Wall clock time and date at job start Tue Mar 31 2020 05:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38147 * 120.06923 * 2 1 4 4 Cl 1.73596 * 119.95106 * 359.97438 * 3 2 1 5 5 C 1.38431 * 120.09736 * 179.97438 * 3 2 1 6 6 C 1.38326 * 120.24385 * 359.79555 * 5 3 2 7 7 C 1.37990 * 120.14190 * 0.46065 * 6 5 3 8 8 C 1.39356 * 120.07480 * 179.97438 * 2 1 3 9 9 C 1.48288 * 120.11543 * 359.97438 * 8 2 1 10 10 C 1.39288 * 120.16135 * 244.74918 * 9 8 2 11 11 C 1.38015 * 119.94515 * 179.70381 * 10 9 8 12 12 C 1.38444 * 120.27130 * 0.56949 * 11 10 9 13 13 C 1.38109 * 120.32100 * 359.72931 * 12 11 10 14 14 C 1.38762 * 120.05124 * 359.97011 * 13 12 11 15 15 O 1.35666 * 120.13313 * 179.97438 * 14 13 12 16 16 C 1.34813 * 117.00274 * 354.40714 * 15 14 13 17 17 H 1.08004 * 119.99726 * 5.07286 * 16 15 14 18 18 C 1.38644 * 120.00111 * 185.07525 * 16 15 14 19 19 N 1.31567 * 120.00091 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99988 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47149 * 90.00039 * 20 18 16 22 22 H 1.48497 * 109.47086 * 209.99826 * 20 18 16 23 23 H 1.48492 * 109.47155 * 329.99974 * 20 18 16 24 24 H 1.08999 * 109.46874 * 270.02087 * 1 2 3 25 25 H 1.08993 * 109.47140 * 30.02374 * 1 2 3 26 26 H 1.08999 * 109.46745 * 150.02349 * 1 2 3 27 27 H 1.08000 * 119.87486 * 180.02562 * 5 3 2 28 28 H 1.07999 * 119.93534 * 180.23084 * 6 5 3 29 29 H 1.07994 * 120.05810 * 179.79247 * 7 6 5 30 30 H 1.08006 * 120.02462 * 359.97438 * 10 9 8 31 31 H 1.08002 * 119.85955 * 180.32143 * 11 10 9 32 32 H 1.07992 * 119.83959 * 179.74635 * 12 11 10 33 33 H 1.08001 * 119.97143 * 179.97438 * 13 12 11 34 34 H 0.97000 * 119.99489 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.1956 0.0000 4 17 1.3318 2.6992 -0.0007 5 6 3.5835 1.1962 0.0005 6 6 4.2808 0.0016 0.0053 7 6 3.5996 -1.1984 0.0000 8 6 2.2054 -1.2060 0.0005 9 6 1.4682 -2.4926 0.0017 10 6 1.5665 -3.3545 1.0915 11 6 0.8736 -4.5481 1.0905 12 6 0.0894 -4.8990 0.0048 13 6 -0.0111 -4.0556 -1.0842 14 6 0.6749 -2.8494 -1.0947 15 8 0.5777 -2.0199 -2.1639 16 6 -0.1070 -2.4758 -3.2320 17 1 -0.6172 -3.4263 -3.1808 18 6 -0.1562 -1.7243 -4.3961 19 7 -0.8240 -2.1694 -5.4387 20 14 0.7258 -0.0800 -4.4843 21 1 2.1129 -0.2878 -4.9719 22 1 0.0026 0.8201 -5.4182 23 1 0.7628 0.5349 -3.1332 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8897 -0.5142 26 1 -0.3633 -0.8902 -0.5135 27 1 4.1210 2.1330 0.0010 28 1 5.3608 0.0080 0.0095 29 1 4.1454 -2.1303 0.0004 30 1 2.1810 -3.0869 1.9384 31 1 0.9467 -5.2130 1.9384 32 1 -0.4465 -5.8365 0.0097 33 1 -0.6241 -4.3351 -1.9283 34 1 -0.8580 -1.6438 -6.2532 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244963896.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:47 Heat of formation + Delta-G solvation = -2.392050 kcal Electronic energy + Delta-G solvation = -20318.099988 eV Core-core repulsion = 17206.620666 eV Total energy + Delta-G solvation = -3111.479323 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.34071 -39.92282 -38.16810 -37.38160 -34.52424 -34.05111 -32.92487 -30.86072 -29.95161 -27.91120 -27.15544 -24.49079 -22.98877 -22.67771 -21.77097 -19.77924 -19.08007 -17.70591 -16.94449 -16.61942 -16.44457 -16.08267 -15.62211 -15.60729 -15.33004 -14.87730 -14.51305 -14.25867 -14.07468 -14.05662 -13.37623 -13.29084 -13.17324 -12.71754 -12.65130 -12.51790 -12.41528 -12.29418 -12.15555 -11.95375 -11.69009 -11.25044 -10.92033 -9.99491 -9.57437 -9.45378 -8.95992 -8.51895 -6.21051 0.09329 0.26671 0.61620 0.72335 1.16803 1.26941 1.28628 1.48551 2.24089 2.63731 2.78337 3.02368 3.16367 3.68558 3.86841 4.08190 4.11116 4.19827 4.28072 4.44928 4.54390 4.64219 4.67299 4.71054 4.75460 4.86471 4.94308 5.16529 5.25046 5.30056 5.40041 5.44625 5.55183 5.63298 5.74474 5.78013 5.89043 5.94466 6.24740 6.84750 7.61098 8.59714 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.011435 B = 0.009158 C = 0.005993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.085816 B = 3056.808395 C = 4670.813625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.073 4.073 3 C -0.054 4.054 4 Cl -0.076 7.076 5 C -0.116 4.116 6 C -0.109 4.109 7 C -0.108 4.108 8 C -0.028 4.028 9 C -0.129 4.129 10 C -0.058 4.058 11 C -0.181 4.181 12 C -0.072 4.072 13 C -0.243 4.243 14 C 0.140 3.860 15 O -0.226 6.226 16 C -0.390 4.390 17 H 0.084 0.916 18 C 0.021 3.979 19 N -0.921 5.921 20 Si 0.948 3.052 21 H -0.271 1.271 22 H -0.272 1.272 23 H -0.257 1.257 24 H 0.083 0.917 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.155 0.845 28 H 0.168 0.832 29 H 0.145 0.855 30 H 0.150 0.850 31 H 0.154 0.846 32 H 0.140 0.860 33 H 0.110 0.890 34 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.033 3.348 14.653 17.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.074 4.074 3 C -0.080 4.080 4 Cl -0.047 7.047 5 C -0.134 4.134 6 C -0.126 4.126 7 C -0.126 4.126 8 C -0.029 4.029 9 C -0.130 4.130 10 C -0.076 4.076 11 C -0.199 4.199 12 C -0.090 4.090 13 C -0.263 4.263 14 C 0.090 3.910 15 O -0.133 6.133 16 C -0.467 4.467 17 H 0.101 0.899 18 C -0.178 4.178 19 N -0.562 5.562 20 Si 0.771 3.229 21 H -0.196 1.196 22 H -0.197 1.197 23 H -0.181 1.181 24 H 0.101 0.899 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.173 0.827 28 H 0.186 0.814 29 H 0.163 0.837 30 H 0.168 0.832 31 H 0.172 0.828 32 H 0.158 0.842 33 H 0.127 0.873 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.959 3.753 14.400 17.370 hybrid contribution -0.537 0.483 -0.963 1.204 sum 8.422 4.235 13.437 16.414 Atomic orbital electron populations 1.20853 0.91247 1.02926 1.02322 1.19917 0.96658 0.91516 0.99283 1.20906 0.93324 0.86074 1.07741 1.98321 1.77490 1.31836 1.97042 1.21354 0.90924 1.00678 1.00461 1.21364 1.01607 0.90464 0.99195 1.21599 0.92308 0.99929 0.98757 1.18596 0.93631 0.90856 0.99776 1.18056 1.03129 0.96616 0.95179 1.21154 0.97917 0.92734 0.95812 1.21138 1.00800 0.98180 0.99775 1.21224 0.97066 0.98539 0.92124 1.21300 1.06286 0.96839 1.01835 1.19502 0.93893 0.89761 0.87836 1.83591 1.67528 1.40205 1.21946 1.20689 1.29296 1.06795 0.89890 0.89851 1.25032 0.97325 1.01950 0.93478 1.69718 1.42299 1.40374 1.03801 0.85518 0.78728 0.79413 0.79209 1.19648 1.19726 1.18065 0.89897 0.92030 0.92134 0.82737 0.81423 0.83732 0.83227 0.82837 0.84234 0.87258 0.90767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.40 9.05 71.24 0.64 -3.76 16 2 C -0.07 -2.65 5.69 -19.62 -0.11 -2.76 16 3 C -0.05 -1.74 6.31 22.29 0.14 -1.59 16 4 Cl -0.08 -2.27 27.29 -2.72 -0.07 -2.34 16 5 C -0.12 -3.01 9.82 22.34 0.22 -2.79 16 6 C -0.11 -2.57 10.03 22.23 0.22 -2.35 16 7 C -0.11 -3.07 9.73 22.50 0.22 -2.85 16 8 C -0.03 -0.99 4.94 -20.05 -0.10 -1.09 16 9 C -0.13 -4.75 4.63 -19.93 -0.09 -4.84 16 10 C -0.06 -1.70 9.73 22.47 0.22 -1.48 16 11 C -0.18 -4.92 10.03 22.27 0.22 -4.69 16 12 C -0.07 -2.31 10.03 22.29 0.22 -2.08 16 13 C -0.24 -10.26 9.16 22.36 0.20 -10.06 16 14 C 0.14 6.26 5.24 22.81 0.12 6.38 16 15 O -0.23 -11.80 6.53 -21.64 -0.14 -11.94 16 16 C -0.39 -22.49 9.95 67.92 0.68 -21.82 16 17 H 0.08 5.03 5.44 -2.91 -0.02 5.01 16 18 C 0.02 1.21 5.49 84.83 0.47 1.68 16 19 N -0.92 -55.09 13.96 21.61 0.30 -54.79 16 20 Si 0.95 46.50 28.62 68.60 1.96 48.47 16 21 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 22 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 23 H -0.26 -12.70 7.11 99.48 0.71 -11.99 16 24 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 25 H 0.06 2.32 6.90 -2.39 -0.02 2.30 16 26 H 0.06 2.63 4.68 -2.39 -0.01 2.62 16 27 H 0.15 3.10 8.06 -2.91 -0.02 3.07 16 28 H 0.17 2.60 8.06 -2.91 -0.02 2.58 16 29 H 0.14 3.49 8.06 -2.91 -0.02 3.46 16 30 H 0.15 3.35 8.06 -2.91 -0.02 3.32 16 31 H 0.15 2.96 8.06 -2.91 -0.02 2.93 16 32 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 33 H 0.11 5.10 5.64 -2.91 -0.02 5.08 16 34 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -65.83 305.03 6.45 -59.38 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 1.13 Total: 15.33 kcal Atomic # 6 Polarization: -57.38 SS G_CDS: 3.28 Total: -54.11 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: 0.30 Total: -54.79 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: -0.14 Total: -11.94 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 1.96 Total: 48.47 kcal Atomic # 17 Polarization: -2.27 SS G_CDS: -0.07 Total: -2.34 kcal Total: -65.83 6.45 -59.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244963896.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.984 kcal (2) G-P(sol) polarization free energy of solvation -65.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds