Wall clock time and date at job start Tue Mar 31 2020 06:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38295 * 120.84754 * 2 1 4 4 C 1.38520 * 119.30116 * 179.72300 * 3 2 1 5 5 Cl 1.73598 * 119.47586 * 180.29390 * 4 3 2 6 6 N 1.32064 * 121.05161 * 0.27184 * 4 3 2 7 7 C 1.31667 * 121.85991 * 0.02562 * 6 4 3 8 8 C 1.39605 * 120.57447 * 359.97438 * 7 6 4 9 9 C 1.47939 * 120.54773 * 180.02562 * 8 7 6 10 10 C 1.39915 * 119.45278 * 6.30902 * 9 8 7 11 11 C 1.36593 * 119.46619 * 180.02562 * 10 9 8 12 12 C 1.41306 * 118.41943 * 359.97438 * 11 10 9 13 13 C 1.41042 * 120.55641 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00377 * 154.37650 * 13 12 11 15 15 C 1.40029 * 119.99983 * 334.37104 * 13 12 11 16 16 N 1.30799 * 119.99736 * 342.58020 * 15 13 12 17 17 Si 1.86801 * 120.00081 * 162.57887 * 15 13 12 18 18 H 1.48498 * 109.46874 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47224 * 120.00166 * 17 15 13 20 20 H 1.48503 * 109.47002 * 240.00080 * 17 15 13 21 21 C 1.40956 * 118.88991 * 0.02562 * 12 11 10 22 22 C 1.50704 * 119.79596 * 180.02562 * 21 12 11 23 23 N 1.31265 * 120.40403 * 359.72705 * 21 12 11 24 24 H 1.08994 * 109.47041 * 96.79014 * 1 2 3 25 25 H 1.09000 * 109.47278 * 216.79391 * 1 2 3 26 26 H 1.09002 * 109.47075 * 336.79190 * 1 2 3 27 27 H 1.08003 * 120.35013 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.71501 * 179.97438 * 7 6 4 29 29 H 1.07998 * 120.26429 * 359.97338 * 10 9 8 30 30 H 1.08003 * 120.78969 * 179.97438 * 11 10 9 31 31 H 0.96998 * 119.99279 * 179.97438 * 16 15 13 32 32 H 1.09006 * 109.46520 * 90.00075 * 22 21 12 33 33 H 1.08996 * 109.47266 * 209.99845 * 22 21 12 34 34 H 1.08994 * 109.47268 * 330.00467 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2161 1.1873 0.0000 4 6 3.6008 1.1499 0.0058 5 17 4.4954 2.6376 0.0136 6 7 4.2512 0.0006 0.0060 7 6 3.6203 -1.1550 0.0002 8 6 2.2250 -1.2023 -0.0059 9 6 1.5167 -2.5011 -0.0119 10 6 2.2498 -3.6852 0.1225 11 6 1.5962 -4.8845 0.1165 12 6 0.1903 -4.8835 -0.0260 13 6 -0.5301 -6.0960 -0.0376 14 1 -1.5667 -6.1112 0.2651 15 6 0.0986 -7.2801 -0.4417 16 7 1.2154 -7.2288 -1.1206 17 14 -0.6576 -8.9331 -0.0113 18 1 -1.9108 -8.7192 0.7562 19 1 -0.9618 -9.6783 -1.2592 20 1 0.2989 -9.7157 0.8120 21 6 -0.4801 -3.6504 -0.1565 22 6 -1.9791 -3.6255 -0.3092 23 7 0.1928 -2.5235 -0.1400 24 1 -0.3633 -0.1215 -1.0204 25 1 -0.3634 -0.8229 0.6155 26 1 -0.3633 0.9445 0.4050 27 1 1.6958 2.1337 -0.0004 28 1 4.1870 -2.0744 0.0001 29 1 3.3240 -3.6512 0.2293 30 1 2.1409 -5.8116 0.2183 31 1 1.6511 -8.0491 -1.4002 32 1 -2.4436 -3.5675 0.6753 33 1 -2.2698 -2.7568 -0.8998 34 1 -2.3082 -4.5342 -0.8131 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244913932.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:41 Heat of formation + Delta-G solvation = 42.079835 kcal Electronic energy + Delta-G solvation = -19529.685099 eV Core-core repulsion = 16452.426973 eV Total energy + Delta-G solvation = -3077.258126 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.99908 -38.49957 -36.36914 -34.64877 -33.48503 -32.48862 -30.98432 -29.87237 -27.63263 -27.06194 -25.26465 -23.27706 -21.98200 -20.81970 -20.35058 -17.65806 -16.46068 -16.38837 -15.77127 -15.44705 -14.69375 -14.35799 -14.25253 -13.61361 -13.32933 -13.07426 -12.54571 -12.41008 -12.25878 -12.13264 -11.77827 -11.66951 -11.55716 -11.45283 -11.19225 -11.15199 -11.08942 -10.89089 -10.72898 -10.04011 -9.69161 -9.23975 -9.14878 -8.79484 -8.41868 -8.10927 -7.43842 -7.13516 -4.70895 1.09519 1.56956 2.12353 2.47595 2.76872 2.86062 2.90842 2.99317 3.61536 3.99456 4.41808 4.80950 5.09189 5.22687 5.32535 5.36969 5.44541 5.71897 5.99248 6.02658 6.15644 6.20591 6.29047 6.39194 6.43865 6.49372 6.62462 6.68497 6.70505 6.87383 6.96277 7.04621 7.13745 7.48136 7.61486 7.69352 8.11433 8.14625 8.33334 8.44062 9.35457 9.70686 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.034917 B = 0.003734 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.699968 B = 7496.778137 C = 8215.868263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.032 4.032 3 C -0.151 4.151 4 C 0.140 3.860 5 Cl -0.057 7.057 6 N -0.479 5.479 7 C 0.099 3.901 8 C -0.024 4.024 9 C -0.008 4.008 10 C -0.120 4.120 11 C -0.141 4.141 12 C 0.076 3.924 13 C -0.422 4.422 14 H 0.092 0.908 15 C 0.071 3.929 16 N -0.768 5.768 17 Si 0.915 3.085 18 H -0.255 1.255 19 H -0.270 1.270 20 H -0.268 1.268 21 C 0.008 3.992 22 C -0.073 4.073 23 N -0.436 5.436 24 H 0.073 0.927 25 H 0.107 0.893 26 H 0.044 0.956 27 H 0.135 0.865 28 H 0.162 0.838 29 H 0.103 0.897 30 H 0.126 0.874 31 H 0.289 0.711 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.676 6.021 1.572 6.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.041 4.041 3 C -0.172 4.172 4 C -0.023 4.023 5 Cl -0.029 7.029 6 N -0.189 5.189 7 C -0.060 4.060 8 C -0.027 4.027 9 C -0.141 4.141 10 C -0.140 4.140 11 C -0.166 4.166 12 C 0.071 3.929 13 C -0.450 4.450 14 H 0.110 0.890 15 C -0.151 4.151 16 N -0.390 5.390 17 Si 0.738 3.262 18 H -0.179 1.179 19 H -0.195 1.195 20 H -0.193 1.193 21 C -0.139 4.139 22 C -0.130 4.130 23 N -0.144 5.144 24 H 0.091 0.909 25 H 0.125 0.875 26 H 0.063 0.937 27 H 0.153 0.847 28 H 0.179 0.821 29 H 0.121 0.879 30 H 0.144 0.856 31 H 0.100 0.900 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.082 6.800 1.368 6.937 hybrid contribution -0.251 -1.485 0.108 1.510 sum -0.169 5.315 1.476 5.519 Atomic orbital electron populations 1.20998 0.88985 1.02128 1.03733 1.20410 0.97641 0.90771 0.95252 1.21555 0.92158 0.99390 1.04129 1.21360 0.88494 0.87851 1.04609 1.98347 1.77237 1.30378 1.96948 1.66796 1.41353 0.97430 1.13364 1.22667 0.91113 0.94282 0.97909 1.19648 0.93272 0.92979 0.96819 1.18419 0.89405 0.89815 1.16460 1.21250 0.98625 0.93301 1.00866 1.21269 0.94842 0.96706 1.03733 1.18444 0.92673 0.93242 0.88544 1.19815 0.99006 0.91151 1.35073 0.88979 1.26152 0.94413 1.02281 0.92283 1.69785 1.14928 1.31641 1.22685 0.86119 0.80516 0.79977 0.79548 1.17873 1.19514 1.19288 1.21072 0.95528 0.88203 1.09092 1.20274 0.90853 1.01471 1.00417 1.66932 1.07452 1.30059 1.09986 0.90878 0.87483 0.93735 0.84697 0.82086 0.87939 0.85637 0.89972 0.93193 0.93010 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.65 8.66 36.01 0.31 -1.34 16 2 C -0.03 -0.57 5.95 -103.93 -0.62 -1.19 16 3 C -0.15 -2.40 9.54 -39.46 -0.38 -2.78 16 4 C 0.14 2.36 7.27 -17.35 -0.13 2.24 16 5 Cl -0.06 -0.82 29.10 -51.86 -1.51 -2.33 16 6 N -0.48 -8.73 10.32 -9.99 -0.10 -8.83 16 7 C 0.10 1.80 10.58 -17.11 -0.18 1.62 16 8 C -0.02 -0.47 5.89 -104.74 -0.62 -1.08 16 9 C -0.01 -0.17 6.69 -82.75 -0.55 -0.72 16 10 C -0.12 -2.58 9.38 -39.55 -0.37 -2.95 16 11 C -0.14 -3.29 8.73 -39.01 -0.34 -3.63 16 12 C 0.08 1.80 5.57 -106.64 -0.59 1.20 16 13 C -0.42 -9.61 8.12 -37.85 -0.31 -9.91 16 14 H 0.09 1.97 6.88 -52.49 -0.36 1.61 16 15 C 0.07 1.53 5.16 -17.32 -0.09 1.44 16 16 N -0.77 -17.39 11.04 55.55 0.61 -16.78 16 17 Si 0.92 16.14 29.59 -169.99 -5.03 11.11 16 18 H -0.26 -4.45 7.11 56.52 0.40 -4.05 16 19 H -0.27 -4.74 7.11 56.52 0.40 -4.33 16 20 H -0.27 -4.71 7.11 56.52 0.40 -4.31 16 21 C 0.01 0.17 6.86 -81.80 -0.56 -0.39 16 22 C -0.07 -1.34 9.58 36.01 0.34 -1.00 16 23 N -0.44 -9.49 6.26 -5.39 -0.03 -9.52 16 24 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.11 1.94 5.78 -51.93 -0.30 1.64 16 26 H 0.04 0.59 8.06 -51.93 -0.42 0.17 16 27 H 0.14 1.77 8.06 -52.48 -0.42 1.35 16 28 H 0.16 2.65 6.22 -52.49 -0.33 2.32 16 29 H 0.10 1.92 6.22 -52.49 -0.33 1.60 16 30 H 0.13 2.97 6.33 -52.48 -0.33 2.63 16 31 H 0.29 5.89 8.29 -40.82 -0.34 5.55 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 1.24 6.77 -51.93 -0.35 0.88 16 LS Contribution 302.65 15.07 4.56 4.56 Total: -1.00 -24.74 302.65 -8.82 -33.56 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -3.24 Total: 6.72 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -4.08 Total: -18.50 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: 0.48 Total: -35.13 kcal Atomic # 14 Polarization: 16.14 SS G_CDS: -5.03 Total: 11.11 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.51 Total: -2.33 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -24.74 -8.82 -33.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244913932.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.644 kcal (2) G-P(sol) polarization free energy of solvation -24.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds