Wall clock time and date at job start Tue Mar 31 2020 05:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30734 * 1 3 3 Si 1.86809 * 119.99855 * 2 1 4 4 H 1.48497 * 109.47193 * 270.00026 * 3 2 1 5 5 H 1.48493 * 109.46969 * 30.00174 * 3 2 1 6 6 H 1.48497 * 109.46631 * 150.00106 * 3 2 1 7 7 C 1.40047 * 120.00276 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99801 * 189.69638 * 7 2 1 9 9 C 1.41528 * 119.99666 * 9.68947 * 7 2 1 10 10 C 1.41144 * 120.98596 * 206.36525 * 9 7 2 11 11 C 1.37723 * 119.07894 * 179.97438 * 10 9 7 12 12 N 1.31932 * 121.16038 * 0.02562 * 11 10 9 13 13 C 1.32794 * 122.20167 * 359.97438 * 12 11 10 14 14 C 1.48334 * 119.61669 * 179.97438 * 13 12 11 15 15 C 1.39347 * 120.47861 * 174.49888 * 14 13 12 16 16 C 1.39951 * 118.20561 * 180.27899 * 15 14 13 17 17 C 1.47622 * 120.47725 * 180.02562 * 16 15 14 18 18 O 1.21486 * 120.00262 * 0.02562 * 17 16 15 19 19 O 1.34723 * 120.00315 * 179.97438 * 17 16 15 20 20 C 1.39683 * 119.05059 * 0.02562 * 16 15 14 21 21 N 1.31674 * 120.85305 * 359.97438 * 20 16 15 22 22 C 1.32043 * 121.98818 * 0.02562 * 21 20 16 23 23 F 1.35103 * 119.57396 * 179.97438 * 22 21 20 24 24 C 1.38924 * 120.77040 * 0.26166 * 13 12 11 25 25 H 0.97002 * 120.00042 * 0.02562 * 1 2 3 26 26 H 1.08005 * 120.46321 * 0.02562 * 10 9 7 27 27 H 1.08003 * 119.42507 * 180.02562 * 11 10 9 28 28 H 1.08000 * 120.89625 * 0.27357 * 15 14 13 29 29 H 0.96702 * 117.00156 * 179.97438 * 19 17 16 30 30 H 1.07994 * 119.57504 * 180.02562 * 20 16 15 31 31 H 1.08000 * 120.61887 * 179.72250 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.4888 2.0465 -1.4000 5 1 1.4388 2.6527 0.7000 6 1 3.5389 1.4402 0.7000 7 6 2.0076 -1.2128 -0.0005 8 1 3.0760 -1.2195 0.1570 9 6 1.3151 -2.4296 -0.2074 10 6 1.8134 -3.6458 0.3071 11 6 1.1073 -4.8068 0.0829 12 7 -0.0204 -4.7985 -0.6018 13 6 -0.5331 -3.6827 -1.1074 14 6 -1.8050 -3.7396 -1.8686 15 6 -2.4183 -2.5683 -2.3088 16 6 -3.6200 -2.6770 -3.0177 17 6 -4.3121 -1.4687 -3.5078 18 8 -3.8387 -0.3699 -3.2971 19 8 -5.4683 -1.5845 -4.1897 20 6 -4.1553 -3.9452 -3.2548 21 7 -3.5440 -5.0280 -2.8215 22 6 -2.4091 -4.9689 -2.1492 23 9 -1.8239 -6.1111 -1.7271 24 6 0.1109 -2.4636 -0.9368 25 1 -0.4850 0.8401 -0.0004 26 1 2.7353 -3.6657 0.8695 27 1 1.4833 -5.7405 0.4743 28 1 -1.9781 -1.6027 -2.1082 29 1 -5.8848 -0.7651 -4.4901 30 1 -5.0820 -4.0390 -3.8013 31 1 -0.3060 -1.5584 -1.3529 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244758299.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:28 Heat of formation + Delta-G solvation = -68.346655 kcal Electronic energy + Delta-G solvation = -21624.370150 eV Core-core repulsion = 17978.154102 eV Total energy + Delta-G solvation = -3646.216048 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.070 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.49405 -40.60677 -39.34131 -38.27717 -36.15086 -34.31159 -33.18870 -31.79793 -30.68824 -28.70147 -26.19644 -24.89407 -24.22574 -22.10770 -21.43389 -20.58841 -18.38981 -18.01332 -17.55299 -17.00823 -16.41164 -15.89053 -15.63094 -15.44519 -14.82332 -14.55528 -14.31277 -13.79281 -13.33166 -13.15731 -12.99815 -12.89305 -12.73310 -12.51262 -12.41464 -11.63988 -11.51650 -11.30953 -11.04382 -10.82136 -10.35399 -10.16820 -10.03294 -9.66378 -9.57933 -9.14507 -8.20994 -8.11981 -7.48091 -6.93178 -4.76173 0.44995 1.02968 2.35412 2.67408 2.74182 2.87364 2.97248 3.00261 3.12848 3.68873 3.76246 3.78369 4.53942 4.61219 4.67624 4.86688 5.04355 5.38363 5.48114 5.57625 5.86989 6.08372 6.13656 6.36544 6.51727 6.64889 6.72726 6.74521 6.98701 7.09612 7.23313 7.60346 7.68446 7.82521 7.90022 8.26036 8.53584 8.59541 9.33641 9.96289 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.013447 B = 0.006397 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.811906 B = 4375.680516 C = 6397.016864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.074 3.926 3 Si 0.917 3.083 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.450 4.450 8 H 0.084 0.916 9 C 0.123 3.877 10 C -0.263 4.263 11 C 0.107 3.893 12 N -0.554 5.554 13 C 0.126 3.874 14 C -0.088 4.088 15 C 0.022 3.978 16 C -0.201 4.201 17 C 0.537 3.463 18 O -0.504 6.504 19 O -0.514 6.514 20 C 0.182 3.818 21 N -0.528 5.528 22 C 0.359 3.641 23 F -0.078 7.078 24 C -0.176 4.176 25 H 0.287 0.713 26 H 0.105 0.895 27 H 0.127 0.873 28 H 0.168 0.832 29 H 0.415 0.585 30 H 0.177 0.823 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.392 -0.603 -5.871 9.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.145 4.145 3 Si 0.741 3.259 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.481 4.481 8 H 0.102 0.898 9 C 0.115 3.885 10 C -0.286 4.286 11 C -0.049 4.049 12 N -0.268 5.268 13 C -0.005 4.005 14 C -0.092 4.092 15 C -0.004 4.004 16 C -0.205 4.205 17 C 0.380 3.620 18 O -0.392 6.392 19 O -0.326 6.326 20 C 0.023 3.977 21 N -0.242 5.242 22 C 0.207 3.793 23 F -0.056 7.056 24 C -0.199 4.199 25 H 0.098 0.902 26 H 0.123 0.877 27 H 0.144 0.856 28 H 0.185 0.815 29 H 0.273 0.727 30 H 0.194 0.806 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.037 -2.182 -5.926 10.221 hybrid contribution 1.000 2.680 0.331 2.879 sum -7.038 0.498 -5.594 9.004 Atomic orbital electron populations 1.69662 1.07630 1.29940 1.34421 1.25998 0.94943 1.01704 0.91869 0.86144 0.80292 0.79883 0.79537 1.19048 1.19997 1.18449 1.19647 0.95984 0.89909 1.42554 0.89787 1.17779 0.90917 0.92572 0.87232 1.22015 1.03729 0.94351 1.08496 1.21847 0.90954 0.96731 0.95379 1.67364 1.14637 1.28790 1.16055 1.18821 0.92431 0.90983 0.98266 1.19522 0.97123 0.91303 1.01279 1.21891 0.90287 0.99940 0.88236 1.19880 0.99028 0.92853 1.08769 1.20446 0.78347 0.88560 0.74633 1.90947 1.65558 1.28184 1.54519 1.84526 1.37239 1.42716 1.68117 1.22808 0.97401 0.85120 0.92372 1.67080 1.09323 1.34001 1.13830 1.18538 0.87864 0.82307 0.90617 1.91721 1.81043 1.47227 1.85605 1.22353 0.98815 0.96451 1.02234 0.90218 0.87658 0.85571 0.81479 0.72669 0.80559 0.84483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.11 10.71 55.55 0.60 -18.51 16 2 C 0.07 1.74 5.31 -17.34 -0.09 1.65 16 3 Si 0.92 17.67 29.57 -169.99 -5.03 12.64 16 4 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 5 H -0.28 -5.23 7.11 56.52 0.40 -4.82 16 6 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 7 C -0.45 -11.12 9.13 -37.65 -0.34 -11.47 16 8 H 0.08 1.98 7.87 -52.49 -0.41 1.57 16 9 C 0.12 3.10 5.60 -106.56 -0.60 2.50 16 10 C -0.26 -6.08 9.90 -38.67 -0.38 -6.47 16 11 C 0.11 2.36 11.15 -17.70 -0.20 2.17 16 12 N -0.55 -13.00 8.33 -9.95 -0.08 -13.08 16 13 C 0.13 2.93 6.72 -83.04 -0.56 2.38 16 14 C -0.09 -1.77 5.89 -104.74 -0.62 -2.39 16 15 C 0.02 0.39 9.04 -38.53 -0.35 0.05 16 16 C -0.20 -3.03 5.88 -104.89 -0.62 -3.65 16 17 C 0.54 7.32 8.27 34.56 0.29 7.61 16 18 O -0.50 -8.52 17.20 -19.26 -0.33 -8.85 16 19 O -0.51 -4.72 12.69 -40.56 -0.51 -5.24 16 20 C 0.18 2.51 10.78 -17.08 -0.18 2.33 16 21 N -0.53 -8.84 10.34 -12.93 -0.13 -8.98 16 22 C 0.36 6.88 8.40 -16.87 -0.14 6.74 16 23 F -0.08 -1.58 15.35 2.25 0.03 -1.54 16 24 C -0.18 -4.31 8.12 -38.35 -0.31 -4.62 16 25 H 0.29 6.37 8.29 -40.82 -0.34 6.03 16 26 H 0.11 2.22 8.06 -52.48 -0.42 1.80 16 27 H 0.13 2.37 8.06 -52.48 -0.42 1.95 16 28 H 0.17 3.21 5.99 -52.49 -0.31 2.90 16 29 H 0.41 1.91 9.11 45.56 0.42 2.33 16 30 H 0.18 1.78 7.61 -52.49 -0.40 1.38 16 31 H 0.14 3.37 4.35 -52.49 -0.23 3.14 16 LS Contribution 289.07 15.07 4.36 4.36 Total: -1.00 -29.22 289.07 -6.13 -35.35 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -0.92 Total: 7.03 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -4.10 Total: -3.18 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 0.38 Total: -40.57 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -0.85 Total: -14.09 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.03 Total: -1.54 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -5.03 Total: 12.64 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.22 -6.13 -35.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244758299.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.996 kcal (2) G-P(sol) polarization free energy of solvation -29.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds