Wall clock time and date at job start Tue Mar 31 2020 05:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86806 * 119.99721 * 2 1 4 4 H 1.48503 * 109.46705 * 90.00661 * 3 2 1 5 5 H 1.48497 * 109.47075 * 210.00109 * 3 2 1 6 6 H 1.48490 * 109.47240 * 330.00934 * 3 2 1 7 7 C 1.40019 * 120.00145 * 179.73378 * 2 1 3 8 8 H 1.08000 * 119.99561 * 152.24082 * 7 2 1 9 9 C 1.41371 * 119.99937 * 332.23589 * 7 2 1 10 10 C 1.40714 * 119.76540 * 168.81705 * 9 7 2 11 11 C 1.38264 * 119.18846 * 179.72876 * 10 9 7 12 12 C 1.38716 * 118.68877 * 0.53641 * 11 10 9 13 13 C 1.39889 * 119.46524 * 359.72742 * 12 11 10 14 14 C 1.48274 * 119.60715 * 180.02562 * 13 12 11 15 15 C 1.39398 * 120.48171 * 314.71975 * 14 13 12 16 16 C 1.39935 * 118.19989 * 179.97438 * 15 14 13 17 17 C 1.47618 * 120.47174 * 179.97438 * 16 15 14 18 18 O 1.21485 * 120.00326 * 0.02562 * 17 16 15 19 19 O 1.34722 * 120.00208 * 180.02562 * 17 16 15 20 20 C 1.39700 * 119.05436 * 0.02562 * 16 15 14 21 21 N 1.31677 * 120.86699 * 359.97438 * 20 16 15 22 22 C 1.32048 * 121.98471 * 359.72604 * 21 20 16 23 23 F 1.35105 * 119.57287 * 180.26417 * 22 21 20 24 24 N 1.32246 * 120.78318 * 359.97438 * 13 12 11 25 25 H 0.96997 * 119.99614 * 174.66460 * 1 2 3 26 26 H 1.08005 * 120.40119 * 359.97438 * 10 9 7 27 27 H 1.08000 * 120.65101 * 180.24171 * 11 10 9 28 28 H 1.08003 * 120.26224 * 179.70404 * 12 11 10 29 29 H 1.07996 * 120.89495 * 359.95501 * 15 14 13 30 30 H 0.96707 * 117.00190 * 180.02562 * 19 17 16 31 31 H 1.08001 * 119.56584 * 180.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4890 2.0464 1.4001 5 1 3.5389 1.4403 -0.7000 6 1 1.4388 2.6527 -0.6998 7 6 2.0076 -1.2126 0.0056 8 1 2.9944 -1.2683 -0.4298 9 6 1.4228 -2.3637 0.5813 10 6 2.0163 -3.6237 0.3803 11 6 1.4375 -4.7408 0.9535 12 6 0.2800 -4.5817 1.7012 13 6 -0.2660 -3.3036 1.8605 14 6 -1.5028 -3.1298 2.6595 15 6 -2.5842 -3.9921 2.4854 16 6 -3.7275 -3.7847 3.2651 17 6 -4.9019 -4.6675 3.1213 18 8 -4.8801 -5.5822 2.3221 19 8 -5.9979 -4.4588 3.8764 20 6 -3.7422 -2.7296 4.1806 21 7 -2.6992 -1.9371 4.3148 22 6 -1.5993 -2.1019 3.6030 23 9 -0.5558 -1.2630 3.7841 24 7 0.3085 -2.2485 1.3077 25 1 -0.4849 -0.8364 -0.0781 26 1 2.9152 -3.7162 -0.2113 27 1 1.8754 -5.7187 0.8177 28 1 -0.1960 -5.4377 2.1563 29 1 -2.5407 -4.7981 1.7680 30 1 -6.7418 -5.0631 3.7470 31 1 -4.6202 -2.5622 4.7868 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244758043.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:17 Heat of formation + Delta-G solvation = -75.105150 kcal Electronic energy + Delta-G solvation = -21674.281481 eV Core-core repulsion = 18027.772363 eV Total energy + Delta-G solvation = -3646.509118 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.070 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.61558 -40.71937 -39.43660 -38.34296 -36.27799 -34.21930 -32.98625 -31.93966 -30.59200 -29.20109 -25.71030 -24.93953 -24.25333 -22.22843 -21.37159 -20.80492 -18.61051 -18.11677 -17.85457 -17.15983 -16.85454 -15.98465 -15.55760 -15.25638 -14.95220 -14.59873 -14.11022 -14.02158 -13.51366 -13.37580 -12.99383 -12.97091 -12.70085 -12.51554 -12.06640 -11.76376 -11.63274 -11.12052 -10.99648 -10.80487 -10.43910 -10.17723 -9.99853 -9.71053 -9.21350 -9.03530 -8.53507 -8.17616 -7.77081 -7.13293 -4.70350 0.36462 0.98143 2.27016 2.56310 2.70905 2.78157 3.15392 3.23845 3.34057 3.59901 3.65130 3.99696 4.46934 4.54062 4.57580 4.71014 4.97821 5.26173 5.50619 5.56274 5.83104 5.86529 5.98252 6.24036 6.24595 6.44725 6.52773 6.60611 6.87913 7.26600 7.44564 7.51834 7.63769 7.70176 7.73526 7.90190 8.50007 8.64037 9.58733 10.03760 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.019970 B = 0.005107 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.739723 B = 5481.504731 C = 6231.517573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.040 3.960 3 Si 1.069 2.931 4 H -0.273 1.273 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.481 4.481 8 H 0.085 0.915 9 C 0.245 3.755 10 C -0.266 4.266 11 C -0.048 4.048 12 C -0.305 4.305 13 C 0.187 3.813 14 C -0.093 4.093 15 C 0.027 3.973 16 C -0.206 4.206 17 C 0.541 3.459 18 O -0.511 6.511 19 O -0.512 6.512 20 C 0.190 3.810 21 N -0.524 5.524 22 C 0.372 3.628 23 F -0.082 7.082 24 N -0.534 5.534 25 H 0.309 0.691 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.100 0.900 29 H 0.159 0.841 30 H 0.416 0.584 31 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.820 -5.067 5.859 11.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C -0.190 4.190 3 Si 0.892 3.108 4 H -0.198 1.198 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.511 4.511 8 H 0.103 0.897 9 C 0.123 3.877 10 C -0.289 4.289 11 C -0.071 4.071 12 C -0.329 4.329 13 C 0.042 3.958 14 C -0.097 4.097 15 C 0.001 3.999 16 C -0.210 4.210 17 C 0.384 3.616 18 O -0.400 6.400 19 O -0.324 6.324 20 C 0.031 3.969 21 N -0.239 5.239 22 C 0.220 3.780 23 F -0.060 7.060 24 N -0.249 5.249 25 H 0.124 0.876 26 H 0.121 0.879 27 H 0.121 0.879 28 H 0.118 0.882 29 H 0.177 0.823 30 H 0.275 0.725 31 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -7.990 -1.851 6.384 10.393 hybrid contribution 0.317 -3.548 -0.744 3.639 sum -7.673 -5.399 5.640 10.947 Atomic orbital electron populations 1.70185 1.08487 1.35509 1.22073 1.27025 0.95710 1.04123 0.92102 0.83588 0.75332 0.73532 0.78342 1.19827 1.20101 1.20050 1.20627 1.03920 0.94030 1.32537 0.89656 1.18442 0.87740 0.92145 0.89410 1.21743 1.04431 0.93570 1.09106 1.20812 0.94353 0.97219 0.94735 1.20956 1.02762 0.95801 1.13384 1.18944 0.91502 0.90726 0.94596 1.19493 0.96232 0.95909 0.98092 1.21673 0.88350 0.95852 0.94004 1.19867 0.94499 1.01397 1.05206 1.20407 0.82057 0.82040 0.77048 1.90914 1.82257 1.31350 1.35473 1.84535 1.26187 1.59574 1.62070 1.22876 0.94724 0.86892 0.92408 1.67109 1.00174 1.29719 1.26853 1.18548 0.83528 0.85861 0.90087 1.91735 1.52627 1.68497 1.93149 1.68225 1.12995 1.29619 1.14029 0.87563 0.87855 0.87926 0.88178 0.82305 0.72547 0.80352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.08 13.05 55.55 0.72 -19.36 16 2 C 0.04 1.02 5.24 -17.35 -0.09 0.92 16 3 Si 1.07 21.56 30.02 -169.99 -5.10 16.46 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.17 7.11 56.52 0.40 -4.76 16 6 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.48 -12.58 9.00 -37.72 -0.34 -12.92 16 8 H 0.09 2.10 7.98 -52.49 -0.42 1.69 16 9 C 0.25 6.48 6.26 -85.01 -0.53 5.94 16 10 C -0.27 -6.29 9.83 -38.64 -0.38 -6.67 16 11 C -0.05 -1.02 10.15 -39.40 -0.40 -1.42 16 12 C -0.30 -6.51 9.48 -38.79 -0.37 -6.88 16 13 C 0.19 4.32 6.18 -82.94 -0.51 3.81 16 14 C -0.09 -1.84 5.64 -104.73 -0.59 -2.43 16 15 C 0.03 0.44 9.05 -38.51 -0.35 0.10 16 16 C -0.21 -2.89 5.88 -104.89 -0.62 -3.51 16 17 C 0.54 6.68 8.27 34.56 0.29 6.97 16 18 O -0.51 -7.71 17.20 -19.25 -0.33 -8.04 16 19 O -0.51 -4.24 12.69 -40.55 -0.51 -4.75 16 20 C 0.19 2.59 10.78 -17.07 -0.18 2.41 16 21 N -0.52 -9.08 10.34 -12.91 -0.13 -9.21 16 22 C 0.37 7.47 8.36 -16.85 -0.14 7.32 16 23 F -0.08 -1.85 16.32 2.25 0.04 -1.82 16 24 N -0.53 -13.96 6.90 -7.68 -0.05 -14.01 16 25 H 0.31 8.69 6.70 -40.82 -0.27 8.42 16 26 H 0.10 2.26 8.06 -52.48 -0.42 1.84 16 27 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 28 H 0.10 1.86 7.94 -52.48 -0.42 1.45 16 29 H 0.16 2.51 7.65 -52.49 -0.40 2.11 16 30 H 0.42 1.50 9.11 45.56 0.42 1.91 16 31 H 0.18 1.76 7.61 -52.49 -0.40 1.36 16 LS Contribution 295.08 15.07 4.45 4.45 Total: -1.00 -31.07 295.08 -6.28 -37.35 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -1.14 Total: 5.30 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -4.22 Total: -6.36 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 0.54 Total: -42.58 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: -0.85 Total: -12.79 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.10 Total: 16.46 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.07 -6.28 -37.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244758043.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.758 kcal (2) G-P(sol) polarization free energy of solvation -31.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds