Wall clock time and date at job start Tue Mar 31 2020 05:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30698 * 1 3 3 Si 1.86796 * 119.99881 * 2 1 4 4 H 1.48501 * 109.46914 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47548 * 299.99993 * 3 2 1 6 6 H 1.48499 * 109.47034 * 60.00341 * 3 2 1 7 7 C 1.40148 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99637 * 179.97438 * 7 2 1 9 9 C 1.40800 * 120.00391 * 0.02562 * 7 2 1 10 10 N 1.33702 * 119.93791 * 359.97438 * 9 7 2 11 11 C 1.31284 * 121.63472 * 179.97438 * 10 9 7 12 12 C 1.39059 * 121.34222 * 359.97438 * 11 10 9 13 13 C 1.38389 * 119.72722 * 0.02562 * 12 11 10 14 14 C 1.39684 * 118.47364 * 0.02562 * 13 12 11 15 15 C 1.47818 * 120.65092 * 180.02562 * 14 13 12 16 16 C 1.39814 * 120.45994 * 129.69661 * 15 14 13 17 17 N 1.31692 * 120.92013 * 179.72557 * 16 15 14 18 18 C 1.32029 * 122.02118 * 0.59234 * 17 16 15 19 19 F 1.35102 * 119.58767 * 179.69814 * 18 17 16 20 20 C 1.40090 * 120.81328 * 359.67328 * 18 17 16 21 21 C 1.47584 * 120.50633 * 180.02562 * 20 18 17 22 22 O 1.21490 * 119.99584 * 359.97438 * 21 20 18 23 23 O 1.34720 * 120.00099 * 179.97438 * 21 20 18 24 24 C 1.39749 * 118.98926 * 0.02657 * 20 18 17 25 25 H 0.97002 * 120.00063 * 0.02562 * 1 2 3 26 26 H 1.08002 * 119.32462 * 179.72639 * 11 10 9 27 27 H 1.07996 * 120.13995 * 179.97438 * 12 11 10 28 28 H 1.07991 * 120.76195 * 179.97438 * 13 12 11 29 29 H 1.08002 * 119.53982 * 0.02562 * 16 15 14 30 30 H 0.96701 * 117.00011 * 180.02562 * 23 21 20 31 31 H 1.08002 * 120.91340 * 179.97438 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.7009 1.3463 0.0006 5 1 1.8823 2.3965 -1.2124 6 1 1.8822 2.3964 1.2125 7 6 2.0077 -1.2138 -0.0005 8 1 3.0877 -1.2137 -0.0010 9 6 1.3037 -2.4331 -0.0016 10 7 -0.0333 -2.4317 -0.0016 11 6 -0.7231 -3.5487 -0.0031 12 6 -0.0926 -4.7882 -0.0053 13 6 1.2896 -4.8549 -0.0054 14 6 2.0140 -3.6606 -0.0027 15 6 3.4922 -3.6758 -0.0033 16 6 4.2085 -2.9111 -0.9289 17 7 5.5254 -2.9137 -0.9341 18 6 6.2273 -3.6389 -0.0830 19 9 7.5770 -3.6092 -0.1360 20 6 5.5899 -4.4384 0.8746 21 6 6.3813 -5.2460 1.8231 22 8 7.5950 -5.2210 1.7768 23 8 5.7578 -6.0109 2.7403 24 6 4.1933 -4.4596 0.9181 25 1 -0.4850 0.8401 -0.0004 26 1 -1.8022 -3.5040 0.0014 27 1 -0.6792 -5.6949 -0.0061 28 1 1.7966 -5.8085 -0.0067 29 1 3.6744 -2.3061 -1.6467 30 1 6.3183 -6.5218 3.3401 31 1 3.6698 -5.0651 1.6433 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244755252.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:00 Heat of formation + Delta-G solvation = -81.426185 kcal Electronic energy + Delta-G solvation = -21733.887342 eV Core-core repulsion = 18087.104124 eV Total energy + Delta-G solvation = -3646.783219 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.070 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.16523 -41.70783 -40.74180 -39.67084 -37.15780 -35.61135 -34.61123 -33.55823 -32.19972 -30.25296 -27.78839 -26.29349 -25.13389 -23.64061 -23.21193 -21.83530 -19.53455 -19.27620 -19.11583 -18.33242 -18.08635 -17.49393 -17.22757 -16.45909 -16.43791 -16.06371 -15.98014 -15.32975 -14.82195 -14.57731 -14.34331 -14.13316 -14.00478 -13.94232 -13.50270 -12.97888 -12.91741 -12.77117 -12.67645 -12.27665 -11.96267 -11.75422 -11.31024 -11.26815 -10.95988 -10.46510 -9.90401 -9.52234 -9.23917 -8.35658 -6.53825 -0.77672 -0.15053 0.85798 1.12804 1.38888 1.40588 1.51184 1.52436 1.78548 2.17936 2.38400 2.48859 2.81557 3.22802 3.57408 3.78932 3.87004 4.06346 4.27658 4.38092 4.47675 4.59188 4.65708 4.81864 4.92116 5.08344 5.16697 5.35112 5.43789 5.47138 5.66650 5.86224 6.10613 6.25845 6.42094 6.67671 6.86963 6.91482 8.15692 8.36427 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.015366 B = 0.006035 C = 0.004738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.715744 B = 4638.243852 C = 5908.727669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.740 5.740 2 C 0.034 3.966 3 Si 0.966 3.034 4 H -0.260 1.260 5 H -0.263 1.263 6 H -0.267 1.267 7 C -0.449 4.449 8 H 0.092 0.908 9 C 0.244 3.756 10 N -0.518 5.518 11 C 0.118 3.882 12 C -0.307 4.307 13 C -0.027 4.027 14 C -0.247 4.247 15 C -0.049 4.049 16 C 0.172 3.828 17 N -0.527 5.527 18 C 0.326 3.674 19 F -0.104 7.104 20 C -0.202 4.202 21 C 0.546 3.454 22 O -0.532 6.532 23 O -0.493 6.493 24 C 0.008 3.992 25 H 0.282 0.718 26 H 0.139 0.861 27 H 0.131 0.869 28 H 0.134 0.866 29 H 0.177 0.823 30 H 0.439 0.561 31 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.616 -7.600 2.993 9.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.361 5.361 2 C -0.190 4.190 3 Si 0.787 3.213 4 H -0.183 1.183 5 H -0.187 1.187 6 H -0.192 1.192 7 C -0.478 4.478 8 H 0.110 0.890 9 C 0.121 3.879 10 N -0.230 5.230 11 C -0.049 4.049 12 C -0.329 4.329 13 C -0.052 4.052 14 C -0.252 4.252 15 C -0.052 4.052 16 C 0.015 3.985 17 N -0.241 5.241 18 C 0.172 3.828 19 F -0.083 7.083 20 C -0.207 4.207 21 C 0.390 3.610 22 O -0.424 6.424 23 O -0.308 6.308 24 C -0.017 4.017 25 H 0.093 0.907 26 H 0.156 0.844 27 H 0.149 0.851 28 H 0.152 0.848 29 H 0.194 0.806 30 H 0.302 0.698 31 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 4.611 -5.899 2.136 7.786 hybrid contribution 0.729 -0.667 0.821 1.284 sum 5.339 -6.566 2.957 8.965 Atomic orbital electron populations 1.70166 1.08599 1.29324 1.27983 1.26818 0.95517 1.04014 0.92701 0.85372 0.79539 0.77278 0.79091 1.18328 1.18729 1.19199 1.20006 0.94921 0.90194 1.42729 0.88970 1.18843 0.88415 0.92029 0.88626 1.68734 1.07613 1.28491 1.18191 1.23110 1.00029 0.89125 0.92658 1.21620 0.95022 0.98444 1.17817 1.21290 0.94001 0.96378 0.93482 1.19153 0.90093 0.94653 1.21299 1.19646 0.94246 0.96306 0.94980 1.23232 0.86161 0.93576 0.95487 1.67110 1.10198 1.21856 1.24950 1.18285 0.78723 0.93422 0.92372 1.91652 1.27034 1.94456 1.95156 1.19710 0.94860 1.05267 1.00869 1.20092 0.84931 0.76946 0.79011 1.90935 1.15780 1.64338 1.71321 1.84506 1.45116 1.56481 1.44650 1.22154 0.90299 0.94206 0.95027 0.90721 0.84405 0.85104 0.84805 0.80577 0.69838 0.80606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -36.73 11.46 21.86 0.25 -36.48 16 2 C 0.03 1.58 5.50 85.33 0.47 2.05 16 3 Si 0.97 36.16 29.56 68.60 2.03 38.19 16 4 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 5 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 6 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 7 C -0.45 -21.58 7.98 23.36 0.19 -21.39 16 8 H 0.09 4.21 5.25 -2.91 -0.02 4.19 16 9 C 0.24 11.79 6.56 40.37 0.26 12.06 16 10 N -0.52 -25.83 7.85 -188.43 -1.48 -27.31 16 11 C 0.12 4.98 11.17 84.97 0.95 5.92 16 12 C -0.31 -11.15 10.10 22.50 0.23 -10.93 16 13 C -0.03 -0.97 9.68 22.66 0.22 -0.75 16 14 C -0.25 -10.01 5.55 -19.51 -0.11 -10.12 16 15 C -0.05 -1.75 5.02 -19.98 -0.10 -1.85 16 16 C 0.17 6.27 8.74 85.10 0.74 7.01 16 17 N -0.53 -19.44 10.34 -194.48 -2.01 -21.45 16 18 C 0.33 11.48 8.41 85.11 0.72 12.20 16 19 F -0.10 -3.77 15.57 44.97 0.70 -3.07 16 20 C -0.20 -6.25 5.89 -20.00 -0.12 -6.37 16 21 C 0.55 14.93 8.27 70.29 0.58 15.52 16 22 O -0.53 -17.36 16.14 19.87 0.32 -17.04 16 23 O -0.49 -9.11 12.75 -56.30 -0.72 -9.83 16 24 C 0.01 0.24 9.26 23.02 0.21 0.45 16 25 H 0.28 12.67 8.29 -92.71 -0.77 11.90 16 26 H 0.14 5.11 8.06 -2.91 -0.02 5.09 16 27 H 0.13 3.88 8.06 -2.91 -0.02 3.86 16 28 H 0.13 3.82 8.06 -2.92 -0.02 3.80 16 29 H 0.18 6.49 7.25 -2.91 -0.02 6.47 16 30 H 0.44 3.49 9.11 -74.06 -0.67 2.82 16 31 H 0.18 4.48 7.69 -2.91 -0.02 4.45 16 Total: -1.00 -61.32 288.89 3.88 -57.44 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.55 Total: 15.75 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 4.24 Total: 3.81 kcal Atomic # 7 Polarization: -82.00 SS G_CDS: -3.24 Total: -85.24 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -0.40 Total: -26.87 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.70 Total: -3.07 kcal Atomic # 14 Polarization: 36.16 SS G_CDS: 2.03 Total: 38.19 kcal Total: -61.32 3.88 -57.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244755252.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.990 kcal (2) G-P(sol) polarization free energy of solvation -61.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds