Wall clock time and date at job start Tue Mar 31 2020 05:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30685 * 1 3 3 Si 1.86807 * 120.00196 * 2 1 4 4 H 1.48494 * 109.47079 * 240.00602 * 3 2 1 5 5 H 1.48505 * 109.46590 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47054 * 120.00555 * 3 2 1 7 7 C 1.40173 * 119.99937 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99797 * 194.15295 * 7 2 1 9 9 C 1.40910 * 120.00260 * 14.15013 * 7 2 1 10 10 C 1.41126 * 121.10809 * 24.42893 * 9 7 2 11 11 C 1.36472 * 119.10868 * 180.02562 * 10 9 7 12 12 N 1.32215 * 121.51409 * 359.97438 * 11 10 9 13 13 C 1.31662 * 122.50545 * 359.69872 * 12 11 10 14 14 C 1.39329 * 120.65702 * 0.59391 * 13 12 11 15 15 C 1.47822 * 120.78386 * 179.70429 * 14 13 12 16 16 C 1.39680 * 120.51115 * 64.71998 * 15 14 13 17 17 C 1.39857 * 118.17758 * 179.97438 * 16 15 14 18 18 C 1.47639 * 120.45628 * 180.02562 * 17 16 15 19 19 O 1.21481 * 120.00238 * 359.97393 * 18 17 16 20 20 O 1.34716 * 119.99917 * 179.97438 * 18 17 16 21 21 C 1.39743 * 119.08104 * 0.02562 * 17 16 15 22 22 N 1.31706 * 120.93393 * 0.27341 * 21 17 16 23 23 C 1.31997 * 122.01003 * 359.43300 * 22 21 17 24 24 F 1.35107 * 119.59207 * 180.31333 * 23 22 21 25 25 H 0.96998 * 120.00058 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.44238 * 0.02562 * 10 9 7 27 27 H 1.07998 * 119.24042 * 179.97438 * 11 10 9 28 28 H 1.08002 * 119.67475 * 180.29623 * 13 12 11 29 29 H 1.08007 * 120.90720 * 359.95583 * 16 15 14 30 30 H 0.96700 * 117.00238 * 179.97438 * 20 18 17 31 31 H 1.08001 * 119.53429 * 179.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2758 2.7465 0.0006 6 1 3.0948 1.6963 1.2124 7 6 2.0077 -1.2139 -0.0005 8 1 3.0631 -1.2282 0.2281 9 6 1.3353 -2.4156 -0.2994 10 6 0.1548 -2.4177 -1.0728 11 6 -0.4636 -3.6052 -1.3372 12 7 0.0183 -4.7508 -0.8862 13 6 1.1177 -4.8210 -0.1650 14 6 1.8238 -3.6670 0.1679 15 6 3.0548 -3.7420 0.9829 16 6 4.1909 -4.3907 0.4935 17 6 5.3289 -4.4321 1.3054 18 6 6.5576 -5.1042 0.8380 19 8 6.5846 -5.6266 -0.2584 20 8 7.6487 -5.1381 1.6273 21 6 5.2870 -3.8285 2.5650 22 7 4.1942 -3.2311 2.9934 23 6 3.0998 -3.1635 2.2586 24 9 2.0080 -2.5330 2.7442 25 1 -0.4850 0.8400 0.0004 26 1 -0.2537 -1.4920 -1.4503 27 1 -1.3673 -3.6092 -1.9285 28 1 1.4730 -5.7822 0.1759 29 1 4.1903 -4.8482 -0.4849 30 1 8.4292 -5.5899 1.2783 31 1 6.1615 -3.8565 3.1981 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244763903.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:30 Heat of formation + Delta-G solvation = -74.234342 kcal Electronic energy + Delta-G solvation = -21938.432134 eV Core-core repulsion = 18291.960777 eV Total energy + Delta-G solvation = -3646.471357 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.070 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.38497 -40.53013 -39.25610 -38.25297 -36.15691 -34.38295 -33.19036 -31.82400 -30.42192 -28.79395 -26.21801 -24.82883 -23.88765 -21.88105 -21.67243 -20.56061 -18.32256 -17.83454 -17.61783 -17.04167 -16.57219 -15.94003 -15.67275 -15.32653 -14.74689 -14.59115 -14.40486 -13.88263 -13.26309 -13.17522 -12.81883 -12.74394 -12.70528 -12.46667 -12.28705 -11.64976 -11.58657 -11.41668 -11.22306 -10.84080 -10.51730 -10.14426 -9.80874 -9.61494 -9.54125 -8.80524 -8.20483 -8.02115 -7.71777 -7.04778 -4.84443 0.58751 1.30509 2.40365 2.58744 2.68060 2.90747 2.92995 2.93397 3.11973 3.69951 3.82658 3.87792 4.45296 4.76243 4.89216 4.95522 5.24604 5.38943 5.65666 5.77431 5.86020 6.10036 6.19834 6.26944 6.37888 6.66431 6.70453 6.83363 6.93629 7.13006 7.29283 7.59170 7.74695 7.85274 7.86406 8.20529 8.47892 8.50721 9.44483 9.82161 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.014827 B = 0.006430 C = 0.005321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.035334 B = 4353.373776 C = 5261.112214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.080 3.920 3 Si 0.911 3.089 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.436 4.436 8 H 0.078 0.922 9 C 0.152 3.848 10 C -0.204 4.204 11 C 0.085 3.915 12 N -0.576 5.576 13 C 0.143 3.857 14 C -0.254 4.254 15 C -0.049 4.049 16 C 0.005 3.995 17 C -0.203 4.203 18 C 0.539 3.461 19 O -0.513 6.513 20 O -0.513 6.513 21 C 0.174 3.826 22 N -0.527 5.527 23 C 0.354 3.646 24 F -0.087 7.087 25 H 0.289 0.711 26 H 0.131 0.869 27 H 0.121 0.879 28 H 0.122 0.878 29 H 0.153 0.847 30 H 0.413 0.587 31 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.392 -2.998 2.865 10.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.185 1.185 7 C -0.466 4.466 8 H 0.096 0.904 9 C 0.144 3.856 10 C -0.226 4.226 11 C -0.061 4.061 12 N -0.290 5.290 13 C -0.016 4.016 14 C -0.261 4.261 15 C -0.054 4.054 16 C -0.020 4.020 17 C -0.207 4.207 18 C 0.383 3.617 19 O -0.403 6.403 20 O -0.325 6.325 21 C 0.015 3.985 22 N -0.241 5.241 23 C 0.202 3.798 24 F -0.066 7.066 25 H 0.100 0.900 26 H 0.149 0.851 27 H 0.139 0.861 28 H 0.140 0.860 29 H 0.171 0.829 30 H 0.272 0.728 31 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 8.222 -3.107 3.323 9.397 hybrid contribution 1.101 1.146 -0.633 1.711 sum 9.323 -1.961 2.690 9.900 Atomic orbital electron populations 1.69700 1.07773 1.30276 1.31533 1.26016 0.94841 1.01767 0.91586 0.86286 0.80329 0.79502 0.80486 1.18386 1.19734 1.18486 1.19491 0.96842 0.90627 1.39606 0.90384 1.17652 0.90439 0.90742 0.86717 1.21981 0.99374 0.98491 1.02748 1.21772 0.98085 0.88769 0.97523 1.67348 1.14969 1.29303 1.17393 1.22040 0.90848 0.95363 0.93394 1.19087 0.99679 0.95810 1.11502 1.19324 0.95589 0.97760 0.92684 1.21857 0.88618 0.92654 0.98826 1.19898 0.93375 1.08693 0.98725 1.20556 0.82849 0.76423 0.81852 1.90900 1.83791 1.43928 1.21645 1.84547 1.23981 1.73918 1.50047 1.22720 0.94408 0.89308 0.92070 1.66997 0.99696 1.20348 1.37062 1.18822 0.82823 0.89741 0.88421 1.91692 1.49063 1.78095 1.87731 0.89996 0.85095 0.86143 0.86003 0.82892 0.72811 0.80942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.25 10.80 55.56 0.60 -17.65 16 2 C 0.08 1.86 5.25 -17.31 -0.09 1.77 16 3 Si 0.91 17.60 29.58 -169.99 -5.03 12.57 16 4 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 5 H -0.27 -5.08 7.11 56.52 0.40 -4.67 16 6 H -0.26 -5.10 7.11 56.52 0.40 -4.69 16 7 C -0.44 -10.65 7.70 -37.84 -0.29 -10.94 16 8 H 0.08 1.88 7.18 -52.49 -0.38 1.51 16 9 C 0.15 3.76 5.51 -106.26 -0.59 3.17 16 10 C -0.20 -4.95 8.73 -39.12 -0.34 -5.29 16 11 C 0.08 1.95 11.09 -18.02 -0.20 1.75 16 12 N -0.58 -13.39 10.32 -13.36 -0.14 -13.53 16 13 C 0.14 3.15 10.92 -17.22 -0.19 2.96 16 14 C -0.25 -5.75 5.09 -104.04 -0.53 -6.27 16 15 C -0.05 -0.98 4.49 -104.72 -0.47 -1.45 16 16 C 0.01 0.09 9.44 -38.44 -0.36 -0.27 16 17 C -0.20 -3.03 5.88 -104.89 -0.62 -3.65 16 18 C 0.54 7.16 8.28 34.57 0.29 7.44 16 19 O -0.51 -8.21 17.19 -19.25 -0.33 -8.54 16 20 O -0.51 -4.71 12.69 -40.54 -0.51 -5.23 16 21 C 0.17 2.52 10.78 -17.04 -0.18 2.34 16 22 N -0.53 -9.43 10.34 -12.83 -0.13 -9.56 16 23 C 0.35 7.15 7.73 -16.77 -0.13 7.02 16 24 F -0.09 -1.96 16.25 2.25 0.04 -1.93 16 25 H 0.29 6.20 8.29 -40.82 -0.34 5.86 16 26 H 0.13 3.21 6.13 -52.49 -0.32 2.89 16 27 H 0.12 2.43 8.06 -52.49 -0.42 2.00 16 28 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 29 H 0.15 2.55 7.73 -52.48 -0.41 2.15 16 30 H 0.41 1.85 9.11 45.56 0.42 2.26 16 31 H 0.17 1.89 7.60 -52.49 -0.40 1.49 16 LS Contribution 291.55 15.07 4.39 4.39 Total: -1.00 -28.85 291.55 -5.89 -34.73 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -1.07 Total: 6.15 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -3.70 Total: -1.42 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 0.33 Total: -40.74 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -0.85 Total: -13.77 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -5.03 Total: 12.57 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.85 -5.89 -34.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244763903.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.501 kcal (2) G-P(sol) polarization free energy of solvation -28.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds