.93534 0.95193 1.67159 1.10117 1.21233 1.24278 1.18074 0.78826 0.93072 0.91948 1.91664 1.26691 1.94388 1.95092 1.19621 0.94748 1.05655 1.01059 1.20466 0.85687 0.77042 0.78906 1.90930 1.14785 1.63408 1.70516 1.84573 1.45065 1.57155 1.45225 1.22014 0.90525 0.95385 0.95806 0.91058 0.86018 0.88298 0.88256 0.80148 0.72829 0.82942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -16.82 11.46 55.56 0.64 -16.18 16 2 C 0.07 1.58 5.50 -17.32 -0.10 1.49 16 3 Si 0.90 17.25 29.56 -169.99 -5.03 12.23 16 4 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 5 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 6 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 7 C -0.42 -9.83 7.98 -37.90 -0.30 -10.13 16 8 H 0.09 2.01 5.25 -52.48 -0.28 1.73 16 9 C 0.27 6.45 6.56 -84.71 -0.56 5.89 16 10 N -0.48 -11.74 7.85 -10.91 -0.09 -11.83 16 11 C 0.14 3.01 11.17 -17.48 -0.20 2.81 16 12 C -0.32 -6.18 10.10 -39.22 -0.40 -6.57 16 13 C -0.02 -0.44 9.68 -38.99 -0.38 -0.82 16 14 C -0.25 -5.18 5.55 -104.07 -0.58 -5.76 16 15 C -0.04 -0.69 5.02 -104.80 -0.53 -1.22 16 16 C 0.17 3.20 8.74 -17.02 -0.15 3.05 16 17 N -0.51 -9.61 10.34 -12.82 -0.13 -9.74 16 18 C 0.33 6.09 8.41 -16.77 -0.14 5.95 16 19 F -0.10 -1.85 15.57 2.25 0.04 -1.81 16 20 C -0.21 -3.42 5.89 -104.83 -0.62 -4.04 16 21 C 0.54 8.11 8.27 34.54 0.29 8.39 16 22 O -0.51 -8.84 16.14 -19.26 -0.31 -9.15 16 23 O -0.51 -5.75 12.75 -40.55 -0.52 -6.27 16 24 C -0.01 -0.20 9.26 -38.43 -0.36 -0.56 16 25 H 0.28 6.04 8.29 -40.82 -0.34 5.70 16 26 H 0.12 2.29 8.06 -52.49 -0.42 1.86 16 27 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 28 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 29 H 0.18 3.24 7.25 -52.49 -0.38 2.86 16 30 H 0.41 2.55 9.11 45.56 0.42 2.96 16 31 H 0.15 2.26 7.69 -52.49 -0.40 1.86 16 LS Contribution 288.89 15.07 4.35 4.35 Total: -1.00 -28.28 288.89 -6.10 -34.37 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -1.05 Total: 5.55 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -4.00 Total: -1.51 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.42 Total: -37.76 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.83 Total: -15.42 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 17.25 SS G_CDS: -5.03 Total: 12.23 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.28 -6.10 -34.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244755252.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.587 kcal (2) G-P(sol) polarization free energy of solvation -28.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds