Wall clock time and date at job start Tue Mar 31 2020 05:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86809 * 119.99647 * 2 1 4 4 H 1.48498 * 109.47079 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.46773 * 119.99907 * 3 2 1 6 6 H 1.48498 * 109.46880 * 239.99955 * 3 2 1 7 7 C 1.40028 * 120.00541 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99297 * 2.55915 * 7 2 1 9 9 C 1.41426 * 120.00304 * 182.56415 * 7 2 1 10 10 C 1.40466 * 119.77832 * 186.79198 * 9 7 2 11 11 C 1.39327 * 118.83505 * 179.75406 * 10 9 7 12 12 C 1.48356 * 120.82127 * 180.26550 * 11 10 9 13 13 C 1.39333 * 120.47843 * 129.97943 * 12 11 10 14 14 C 1.39961 * 118.20751 * 179.71524 * 13 12 11 15 15 C 1.47618 * 120.47581 * 180.28197 * 14 13 12 16 16 O 1.21486 * 120.00182 * 0.31774 * 15 14 13 17 17 O 1.34727 * 119.99865 * 180.32238 * 15 14 13 18 18 C 1.39680 * 119.04536 * 0.59569 * 14 13 12 19 19 N 1.31672 * 120.85511 * 359.66116 * 18 14 13 20 20 C 1.32049 * 121.98431 * 0.02603 * 19 18 14 21 21 F 1.35106 * 119.56828 * 180.02562 * 20 19 18 22 22 C 1.40046 * 118.35391 * 0.51356 * 11 10 9 23 23 C 1.38494 * 119.42359 * 359.74535 * 22 11 10 24 24 N 1.31492 * 121.14699 * 359.97438 * 23 22 11 25 25 H 0.96999 * 119.99757 * 174.84292 * 1 2 3 26 26 H 1.08005 * 120.57971 * 0.02562 * 10 9 7 27 27 H 1.08005 * 120.89430 * 359.97438 * 13 12 11 28 28 H 0.96697 * 116.99964 * 179.97438 * 17 15 14 29 29 H 1.08004 * 119.57196 * 179.68000 * 18 14 13 30 30 H 1.07999 * 120.28896 * 179.73114 * 22 11 10 31 31 H 1.07997 * 119.42836 * 179.97438 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6179 0.0000 4 1 1.2763 2.7465 0.0006 5 1 3.0951 1.6965 1.2126 6 1 3.0951 1.6965 -1.2125 7 6 2.0077 -1.2126 -0.0005 8 1 1.4684 -2.1475 -0.0427 9 6 3.4209 -1.2132 0.0543 10 6 4.1241 -2.4205 -0.0904 11 6 5.5162 -2.3976 -0.0384 12 6 6.3032 -3.6459 -0.1918 13 6 7.3634 -3.7065 -1.0938 14 6 8.0775 -4.9059 -1.1957 15 6 9.2138 -5.0236 -2.1307 16 8 9.5388 -4.0735 -2.8145 17 8 9.8904 -6.1848 -2.2258 18 6 7.6953 -5.9920 -0.4049 19 7 6.6833 -5.8951 0.4319 20 6 5.9881 -4.7801 0.5625 21 9 4.9590 -4.7346 1.4367 22 6 6.1540 -1.1679 0.1676 23 6 5.3909 -0.0206 0.3069 24 7 4.0780 -0.0658 0.2487 25 1 -0.4850 -0.8367 -0.0755 26 1 3.5951 -3.3496 -0.2437 27 1 7.6297 -2.8497 -1.6950 28 1 10.6266 -6.2139 -2.8520 29 1 8.2372 -6.9232 -0.4805 30 1 7.2315 -1.1148 0.2176 31 1 5.8826 0.9276 0.4661 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244763767.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:23 Heat of formation + Delta-G solvation = -100.675234 kcal Electronic energy + Delta-G solvation = -21320.883279 eV Core-core repulsion = 17673.265359 eV Total energy + Delta-G solvation = -3647.617920 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.070 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.34699 -41.91452 -40.76049 -40.17470 -37.16146 -36.04447 -35.05520 -33.45401 -32.36554 -31.13324 -27.58194 -26.34964 -25.61164 -24.03801 -22.88298 -22.26040 -20.37178 -19.52911 -19.31186 -18.35712 -18.11929 -17.58284 -17.26173 -16.80665 -16.69335 -16.37478 -15.74426 -15.40199 -14.98837 -14.65130 -14.62910 -14.54267 -14.34849 -14.30718 -14.11107 -13.84536 -12.68443 -12.63134 -12.62156 -12.17057 -11.94646 -11.68964 -11.54395 -11.31413 -11.07977 -10.74133 -9.95301 -9.89029 -9.69305 -9.29169 -6.88187 -0.96058 -0.39526 0.60454 0.63944 1.27330 1.62421 1.71387 1.81998 2.07983 2.19527 2.33006 2.47745 2.62863 3.15404 3.18444 3.46457 3.47905 3.87223 3.88843 3.92889 4.32255 4.46529 4.49900 4.60036 4.65902 4.71364 5.02614 5.12881 5.29478 5.34600 5.48658 5.50312 5.70210 5.95941 6.20409 6.28103 6.59357 6.90702 7.50716 7.92053 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.026149 B = 0.004281 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.545825 B = 6539.683507 C = 7166.102731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.015 3.985 3 Si 1.189 2.811 4 H -0.331 1.331 5 H -0.275 1.275 6 H -0.291 1.291 7 C -0.510 4.510 8 H 0.062 0.938 9 C 0.240 3.760 10 C -0.249 4.249 11 C 0.015 3.985 12 C -0.123 4.123 13 C 0.035 3.965 14 C -0.190 4.190 15 C 0.553 3.447 16 O -0.537 6.537 17 O -0.494 6.494 18 C 0.209 3.791 19 N -0.529 5.529 20 C 0.337 3.663 21 F -0.111 7.111 22 C -0.271 4.271 23 C 0.140 3.860 24 N -0.591 5.591 25 H 0.280 0.720 26 H 0.101 0.899 27 H 0.168 0.832 28 H 0.441 0.559 29 H 0.224 0.776 30 H 0.149 0.851 31 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.117 -10.901 -3.139 23.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.201 4.201 3 Si 1.021 2.979 4 H -0.265 1.265 5 H -0.202 1.202 6 H -0.219 1.219 7 C -0.542 4.542 8 H 0.080 0.920 9 C 0.116 3.884 10 C -0.272 4.272 11 C 0.008 3.992 12 C -0.127 4.127 13 C 0.010 3.990 14 C -0.194 4.194 15 C 0.397 3.603 16 O -0.429 6.429 17 O -0.308 6.308 18 C 0.050 3.950 19 N -0.243 5.243 20 C 0.186 3.814 21 F -0.090 7.090 22 C -0.293 4.293 23 C -0.019 4.019 24 N -0.310 5.310 25 H 0.091 0.909 26 H 0.119 0.881 27 H 0.186 0.814 28 H 0.304 0.696 29 H 0.240 0.760 30 H 0.167 0.833 31 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 18.779 -9.123 -2.342 21.009 hybrid contribution 0.154 -2.080 -0.740 2.213 sum 18.934 -11.203 -3.082 22.215 Atomic orbital electron populations 1.70672 1.08549 1.32648 1.33273 1.28641 0.95528 1.08037 0.87892 0.81372 0.69876 0.67318 0.79301 1.26503 1.20191 1.21935 1.20781 0.91466 0.95825 1.46132 0.92017 1.18627 0.93724 0.87991 0.88071 1.21689 0.93471 0.98043 1.13955 1.18569 0.91809 0.92057 0.96735 1.19417 0.99372 0.93543 1.00336 1.21806 0.88081 0.97822 0.91318 1.20070 0.99596 0.96536 1.03161 1.20000 0.80672 0.80389 0.79275 1.90945 1.67278 1.40424 1.44216 1.84462 1.47718 1.34954 1.63681 1.23613 0.87840 0.98898 0.84612 1.67198 1.09384 1.24634 1.23069 1.18686 0.85210 0.90149 0.87366 1.91659 1.54766 1.96294 1.66259 1.21654 1.00807 0.91451 1.15397 1.22815 0.88676 0.99143 0.91285 1.66506 1.11291 1.28010 1.25187 0.90936 0.88129 0.81422 0.69565 0.76018 0.83293 0.81007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.83 13.65 21.84 0.30 -46.53 16 2 C 0.02 0.86 5.52 85.29 0.47 1.33 16 3 Si 1.19 57.40 25.56 68.60 1.75 59.15 16 4 H -0.33 -15.73 7.11 99.48 0.71 -15.02 16 5 H -0.27 -12.88 6.67 99.48 0.66 -12.22 16 6 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 7 C -0.51 -28.83 9.58 23.49 0.23 -28.61 16 8 H 0.06 3.59 8.05 -2.91 -0.02 3.57 16 9 C 0.24 12.45 6.39 40.20 0.26 12.71 16 10 C -0.25 -11.52 8.72 23.08 0.20 -11.32 16 11 C 0.02 0.58 5.35 -19.88 -0.11 0.47 16 12 C -0.12 -3.80 5.52 -19.94 -0.11 -3.91 16 13 C 0.03 0.85 9.24 22.95 0.21 1.06 16 14 C -0.19 -3.67 5.88 -20.04 -0.12 -3.79 16 15 C 0.55 9.11 8.28 70.30 0.58 9.69 16 16 O -0.54 -12.45 17.20 19.88 0.34 -12.10 16 17 O -0.49 -3.89 12.69 -56.37 -0.72 -4.61 16 18 C 0.21 3.74 10.78 85.07 0.92 4.66 16 19 N -0.53 -13.74 10.34 -194.81 -2.01 -15.76 16 20 C 0.34 10.61 8.32 85.04 0.71 11.31 16 21 F -0.11 -4.06 15.97 44.97 0.72 -3.34 16 22 C -0.27 -9.47 9.68 22.77 0.22 -9.25 16 23 C 0.14 5.45 11.17 84.80 0.95 6.39 16 24 N -0.59 -28.61 4.54 -189.37 -0.86 -29.46 16 25 H 0.28 15.37 8.72 -92.71 -0.81 14.56 16 26 H 0.10 4.66 7.85 -2.91 -0.02 4.64 16 27 H 0.17 3.90 7.73 -2.91 -0.02 3.88 16 28 H 0.44 -0.45 9.11 -74.06 -0.67 -1.13 16 29 H 0.22 2.07 7.61 -2.91 -0.02 2.05 16 30 H 0.15 4.02 8.06 -2.91 -0.02 4.00 16 31 H 0.17 5.24 8.06 -2.91 -0.02 5.22 16 Total: -1.00 -69.80 290.43 4.38 -65.42 By element: Atomic # 1 Polarization: -3.98 SS G_CDS: 0.46 Total: -3.52 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: 4.40 Total: -9.24 kcal Atomic # 7 Polarization: -89.18 SS G_CDS: -2.58 Total: -91.75 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -0.37 Total: -16.71 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.72 Total: -3.34 kcal Atomic # 14 Polarization: 57.40 SS G_CDS: 1.75 Total: 59.15 kcal Total: -69.80 4.38 -65.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244763767.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.259 kcal (2) G-P(sol) polarization free energy of solvation -69.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds