Wall clock time and date at job start Tue Mar 31 2020 06:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38295 * 120.84754 * 2 1 4 4 C 1.38520 * 119.30116 * 179.72300 * 3 2 1 5 5 Cl 1.73598 * 119.47586 * 180.29390 * 4 3 2 6 6 N 1.32064 * 121.05161 * 0.27184 * 4 3 2 7 7 C 1.31667 * 121.85991 * 0.02562 * 6 4 3 8 8 C 1.39605 * 120.57447 * 359.97438 * 7 6 4 9 9 C 1.47939 * 120.54773 * 180.02562 * 8 7 6 10 10 C 1.39915 * 119.45278 * 6.30902 * 9 8 7 11 11 C 1.36593 * 119.46619 * 180.02562 * 10 9 8 12 12 C 1.41306 * 118.41943 * 359.97438 * 11 10 9 13 13 C 1.41042 * 120.55641 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00377 * 154.37650 * 13 12 11 15 15 C 1.40029 * 119.99983 * 334.37104 * 13 12 11 16 16 N 1.30799 * 119.99736 * 342.58020 * 15 13 12 17 17 Si 1.86801 * 120.00081 * 162.57887 * 15 13 12 18 18 H 1.48498 * 109.46874 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47224 * 120.00166 * 17 15 13 20 20 H 1.48503 * 109.47002 * 240.00080 * 17 15 13 21 21 C 1.40956 * 118.88991 * 0.02562 * 12 11 10 22 22 C 1.50704 * 119.79596 * 180.02562 * 21 12 11 23 23 N 1.31265 * 120.40403 * 359.72705 * 21 12 11 24 24 H 1.08994 * 109.47041 * 96.79014 * 1 2 3 25 25 H 1.09000 * 109.47278 * 216.79391 * 1 2 3 26 26 H 1.09002 * 109.47075 * 336.79190 * 1 2 3 27 27 H 1.08003 * 120.35013 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.71501 * 179.97438 * 7 6 4 29 29 H 1.07998 * 120.26429 * 359.97338 * 10 9 8 30 30 H 1.08003 * 120.78969 * 179.97438 * 11 10 9 31 31 H 0.96998 * 119.99279 * 179.97438 * 16 15 13 32 32 H 1.09006 * 109.46520 * 90.00075 * 22 21 12 33 33 H 1.08996 * 109.47266 * 209.99845 * 22 21 12 34 34 H 1.08994 * 109.47268 * 330.00467 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2161 1.1873 0.0000 4 6 3.6008 1.1499 0.0058 5 17 4.4954 2.6376 0.0136 6 7 4.2512 0.0006 0.0060 7 6 3.6203 -1.1550 0.0002 8 6 2.2250 -1.2023 -0.0059 9 6 1.5167 -2.5011 -0.0119 10 6 2.2498 -3.6852 0.1225 11 6 1.5962 -4.8845 0.1165 12 6 0.1903 -4.8835 -0.0260 13 6 -0.5301 -6.0960 -0.0376 14 1 -1.5667 -6.1112 0.2651 15 6 0.0986 -7.2801 -0.4417 16 7 1.2154 -7.2288 -1.1206 17 14 -0.6576 -8.9331 -0.0113 18 1 -1.9108 -8.7192 0.7562 19 1 -0.9618 -9.6783 -1.2592 20 1 0.2989 -9.7157 0.8120 21 6 -0.4801 -3.6504 -0.1565 22 6 -1.9791 -3.6255 -0.3092 23 7 0.1928 -2.5235 -0.1400 24 1 -0.3633 -0.1215 -1.0204 25 1 -0.3634 -0.8229 0.6155 26 1 -0.3633 0.9445 0.4050 27 1 1.6958 2.1337 -0.0004 28 1 4.1870 -2.0744 0.0001 29 1 3.3240 -3.6512 0.2293 30 1 2.1409 -5.8116 0.2183 31 1 1.6511 -8.0491 -1.4002 32 1 -2.4436 -3.5675 0.6753 33 1 -2.2698 -2.7568 -0.8998 34 1 -2.3082 -4.5342 -0.8131 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244913932.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:41 Heat of formation + Delta-G solvation = 31.556360 kcal Electronic energy + Delta-G solvation = -19530.141431 eV Core-core repulsion = 16452.426973 eV Total energy + Delta-G solvation = -3077.714458 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.43515 -40.09275 -37.62572 -36.24123 -34.90727 -34.04228 -32.60689 -31.36567 -29.02441 -28.62454 -26.81647 -24.76710 -23.47865 -22.33845 -21.95115 -19.32371 -17.90392 -17.77675 -17.26022 -16.95736 -16.29504 -15.79156 -15.68211 -15.05393 -14.86480 -14.60184 -13.90138 -13.84407 -13.72883 -13.56664 -13.36233 -13.12822 -12.99462 -12.89577 -12.64453 -12.52945 -12.42136 -12.26213 -12.13535 -11.64426 -11.27474 -10.62720 -10.54222 -10.27493 -10.05903 -9.75468 -9.06218 -8.74514 -6.41308 -0.33579 0.20342 0.83094 0.88722 1.09269 1.40667 1.52218 1.56172 2.14965 2.51212 2.85618 3.46318 3.59956 3.67837 3.87576 3.98755 4.06726 4.28707 4.55554 4.60932 4.66291 4.74019 4.92085 4.96392 4.98292 5.01554 5.05123 5.14351 5.23433 5.32431 5.52713 5.53082 5.65247 5.82654 5.96996 6.00518 6.45467 6.66449 6.71149 6.77895 7.66252 8.13293 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.034917 B = 0.003734 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.699968 B = 7496.778137 C = 8215.868263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.033 4.033 3 C -0.144 4.144 4 C 0.139 3.861 5 Cl -0.032 7.032 6 N -0.495 5.495 7 C 0.101 3.899 8 C -0.051 4.051 9 C -0.012 4.012 10 C -0.128 4.128 11 C -0.163 4.163 12 C 0.047 3.953 13 C -0.449 4.449 14 H 0.099 0.901 15 C 0.035 3.965 16 N -0.803 5.803 17 Si 0.985 3.015 18 H -0.250 1.250 19 H -0.266 1.266 20 H -0.266 1.266 21 C -0.011 4.011 22 C -0.065 4.065 23 N -0.436 5.436 24 H 0.070 0.930 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.169 0.831 28 H 0.171 0.829 29 H 0.123 0.877 30 H 0.113 0.887 31 H 0.296 0.704 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.137 7.535 1.820 7.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.042 4.042 3 C -0.164 4.164 4 C -0.025 4.025 5 Cl -0.004 7.004 6 N -0.206 5.206 7 C -0.058 4.058 8 C -0.054 4.054 9 C -0.146 4.146 10 C -0.148 4.148 11 C -0.188 4.188 12 C 0.043 3.957 13 C -0.477 4.477 14 H 0.117 0.883 15 C -0.184 4.184 16 N -0.427 5.427 17 Si 0.805 3.195 18 H -0.173 1.173 19 H -0.191 1.191 20 H -0.191 1.191 21 C -0.157 4.157 22 C -0.123 4.123 23 N -0.145 5.145 24 H 0.088 0.912 25 H 0.105 0.895 26 H 0.095 0.905 27 H 0.187 0.813 28 H 0.188 0.812 29 H 0.141 0.859 30 H 0.131 0.869 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.382 8.332 1.614 8.495 hybrid contribution 0.031 -1.663 0.029 1.663 sum -0.352 6.669 1.643 6.877 Atomic orbital electron populations 1.20929 0.88016 1.03090 1.03291 1.20676 0.98476 0.90769 0.94270 1.21838 0.91819 1.00107 1.02674 1.21768 0.89389 0.88342 1.02986 1.98360 1.76788 1.28523 1.96720 1.66876 1.41700 0.97846 1.14200 1.22792 0.90870 0.94893 0.97209 1.19679 0.93838 0.92742 0.99153 1.18846 0.89642 0.90847 1.15267 1.21490 0.99802 0.92978 1.00544 1.21293 0.95281 0.96891 1.05320 1.18791 0.93091 0.94402 0.89452 1.20041 0.99540 0.91725 1.36377 0.88339 1.26951 0.94605 1.05308 0.91502 1.69831 1.16297 1.32849 1.23721 0.85081 0.79660 0.75477 0.79233 1.17332 1.19063 1.19117 1.21640 0.97300 0.87993 1.08787 1.20259 0.88622 1.01954 1.01439 1.67083 1.07556 1.29711 1.10167 0.91171 0.89525 0.90452 0.81326 0.81245 0.85933 0.86869 0.89344 0.91761 0.91739 0.91511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.93 8.66 71.24 0.62 -2.31 16 2 C -0.03 -1.11 5.95 -19.41 -0.12 -1.23 16 3 C -0.14 -4.12 9.54 22.35 0.21 -3.91 16 4 C 0.14 4.30 7.27 84.73 0.62 4.92 16 5 Cl -0.03 -0.83 29.10 -2.72 -0.08 -0.91 16 6 N -0.50 -17.21 10.32 -185.53 -1.92 -19.13 16 7 C 0.10 3.58 10.58 85.05 0.90 4.48 16 8 C -0.05 -1.94 5.89 -19.94 -0.12 -2.06 16 9 C -0.01 -0.53 6.69 41.94 0.28 -0.25 16 10 C -0.13 -5.66 9.38 22.29 0.21 -5.45 16 11 C -0.16 -7.92 8.73 22.64 0.20 -7.73 16 12 C 0.05 2.32 5.57 -21.17 -0.12 2.20 16 13 C -0.45 -20.93 8.12 23.39 0.19 -20.74 16 14 H 0.10 4.28 6.88 -2.91 -0.02 4.26 16 15 C 0.04 1.54 5.16 85.28 0.44 1.98 16 16 N -0.80 -37.54 11.04 21.84 0.24 -37.29 16 17 Si 0.99 33.22 29.59 68.60 2.03 35.25 16 18 H -0.25 -8.12 7.11 99.48 0.71 -7.42 16 19 H -0.27 -8.70 7.11 99.48 0.71 -7.99 16 20 H -0.27 -8.82 7.11 99.48 0.71 -8.11 16 21 C -0.01 -0.51 6.86 43.31 0.30 -0.22 16 22 C -0.07 -2.40 9.58 71.24 0.68 -1.72 16 23 N -0.44 -19.11 6.26 -170.97 -1.07 -20.18 16 24 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.09 3.04 5.78 -2.39 -0.01 3.03 16 26 H 0.08 1.80 8.06 -2.39 -0.02 1.78 16 27 H 0.17 3.64 8.06 -2.91 -0.02 3.62 16 28 H 0.17 5.52 6.22 -2.91 -0.02 5.50 16 29 H 0.12 4.70 6.22 -2.91 -0.02 4.68 16 30 H 0.11 5.65 6.33 -2.91 -0.02 5.63 16 31 H 0.30 12.38 8.29 -92.71 -0.77 11.61 16 32 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 33 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.07 2.43 6.77 -2.39 -0.02 2.42 16 Total: -1.00 -53.54 302.65 4.65 -48.89 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: 1.15 Total: 25.40 kcal Atomic # 6 Polarization: -36.31 SS G_CDS: 4.29 Total: -32.02 kcal Atomic # 7 Polarization: -73.86 SS G_CDS: -2.74 Total: -76.60 kcal Atomic # 14 Polarization: 33.22 SS G_CDS: 2.03 Total: 35.25 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.08 Total: -0.91 kcal Total: -53.54 4.65 -48.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244913932.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.447 kcal (2) G-P(sol) polarization free energy of solvation -53.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds