Wall clock time and date at job start Tue Mar 31 2020 06:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38868 * 119.24627 * 2 1 4 4 C 1.36888 * 119.79424 * 179.70158 * 3 2 1 5 5 C 1.41120 * 118.39977 * 0.55879 * 4 3 2 6 6 C 1.40879 * 120.71718 * 179.71041 * 5 4 3 7 7 H 1.07993 * 120.00072 * 149.11399 * 6 5 4 8 8 C 1.40071 * 119.99962 * 329.10688 * 6 5 4 9 9 N 1.30775 * 120.00329 * 348.72361 * 8 6 5 10 10 Si 1.86797 * 119.99883 * 168.71992 * 8 6 5 11 11 H 1.48500 * 109.47102 * 90.00023 * 10 8 6 12 12 H 1.48500 * 109.47393 * 210.00407 * 10 8 6 13 13 H 1.48503 * 109.47273 * 330.00619 * 10 8 6 14 14 C 1.41876 * 118.55945 * 359.72876 * 5 4 3 15 15 C 1.47798 * 119.99085 * 180.02562 * 14 5 4 16 16 C 1.39658 * 120.54966 * 309.79684 * 15 14 5 17 17 N 1.31662 * 120.56192 * 179.97438 * 16 15 14 18 18 C 1.32063 * 121.86985 * 0.02562 * 17 16 15 19 19 Cl 1.73603 * 119.47220 * 179.97438 * 18 17 16 20 20 C 1.38540 * 121.06266 * 0.02562 * 18 17 16 21 21 C 1.38274 * 119.30741 * 359.65750 * 20 18 17 22 22 C 1.50698 * 120.85174 * 180.34097 * 21 20 18 23 23 N 1.31740 * 119.24087 * 180.27008 * 2 1 3 24 24 H 1.08998 * 109.46853 * 269.73265 * 1 2 3 25 25 H 1.08990 * 109.47377 * 149.72968 * 1 2 3 26 26 H 1.08998 * 109.46554 * 29.72478 * 1 2 3 27 27 H 1.07994 * 120.09858 * 0.02562 * 3 2 1 28 28 H 1.08008 * 120.79422 * 180.26452 * 4 3 2 29 29 H 0.96993 * 120.00527 * 179.97438 * 9 8 6 30 30 H 1.07996 * 119.72081 * 0.02562 * 16 15 14 31 31 H 1.08002 * 120.34526 * 179.97438 * 20 18 17 32 32 H 1.09001 * 109.46880 * 264.99323 * 22 21 20 33 33 H 1.08996 * 109.47076 * 24.99267 * 22 21 20 34 34 H 1.09004 * 109.47376 * 144.98849 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1855 1.2117 0.0000 4 6 3.5544 1.2248 0.0062 5 6 4.2374 -0.0101 0.0003 6 6 5.6455 -0.0535 0.0002 7 1 6.1605 -0.8747 0.4764 8 6 6.3777 0.9683 -0.6178 9 7 5.7693 1.8399 -1.3796 10 14 8.2231 1.0860 -0.3536 11 1 8.9239 0.2931 -1.3955 12 1 8.6466 2.5065 -0.4443 13 1 8.5661 0.5519 0.9889 14 6 3.4753 -1.2068 -0.0058 15 6 4.1582 -2.5175 -0.0115 16 6 5.1695 -2.7871 -0.9361 17 7 5.7784 -3.9545 -0.9410 18 6 5.4635 -4.9087 -0.0841 19 17 6.3064 -6.4251 -0.1467 20 6 4.4706 -4.7195 0.8634 21 6 3.8055 -3.5083 0.9143 22 6 2.7251 -3.2622 1.9356 23 7 2.1506 -1.1495 -0.0054 24 1 -0.3633 -0.0048 1.0276 25 1 -0.3633 -0.8875 -0.5180 26 1 -0.3632 0.8925 -0.5096 27 1 1.6349 2.1407 0.0004 28 1 4.0984 2.1578 0.0106 29 1 6.2762 2.5477 -1.8072 30 1 5.4552 -2.0313 -1.6527 31 1 4.2222 -5.5080 1.5584 32 1 1.7520 -3.4774 1.4941 33 1 2.8848 -3.9109 2.7969 34 1 2.7571 -2.2204 2.2546 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244914583.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:04 Heat of formation + Delta-G solvation = 22.826801 kcal Electronic energy + Delta-G solvation = -20000.432814 eV Core-core repulsion = 16922.339813 eV Total energy + Delta-G solvation = -3078.093000 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.41168 -40.04763 -37.60883 -36.16250 -35.15260 -33.67225 -32.65659 -31.06046 -29.57016 -28.73441 -26.30994 -24.78099 -23.47391 -22.44000 -22.02118 -19.26773 -17.82291 -17.72017 -17.35279 -17.09744 -16.22315 -15.71479 -15.46025 -15.20139 -14.83224 -14.46914 -14.06523 -13.98532 -13.70304 -13.53929 -13.38958 -13.19157 -13.05460 -12.77629 -12.64952 -12.60028 -12.49506 -12.25968 -12.20653 -11.71501 -11.21975 -10.68319 -10.50554 -10.25174 -9.96027 -9.78101 -9.15930 -8.70847 -6.44309 -0.16090 0.22914 0.78894 0.82845 1.07443 1.35520 1.44155 1.47845 2.14058 2.64791 2.71645 3.47338 3.57485 3.71722 3.87213 4.06466 4.14438 4.36236 4.44931 4.61368 4.69315 4.74787 4.83141 4.90761 4.94887 5.01394 5.03794 5.11074 5.20702 5.26601 5.34130 5.50840 5.60353 5.79737 5.92711 6.03762 6.45503 6.70764 6.74476 6.80895 7.67810 8.20828 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.011736 B = 0.007451 C = 0.004838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.158407 B = 3757.006519 C = 5786.239235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.007 4.007 3 C -0.144 4.144 4 C -0.140 4.140 5 C 0.060 3.940 6 C -0.463 4.463 7 H 0.073 0.927 8 C 0.045 3.955 9 N -0.815 5.815 10 Si 0.968 3.032 11 H -0.265 1.265 12 H -0.261 1.261 13 H -0.262 1.262 14 C 0.010 3.990 15 C -0.041 4.041 16 C 0.132 3.868 17 N -0.505 5.505 18 C 0.148 3.852 19 Cl -0.031 7.031 20 C -0.147 4.147 21 C -0.030 4.030 22 C -0.090 4.090 23 N -0.453 5.453 24 H 0.070 0.930 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.128 0.872 28 H 0.114 0.886 29 H 0.293 0.707 30 H 0.150 0.850 31 H 0.175 0.825 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.996 -6.193 4.635 8.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.149 4.149 3 C -0.164 4.164 4 C -0.166 4.166 5 C 0.056 3.944 6 C -0.493 4.493 7 H 0.091 0.909 8 C -0.172 4.172 9 N -0.441 5.441 10 Si 0.789 3.211 11 H -0.190 1.190 12 H -0.185 1.185 13 H -0.186 1.186 14 C -0.128 4.128 15 C -0.044 4.044 16 C -0.026 4.026 17 N -0.216 5.216 18 C -0.016 4.016 19 Cl -0.002 7.002 20 C -0.168 4.168 21 C -0.039 4.039 22 C -0.147 4.147 23 N -0.161 5.161 24 H 0.089 0.911 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.146 0.854 28 H 0.131 0.869 29 H 0.104 0.896 30 H 0.168 0.832 31 H 0.192 0.808 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.695 -7.043 3.858 8.471 hybrid contribution 1.040 1.364 0.191 1.726 sum -1.656 -5.679 4.049 7.169 Atomic orbital electron populations 1.20362 0.87915 1.02314 1.02170 1.21091 0.97229 0.87934 1.08663 1.21600 0.94755 0.98840 1.01241 1.21419 0.93749 0.98169 1.03261 1.18596 0.94642 0.91546 0.89601 1.19512 0.91191 1.07050 1.31513 0.90862 1.26575 1.05124 0.93318 0.92172 1.69748 1.40416 1.12745 1.21145 0.85385 0.76843 0.78936 0.79922 1.18987 1.18544 1.18589 1.19391 0.88878 0.90973 1.13560 1.19456 0.96018 0.93245 0.95724 1.22638 0.91675 0.91506 0.96746 1.66888 1.28596 1.01389 1.24752 1.21844 0.94934 0.89542 0.95275 1.98354 1.77655 1.26341 1.97872 1.21797 0.96173 0.98631 1.00187 1.20715 0.96230 0.91748 0.95194 1.20626 0.95864 1.02054 0.96113 1.66984 1.08941 1.29881 1.10336 0.91085 0.92188 0.90666 0.85399 0.86852 0.89623 0.83236 0.80768 0.89823 0.88815 0.93145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.12 10.15 71.24 0.72 -1.40 16 2 C -0.01 -0.27 6.79 42.73 0.29 0.02 16 3 C -0.14 -6.09 9.64 22.10 0.21 -5.87 16 4 C -0.14 -6.75 8.70 22.66 0.20 -6.55 16 5 C 0.06 3.03 5.52 -21.03 -0.12 2.92 16 6 C -0.46 -23.09 7.01 23.36 0.16 -22.92 16 7 H 0.07 3.69 6.88 -2.91 -0.02 3.67 16 8 C 0.05 2.12 5.25 85.30 0.45 2.57 16 9 N -0.82 -39.46 11.06 21.85 0.24 -39.22 16 10 Si 0.97 36.97 29.58 68.60 2.03 39.00 16 11 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 12 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 13 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 14 C 0.01 0.45 5.51 42.46 0.23 0.68 16 15 C -0.04 -1.77 5.07 -19.95 -0.10 -1.88 16 16 C 0.13 5.73 9.29 85.06 0.79 6.52 16 17 N -0.50 -20.44 10.32 -185.48 -1.91 -22.35 16 18 C 0.15 5.10 7.27 84.73 0.62 5.71 16 19 Cl -0.03 -0.87 29.10 -2.72 -0.08 -0.95 16 20 C -0.15 -4.55 9.55 22.35 0.21 -4.33 16 21 C -0.03 -1.08 5.95 -19.40 -0.12 -1.20 16 22 C -0.09 -2.72 8.92 71.24 0.64 -2.09 16 23 N -0.45 -20.03 8.99 -171.14 -1.54 -21.57 16 24 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.07 1.96 8.07 -2.39 -0.02 1.94 16 27 H 0.13 4.55 8.06 -2.91 -0.02 4.52 16 28 H 0.11 5.64 6.51 -2.91 -0.02 5.62 16 29 H 0.29 12.86 8.29 -92.71 -0.77 12.09 16 30 H 0.15 6.95 7.32 -2.91 -0.02 6.93 16 31 H 0.17 3.93 8.06 -2.91 -0.02 3.90 16 32 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.09 2.11 8.07 -2.39 -0.02 2.09 16 34 H 0.05 1.77 7.19 -2.39 -0.02 1.75 16 Total: -1.00 -55.74 307.86 4.06 -51.68 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: 1.13 Total: 21.22 kcal Atomic # 6 Polarization: -32.01 SS G_CDS: 4.19 Total: -27.82 kcal Atomic # 7 Polarization: -79.93 SS G_CDS: -3.21 Total: -83.14 kcal Atomic # 14 Polarization: 36.97 SS G_CDS: 2.03 Total: 39.00 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -0.08 Total: -0.95 kcal Total: -55.74 4.06 -51.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244914583.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.509 kcal (2) G-P(sol) polarization free energy of solvation -55.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds