Wall clock time and date at job start Tue Mar 31 2020 05:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30685 * 1 3 3 Si 1.86807 * 120.00196 * 2 1 4 4 H 1.48494 * 109.47079 * 240.00602 * 3 2 1 5 5 H 1.48505 * 109.46590 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47054 * 120.00555 * 3 2 1 7 7 C 1.40173 * 119.99937 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99797 * 194.15295 * 7 2 1 9 9 C 1.40910 * 120.00260 * 14.15013 * 7 2 1 10 10 C 1.41126 * 121.10809 * 24.42893 * 9 7 2 11 11 C 1.36472 * 119.10868 * 180.02562 * 10 9 7 12 12 N 1.32215 * 121.51409 * 359.97438 * 11 10 9 13 13 C 1.31662 * 122.50545 * 359.69872 * 12 11 10 14 14 C 1.39329 * 120.65702 * 0.59391 * 13 12 11 15 15 C 1.47822 * 120.78386 * 179.70429 * 14 13 12 16 16 C 1.39680 * 120.51115 * 64.71998 * 15 14 13 17 17 C 1.39857 * 118.17758 * 179.97438 * 16 15 14 18 18 C 1.47639 * 120.45628 * 180.02562 * 17 16 15 19 19 O 1.21481 * 120.00238 * 359.97393 * 18 17 16 20 20 O 1.34716 * 119.99917 * 179.97438 * 18 17 16 21 21 C 1.39743 * 119.08104 * 0.02562 * 17 16 15 22 22 N 1.31706 * 120.93393 * 0.27341 * 21 17 16 23 23 C 1.31997 * 122.01003 * 359.43300 * 22 21 17 24 24 F 1.35107 * 119.59207 * 180.31333 * 23 22 21 25 25 H 0.96998 * 120.00058 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.44238 * 0.02562 * 10 9 7 27 27 H 1.07998 * 119.24042 * 179.97438 * 11 10 9 28 28 H 1.08002 * 119.67475 * 180.29623 * 13 12 11 29 29 H 1.08007 * 120.90720 * 359.95583 * 16 15 14 30 30 H 0.96700 * 117.00238 * 179.97438 * 20 18 17 31 31 H 1.08001 * 119.53429 * 179.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2758 2.7465 0.0006 6 1 3.0948 1.6963 1.2124 7 6 2.0077 -1.2139 -0.0005 8 1 3.0631 -1.2282 0.2281 9 6 1.3353 -2.4156 -0.2994 10 6 0.1548 -2.4177 -1.0728 11 6 -0.4636 -3.6052 -1.3372 12 7 0.0183 -4.7508 -0.8862 13 6 1.1177 -4.8210 -0.1650 14 6 1.8238 -3.6670 0.1679 15 6 3.0548 -3.7420 0.9829 16 6 4.1909 -4.3907 0.4935 17 6 5.3289 -4.4321 1.3054 18 6 6.5576 -5.1042 0.8380 19 8 6.5846 -5.6266 -0.2584 20 8 7.6487 -5.1381 1.6273 21 6 5.2870 -3.8285 2.5650 22 7 4.1942 -3.2311 2.9934 23 6 3.0998 -3.1635 2.2586 24 9 2.0080 -2.5330 2.7442 25 1 -0.4850 0.8400 0.0004 26 1 -0.2537 -1.4920 -1.4503 27 1 -1.3673 -3.6092 -1.9285 28 1 1.4730 -5.7822 0.1759 29 1 4.1903 -4.8482 -0.4849 30 1 8.4292 -5.5899 1.2783 31 1 6.1615 -3.8565 3.1981 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244763903.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:30 Heat of formation + Delta-G solvation = -92.869920 kcal Electronic energy + Delta-G solvation = -21939.240233 eV Core-core repulsion = 18291.960777 eV Total energy + Delta-G solvation = -3647.279456 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.070 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.99262 -41.72871 -40.58429 -39.87335 -37.10513 -36.14563 -34.70367 -33.21099 -32.16713 -30.41410 -27.99143 -26.08743 -25.34720 -23.46983 -23.26583 -21.96620 -19.60621 -19.40979 -19.06983 -18.22648 -17.95225 -17.55372 -17.09533 -16.60048 -16.38987 -16.17543 -16.07828 -15.20269 -14.71896 -14.49983 -14.42969 -14.21852 -14.16371 -14.07423 -13.91229 -13.28878 -13.09502 -12.83926 -12.58600 -12.13125 -12.02581 -11.80625 -11.38880 -11.14723 -10.95548 -10.30713 -10.00342 -9.77808 -9.43012 -8.77895 -6.66559 -0.72690 -0.07698 0.73984 0.94006 1.32439 1.38108 1.43008 1.50941 1.92421 2.10003 2.45518 2.53632 2.68647 3.44569 3.56492 3.60111 3.66825 3.96128 4.15753 4.25192 4.44862 4.63245 4.78741 4.84761 4.93717 4.95842 5.17086 5.34442 5.40714 5.49097 5.54287 5.80157 6.07346 6.39044 6.44071 6.68322 6.70636 6.96478 7.64827 8.11974 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.014827 B = 0.006430 C = 0.005321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.035334 B = 4353.373776 C = 5261.112214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.044 3.956 3 Si 0.974 3.026 4 H -0.255 1.255 5 H -0.259 1.259 6 H -0.263 1.263 7 C -0.457 4.457 8 H 0.072 0.928 9 C 0.125 3.875 10 C -0.226 4.226 11 C 0.082 3.918 12 N -0.588 5.588 13 C 0.134 3.866 14 C -0.254 4.254 15 C -0.071 4.071 16 C 0.012 3.988 17 C -0.194 4.194 18 C 0.554 3.446 19 O -0.541 6.541 20 O -0.493 6.493 21 C 0.192 3.808 22 N -0.535 5.535 23 C 0.333 3.667 24 F -0.112 7.112 25 H 0.297 0.703 26 H 0.122 0.878 27 H 0.144 0.856 28 H 0.149 0.851 29 H 0.155 0.845 30 H 0.439 0.561 31 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.945 -3.283 3.537 12.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.176 4.176 3 Si 0.794 3.206 4 H -0.179 1.179 5 H -0.183 1.183 6 H -0.188 1.188 7 C -0.486 4.486 8 H 0.090 0.910 9 C 0.117 3.883 10 C -0.248 4.248 11 C -0.065 4.065 12 N -0.302 5.302 13 C -0.025 4.025 14 C -0.260 4.260 15 C -0.075 4.075 16 C -0.013 4.013 17 C -0.198 4.198 18 C 0.398 3.602 19 O -0.433 6.433 20 O -0.308 6.308 21 C 0.033 3.967 22 N -0.249 5.249 23 C 0.182 3.818 24 F -0.090 7.090 25 H 0.108 0.892 26 H 0.140 0.860 27 H 0.162 0.838 28 H 0.166 0.834 29 H 0.173 0.827 30 H 0.302 0.698 31 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 10.802 -3.418 4.011 12.019 hybrid contribution 0.478 1.096 -0.777 1.426 sum 11.280 -2.322 3.234 11.962 Atomic orbital electron populations 1.69734 1.08924 1.31506 1.31927 1.26772 0.95532 1.04463 0.90836 0.85358 0.79192 0.75870 0.80221 1.17933 1.18313 1.18766 1.19589 0.96684 0.91489 1.40866 0.90961 1.18028 0.91026 0.91963 0.87238 1.21989 1.00207 0.98666 1.03958 1.22104 0.98657 0.88359 0.97382 1.67413 1.15545 1.29287 1.17975 1.22479 0.90483 0.96470 0.93039 1.19328 1.00574 0.95220 1.10847 1.19187 0.95702 0.99911 0.92718 1.21865 0.88626 0.91670 0.99148 1.20036 0.93563 1.07824 0.98342 1.20072 0.83131 0.75560 0.81413 1.90914 1.84345 1.45085 1.22964 1.84473 1.23854 1.73635 1.48793 1.23447 0.94299 0.86821 0.92093 1.67079 0.99813 1.21075 1.36951 1.18909 0.83165 0.90725 0.89005 1.91621 1.50488 1.78876 1.88061 0.89209 0.86033 0.83843 0.83400 0.82702 0.69825 0.76554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.77 10.80 21.86 0.24 -38.53 16 2 C 0.04 2.06 5.25 85.33 0.45 2.51 16 3 Si 0.97 36.15 29.58 68.60 2.03 38.18 16 4 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 5 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 6 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 7 C -0.46 -22.96 7.70 23.39 0.18 -22.78 16 8 H 0.07 3.59 7.18 -2.91 -0.02 3.57 16 9 C 0.13 6.39 5.51 -20.92 -0.12 6.27 16 10 C -0.23 -11.36 8.73 22.57 0.20 -11.17 16 11 C 0.08 3.83 11.09 84.22 0.93 4.76 16 12 N -0.59 -27.49 10.32 -196.19 -2.02 -29.52 16 13 C 0.13 5.92 10.92 84.98 0.93 6.85 16 14 C -0.25 -11.70 5.09 -19.49 -0.10 -11.80 16 15 C -0.07 -2.83 4.49 -19.93 -0.09 -2.92 16 16 C 0.01 0.40 9.44 23.01 0.22 0.62 16 17 C -0.19 -5.25 5.88 -20.04 -0.12 -5.37 16 18 C 0.55 12.69 8.28 70.30 0.58 13.28 16 19 O -0.54 -15.84 17.19 19.90 0.34 -15.50 16 20 O -0.49 -6.60 12.69 -56.26 -0.71 -7.32 16 21 C 0.19 4.93 10.78 85.08 0.92 5.85 16 22 N -0.53 -18.31 10.34 -194.50 -2.01 -20.32 16 23 C 0.33 13.52 7.73 85.13 0.66 14.17 16 24 F -0.11 -5.19 16.25 44.97 0.73 -4.46 16 25 H 0.30 12.96 8.29 -92.71 -0.77 12.19 16 26 H 0.12 6.22 6.13 -2.91 -0.02 6.21 16 27 H 0.14 5.82 8.06 -2.91 -0.02 5.79 16 28 H 0.15 5.60 8.06 -2.91 -0.02 5.58 16 29 H 0.16 5.05 7.73 -2.91 -0.02 5.03 16 30 H 0.44 1.68 9.11 -74.06 -0.67 1.00 16 31 H 0.22 3.59 7.60 -2.91 -0.02 3.57 16 Total: -1.00 -63.91 291.55 3.77 -60.13 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.55 Total: 17.08 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: 4.64 Total: 0.27 kcal Atomic # 7 Polarization: -84.58 SS G_CDS: -3.80 Total: -88.37 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.37 Total: -22.82 kcal Atomic # 9 Polarization: -5.19 SS G_CDS: 0.73 Total: -4.46 kcal Atomic # 14 Polarization: 36.15 SS G_CDS: 2.03 Total: 38.18 kcal Total: -63.91 3.77 -60.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244763903.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.738 kcal (2) G-P(sol) polarization free energy of solvation -63.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds