Wall clock time and date at job start Tue Mar 31 2020 05:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30734 * 1 3 3 Si 1.86809 * 119.99855 * 2 1 4 4 H 1.48497 * 109.47193 * 270.00026 * 3 2 1 5 5 H 1.48493 * 109.46969 * 30.00174 * 3 2 1 6 6 H 1.48497 * 109.46631 * 150.00106 * 3 2 1 7 7 C 1.40047 * 120.00276 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99801 * 189.69638 * 7 2 1 9 9 C 1.41528 * 119.99666 * 9.68947 * 7 2 1 10 10 C 1.41144 * 120.98596 * 206.36525 * 9 7 2 11 11 C 1.37723 * 119.07894 * 179.97438 * 10 9 7 12 12 N 1.31932 * 121.16038 * 0.02562 * 11 10 9 13 13 C 1.32794 * 122.20167 * 359.97438 * 12 11 10 14 14 C 1.48334 * 119.61669 * 179.97438 * 13 12 11 15 15 C 1.39347 * 120.47861 * 174.49888 * 14 13 12 16 16 C 1.39951 * 118.20561 * 180.27899 * 15 14 13 17 17 C 1.47622 * 120.47725 * 180.02562 * 16 15 14 18 18 O 1.21486 * 120.00262 * 0.02562 * 17 16 15 19 19 O 1.34723 * 120.00315 * 179.97438 * 17 16 15 20 20 C 1.39683 * 119.05059 * 0.02562 * 16 15 14 21 21 N 1.31674 * 120.85305 * 359.97438 * 20 16 15 22 22 C 1.32043 * 121.98818 * 0.02562 * 21 20 16 23 23 F 1.35103 * 119.57396 * 179.97438 * 22 21 20 24 24 C 1.38924 * 120.77040 * 0.26166 * 13 12 11 25 25 H 0.97002 * 120.00042 * 0.02562 * 1 2 3 26 26 H 1.08005 * 120.46321 * 0.02562 * 10 9 7 27 27 H 1.08003 * 119.42507 * 180.02562 * 11 10 9 28 28 H 1.08000 * 120.89625 * 0.27357 * 15 14 13 29 29 H 0.96702 * 117.00156 * 179.97438 * 19 17 16 30 30 H 1.07994 * 119.57504 * 180.02562 * 20 16 15 31 31 H 1.08000 * 120.61887 * 179.72250 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.4888 2.0465 -1.4000 5 1 1.4388 2.6527 0.7000 6 1 3.5389 1.4402 0.7000 7 6 2.0076 -1.2128 -0.0005 8 1 3.0760 -1.2195 0.1570 9 6 1.3151 -2.4296 -0.2074 10 6 1.8134 -3.6458 0.3071 11 6 1.1073 -4.8068 0.0829 12 7 -0.0204 -4.7985 -0.6018 13 6 -0.5331 -3.6827 -1.1074 14 6 -1.8050 -3.7396 -1.8686 15 6 -2.4183 -2.5683 -2.3088 16 6 -3.6200 -2.6770 -3.0177 17 6 -4.3121 -1.4687 -3.5078 18 8 -3.8387 -0.3699 -3.2971 19 8 -5.4683 -1.5845 -4.1897 20 6 -4.1553 -3.9452 -3.2548 21 7 -3.5440 -5.0280 -2.8215 22 6 -2.4091 -4.9689 -2.1492 23 9 -1.8239 -6.1111 -1.7271 24 6 0.1109 -2.4636 -0.9368 25 1 -0.4850 0.8401 -0.0004 26 1 2.7353 -3.6657 0.8695 27 1 1.4833 -5.7405 0.4743 28 1 -1.9781 -1.6027 -2.1082 29 1 -5.8848 -0.7651 -4.4901 30 1 -5.0820 -4.0390 -3.8013 31 1 -0.3060 -1.5584 -1.3529 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244758299.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:28 Heat of formation + Delta-G solvation = -87.115116 kcal Electronic energy + Delta-G solvation = -21625.184011 eV Core-core repulsion = 17978.154102 eV Total energy + Delta-G solvation = -3647.029909 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.070 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.01262 -41.84476 -40.64915 -39.91798 -37.13724 -36.09647 -34.67780 -33.21253 -32.45657 -30.33457 -28.00399 -26.19396 -25.69012 -23.65505 -23.03859 -22.06132 -19.74195 -19.40987 -19.02896 -18.20807 -17.83544 -17.36826 -17.24301 -16.63551 -16.38815 -16.23766 -16.00984 -15.11087 -14.81073 -14.59847 -14.44202 -14.43028 -14.32406 -14.07706 -13.86710 -13.20415 -12.93670 -12.76505 -12.61783 -12.06840 -11.96071 -11.88164 -11.54519 -11.29419 -11.02564 -10.57881 -10.03124 -9.93821 -9.18324 -8.69527 -6.63655 -0.88040 -0.40739 0.85869 0.92712 1.35394 1.38138 1.51243 1.55108 1.83856 2.15749 2.31984 2.40594 2.77316 3.20169 3.30083 3.54032 3.63783 3.78194 3.94798 4.29569 4.44820 4.62924 4.74027 4.81764 4.94291 4.99535 5.17763 5.21020 5.34054 5.43594 5.51768 5.86171 6.09489 6.28313 6.42581 6.70694 6.75535 6.92816 7.54266 8.21354 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.013447 B = 0.006397 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.811906 B = 4375.680516 C = 6397.016864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.036 3.964 3 Si 0.988 3.012 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.255 1.255 7 C -0.479 4.479 8 H 0.087 0.913 9 C 0.094 3.906 10 C -0.276 4.276 11 C 0.103 3.897 12 N -0.566 5.566 13 C 0.124 3.876 14 C -0.117 4.117 15 C 0.023 3.977 16 C -0.196 4.196 17 C 0.551 3.449 18 O -0.541 6.541 19 O -0.490 6.490 20 C 0.210 3.790 21 N -0.528 5.528 22 C 0.354 3.646 23 F -0.090 7.090 24 C -0.202 4.202 25 H 0.292 0.708 26 H 0.121 0.879 27 H 0.161 0.839 28 H 0.148 0.852 29 H 0.439 0.561 30 H 0.228 0.772 31 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.023 -0.316 -6.977 11.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.181 4.181 3 Si 0.808 3.192 4 H -0.186 1.186 5 H -0.193 1.193 6 H -0.178 1.178 7 C -0.510 4.510 8 H 0.105 0.895 9 C 0.086 3.914 10 C -0.299 4.299 11 C -0.052 4.052 12 N -0.281 5.281 13 C -0.008 4.008 14 C -0.122 4.122 15 C -0.003 4.003 16 C -0.199 4.199 17 C 0.395 3.605 18 O -0.432 6.432 19 O -0.304 6.304 20 C 0.051 3.949 21 N -0.243 5.243 22 C 0.202 3.798 23 F -0.068 7.068 24 C -0.224 4.224 25 H 0.103 0.897 26 H 0.139 0.861 27 H 0.178 0.822 28 H 0.166 0.834 29 H 0.303 0.697 30 H 0.244 0.756 31 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.695 -1.914 -7.043 12.135 hybrid contribution 1.311 2.545 0.580 2.921 sum -8.384 0.631 -6.463 10.604 Atomic orbital electron populations 1.69735 1.08975 1.31039 1.34575 1.26847 0.95656 1.04710 0.90892 0.85095 0.79044 0.75421 0.79620 1.18643 1.19271 1.17817 1.19922 0.96327 0.90782 1.43977 0.89493 1.18208 0.91645 0.93738 0.87782 1.22238 1.04542 0.94179 1.08931 1.22398 0.90412 0.97836 0.94538 1.67494 1.15202 1.28833 1.16557 1.19225 0.93350 0.90512 0.97675 1.19402 0.96922 0.92622 1.03226 1.21764 0.91450 0.98501 0.88607 1.20006 0.97847 0.94463 1.07627 1.20055 0.79011 0.87105 0.74303 1.90956 1.66847 1.29330 1.56088 1.84451 1.34942 1.44389 1.66633 1.23602 0.97681 0.83553 0.90051 1.67241 1.08324 1.34979 1.13716 1.18548 0.88592 0.81509 0.91168 1.91679 1.81511 1.47666 1.85947 1.22326 0.99570 0.96829 1.03721 0.89694 0.86135 0.82183 0.83393 0.69738 0.75611 0.85349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.77 10.71 21.84 0.23 -40.53 16 2 C 0.04 1.70 5.31 85.29 0.45 2.15 16 3 Si 0.99 36.41 29.57 68.60 2.03 38.44 16 4 H -0.26 -9.42 7.11 99.48 0.71 -8.72 16 5 H -0.27 -9.50 7.11 99.48 0.71 -8.79 16 6 H -0.25 -9.05 7.11 99.48 0.71 -8.35 16 7 C -0.48 -24.48 9.13 23.52 0.21 -24.27 16 8 H 0.09 4.21 7.87 -2.91 -0.02 4.19 16 9 C 0.09 4.93 5.60 -21.12 -0.12 4.82 16 10 C -0.28 -13.09 9.90 22.86 0.23 -12.86 16 11 C 0.10 4.62 11.15 84.56 0.94 5.56 16 12 N -0.57 -27.09 8.33 -185.38 -1.54 -28.63 16 13 C 0.12 5.98 6.72 41.85 0.28 6.26 16 14 C -0.12 -4.82 5.89 -19.94 -0.12 -4.94 16 15 C 0.02 0.83 9.04 22.95 0.21 1.04 16 16 C -0.20 -5.51 5.88 -20.04 -0.12 -5.63 16 17 C 0.55 13.61 8.27 70.30 0.58 14.19 16 18 O -0.54 -17.70 17.20 19.88 0.34 -17.36 16 19 O -0.49 -6.78 12.69 -56.33 -0.72 -7.50 16 20 C 0.21 5.05 10.78 85.07 0.92 5.97 16 21 N -0.53 -16.52 10.34 -194.82 -2.01 -18.53 16 22 C 0.35 13.43 8.40 85.04 0.71 14.14 16 23 F -0.09 -3.65 15.35 44.97 0.69 -2.96 16 24 C -0.20 -10.40 8.12 23.07 0.19 -10.21 16 25 H 0.29 13.31 8.29 -92.71 -0.77 12.54 16 26 H 0.12 5.15 8.06 -2.91 -0.02 5.13 16 27 H 0.16 5.86 8.06 -2.91 -0.02 5.84 16 28 H 0.15 6.01 5.99 -2.91 -0.02 5.99 16 29 H 0.44 2.03 9.11 -74.06 -0.67 1.35 16 30 H 0.23 3.20 7.61 -2.91 -0.02 3.17 16 31 H 0.13 6.72 4.35 -2.91 -0.01 6.71 16 Total: -1.00 -65.74 289.07 3.95 -61.79 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 0.56 Total: 19.07 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: 4.37 Total: -3.78 kcal Atomic # 7 Polarization: -84.37 SS G_CDS: -3.33 Total: -87.70 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.37 Total: -24.85 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.69 Total: -2.96 kcal Atomic # 14 Polarization: 36.41 SS G_CDS: 2.03 Total: 38.44 kcal Total: -65.74 3.95 -61.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244758299.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.324 kcal (2) G-P(sol) polarization free energy of solvation -65.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds