Wall clock time and date at job start Tue Mar 31 2020 05:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86809 * 119.99647 * 2 1 4 4 H 1.48498 * 109.47079 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.46773 * 119.99907 * 3 2 1 6 6 H 1.48498 * 109.46880 * 239.99955 * 3 2 1 7 7 C 1.40028 * 120.00541 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99297 * 2.55915 * 7 2 1 9 9 C 1.41426 * 120.00304 * 182.56415 * 7 2 1 10 10 C 1.40466 * 119.77832 * 186.79198 * 9 7 2 11 11 C 1.39327 * 118.83505 * 179.75406 * 10 9 7 12 12 C 1.48356 * 120.82127 * 180.26550 * 11 10 9 13 13 C 1.39333 * 120.47843 * 129.97943 * 12 11 10 14 14 C 1.39961 * 118.20751 * 179.71524 * 13 12 11 15 15 C 1.47618 * 120.47581 * 180.28197 * 14 13 12 16 16 O 1.21486 * 120.00182 * 0.31774 * 15 14 13 17 17 O 1.34727 * 119.99865 * 180.32238 * 15 14 13 18 18 C 1.39680 * 119.04536 * 0.59569 * 14 13 12 19 19 N 1.31672 * 120.85511 * 359.66116 * 18 14 13 20 20 C 1.32049 * 121.98431 * 0.02603 * 19 18 14 21 21 F 1.35106 * 119.56828 * 180.02562 * 20 19 18 22 22 C 1.40046 * 118.35391 * 0.51356 * 11 10 9 23 23 C 1.38494 * 119.42359 * 359.74535 * 22 11 10 24 24 N 1.31492 * 121.14699 * 359.97438 * 23 22 11 25 25 H 0.96999 * 119.99757 * 174.84292 * 1 2 3 26 26 H 1.08005 * 120.57971 * 0.02562 * 10 9 7 27 27 H 1.08005 * 120.89430 * 359.97438 * 13 12 11 28 28 H 0.96697 * 116.99964 * 179.97438 * 17 15 14 29 29 H 1.08004 * 119.57196 * 179.68000 * 18 14 13 30 30 H 1.07999 * 120.28896 * 179.73114 * 22 11 10 31 31 H 1.07997 * 119.42836 * 179.97438 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6179 0.0000 4 1 1.2763 2.7465 0.0006 5 1 3.0951 1.6965 1.2126 6 1 3.0951 1.6965 -1.2125 7 6 2.0077 -1.2126 -0.0005 8 1 1.4684 -2.1475 -0.0427 9 6 3.4209 -1.2132 0.0543 10 6 4.1241 -2.4205 -0.0904 11 6 5.5162 -2.3976 -0.0384 12 6 6.3032 -3.6459 -0.1918 13 6 7.3634 -3.7065 -1.0938 14 6 8.0775 -4.9059 -1.1957 15 6 9.2138 -5.0236 -2.1307 16 8 9.5388 -4.0735 -2.8145 17 8 9.8904 -6.1848 -2.2258 18 6 7.6953 -5.9920 -0.4049 19 7 6.6833 -5.8951 0.4319 20 6 5.9881 -4.7801 0.5625 21 9 4.9590 -4.7346 1.4367 22 6 6.1540 -1.1679 0.1676 23 6 5.3909 -0.0206 0.3069 24 7 4.0780 -0.0658 0.2487 25 1 -0.4850 -0.8367 -0.0755 26 1 3.5951 -3.3496 -0.2437 27 1 7.6297 -2.8497 -1.6950 28 1 10.6266 -6.2139 -2.8520 29 1 8.2372 -6.9232 -0.4805 30 1 7.2315 -1.1148 0.2176 31 1 5.8826 0.9276 0.4661 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244763767.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:24 Heat of formation + Delta-G solvation = -80.198708 kcal Electronic energy + Delta-G solvation = -21319.995350 eV Core-core repulsion = 17673.265359 eV Total energy + Delta-G solvation = -3646.729991 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.070 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.03979 -40.92835 -39.64837 -38.61806 -36.43622 -34.34826 -33.47858 -32.32196 -30.56655 -29.71791 -25.80043 -25.29017 -24.34254 -22.64608 -21.45355 -20.82516 -18.77777 -18.45378 -18.11903 -17.35518 -16.97317 -16.29502 -15.85985 -15.73646 -15.10484 -14.83632 -14.26015 -14.07538 -13.64672 -13.57622 -13.28774 -13.24044 -12.82009 -12.76564 -12.33167 -12.23900 -11.91758 -11.13409 -11.00911 -10.78996 -10.35100 -10.29249 -9.91323 -9.71436 -9.48443 -9.36713 -8.42216 -8.13486 -7.81470 -7.35612 -4.92517 0.10665 0.74755 2.06401 2.34964 2.39561 2.60720 3.30757 3.38526 3.56971 3.61891 3.97641 4.24678 4.36044 4.38981 4.47912 4.49621 4.83745 5.04152 5.31508 5.38688 5.57642 5.65402 5.72587 6.01677 6.09683 6.24111 6.24833 6.35527 6.75149 7.01858 7.14310 7.25089 7.33384 7.43475 7.53404 7.93608 8.11609 8.48740 9.31634 9.89102 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.026149 B = 0.004281 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.545825 B = 6539.683507 C = 7166.102731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.042 3.958 3 Si 1.155 2.845 4 H -0.331 1.331 5 H -0.278 1.278 6 H -0.292 1.292 7 C -0.465 4.465 8 H 0.083 0.917 9 C 0.249 3.751 10 C -0.226 4.226 11 C 0.004 3.996 12 C -0.100 4.100 13 C 0.025 3.975 14 C -0.199 4.199 15 C 0.539 3.461 16 O -0.507 6.507 17 O -0.511 6.511 18 C 0.188 3.812 19 N -0.519 5.519 20 C 0.351 3.649 21 F -0.091 7.091 22 C -0.300 4.300 23 C 0.157 3.843 24 N -0.570 5.570 25 H 0.284 0.716 26 H 0.108 0.892 27 H 0.162 0.838 28 H 0.417 0.583 29 H 0.181 0.819 30 H 0.108 0.892 31 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.527 -9.805 -2.571 18.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.180 4.180 3 Si 0.989 3.011 4 H -0.265 1.265 5 H -0.205 1.205 6 H -0.220 1.220 7 C -0.496 4.496 8 H 0.101 0.899 9 C 0.126 3.874 10 C -0.249 4.249 11 C -0.002 4.002 12 C -0.104 4.104 13 C 0.000 4.000 14 C -0.202 4.202 15 C 0.382 3.618 16 O -0.396 6.396 17 O -0.324 6.324 18 C 0.029 3.971 19 N -0.233 5.233 20 C 0.199 3.801 21 F -0.070 7.070 22 C -0.323 4.323 23 C -0.004 4.004 24 N -0.289 5.289 25 H 0.096 0.904 26 H 0.126 0.874 27 H 0.180 0.820 28 H 0.277 0.723 29 H 0.198 0.802 30 H 0.126 0.874 31 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 14.147 -7.995 -1.771 16.346 hybrid contribution 1.100 -2.161 -0.866 2.575 sum 15.247 -10.157 -2.637 18.509 Atomic orbital electron populations 1.70650 1.08211 1.32956 1.29984 1.27898 0.95275 1.06352 0.88436 0.81820 0.70614 0.69225 0.79404 1.26466 1.20541 1.22023 1.20858 0.90290 0.96482 1.41959 0.89858 1.18549 0.93977 0.86634 0.88197 1.21702 0.91854 0.99071 1.12234 1.18276 0.92668 0.89994 0.99270 1.19683 0.97975 0.94733 0.97990 1.21764 0.89142 0.96597 0.92487 1.19960 0.99606 0.97358 1.03314 1.20389 0.81152 0.79959 0.80273 1.90932 1.66471 1.39071 1.43113 1.84525 1.47224 1.37401 1.63214 1.22899 0.89525 0.97779 0.86927 1.67086 1.08562 1.25664 1.21995 1.18569 0.85047 0.89405 0.87090 1.91708 1.53668 1.96124 1.65459 1.21085 0.98759 0.92477 1.19986 1.22058 0.89688 0.96691 0.91941 1.66565 1.09311 1.28183 1.24870 0.90433 0.87438 0.82039 0.72350 0.80177 0.87438 0.84939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.32 13.65 55.55 0.76 -20.56 16 2 C 0.04 1.13 5.52 -17.34 -0.10 1.03 16 3 Si 1.15 27.72 25.56 -169.99 -4.34 23.38 16 4 H -0.33 -7.88 7.11 56.52 0.40 -7.48 16 5 H -0.28 -6.61 6.67 56.52 0.38 -6.24 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 7 C -0.46 -12.36 9.58 -37.70 -0.36 -12.72 16 8 H 0.08 2.21 8.05 -52.48 -0.42 1.79 16 9 C 0.25 6.29 6.39 -85.02 -0.54 5.74 16 10 C -0.23 -5.11 8.72 -38.34 -0.33 -5.44 16 11 C 0.00 0.08 5.35 -104.65 -0.56 -0.48 16 12 C -0.10 -1.65 5.52 -104.74 -0.58 -2.23 16 13 C 0.03 0.35 9.24 -38.53 -0.36 -0.01 16 14 C -0.20 -2.34 5.88 -104.89 -0.62 -2.96 16 15 C 0.54 5.69 8.28 34.56 0.29 5.98 16 16 O -0.51 -6.85 17.20 -19.26 -0.33 -7.18 16 17 O -0.51 -3.43 12.69 -40.57 -0.51 -3.94 16 18 C 0.19 2.10 10.78 -17.08 -0.18 1.91 16 19 N -0.52 -7.45 10.34 -12.93 -0.13 -7.58 16 20 C 0.35 5.75 8.32 -16.87 -0.14 5.61 16 21 F -0.09 -1.65 15.97 2.25 0.04 -1.61 16 22 C -0.30 -5.75 9.68 -38.81 -0.38 -6.12 16 23 C 0.16 3.28 11.17 -17.60 -0.20 3.08 16 24 N -0.57 -13.96 4.54 -11.21 -0.05 -14.01 16 25 H 0.28 7.26 8.72 -40.82 -0.36 6.90 16 26 H 0.11 2.35 7.85 -52.48 -0.41 1.94 16 27 H 0.16 2.18 7.73 -52.48 -0.41 1.77 16 28 H 0.42 0.92 9.11 45.56 0.42 1.34 16 29 H 0.18 1.39 7.61 -52.48 -0.40 0.99 16 30 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.13 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 290.43 15.07 4.38 4.38 Total: -1.00 -30.57 290.43 -5.51 -36.08 By element: Atomic # 1 Polarization: -1.11 SS G_CDS: -1.25 Total: -2.35 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -4.06 Total: -6.60 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: 0.57 Total: -42.15 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: -0.85 Total: -11.12 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 27.72 SS G_CDS: -4.34 Total: 23.38 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.57 -5.51 -36.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244763767.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.117 kcal (2) G-P(sol) polarization free energy of solvation -30.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds