Wall clock time and date at job start Tue Mar 31 2020 05:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.36227 * 120.05559 * 2 1 4 4 C 1.39991 * 120.11716 * 179.97438 * 3 2 1 5 5 C 1.47850 * 119.89099 * 180.02562 * 4 3 2 6 6 C 1.39611 * 120.16889 * 309.75001 * 5 4 3 7 7 C 1.37978 * 119.89046 * 179.74261 * 6 5 4 8 8 Cl 1.73600 * 119.87318 * 180.27294 * 7 6 5 9 9 C 1.38610 * 120.25262 * 0.52992 * 7 6 5 10 10 C 1.38180 * 120.35185 * 359.72051 * 9 7 6 11 11 C 1.38559 * 120.09890 * 0.02614 * 10 9 7 12 12 O 1.35806 * 120.12681 * 179.97438 * 11 10 9 13 13 C 1.40028 * 120.22433 * 0.04004 * 4 3 2 14 14 C 1.36201 * 120.11444 * 359.96080 * 13 4 3 15 15 C 1.40932 * 120.05846 * 180.02562 * 2 1 3 16 16 C 1.40994 * 120.11369 * 0.25704 * 15 2 1 17 17 H 1.07994 * 119.99878 * 333.34363 * 16 15 2 18 18 C 1.39982 * 119.99824 * 153.33844 * 16 15 2 19 19 N 1.30821 * 120.00475 * 343.85456 * 18 16 15 20 20 Si 1.86800 * 119.99776 * 163.85213 * 18 16 15 21 21 H 1.48500 * 109.47194 * 89.99904 * 20 18 16 22 22 H 1.48503 * 109.47354 * 210.00331 * 20 18 16 23 23 H 1.48504 * 109.47257 * 330.00193 * 20 18 16 24 24 H 1.08998 * 109.46826 * 269.98265 * 1 2 3 25 25 H 1.08992 * 109.46737 * 29.98364 * 1 2 3 26 26 H 1.08994 * 109.46548 * 149.97969 * 1 2 3 27 27 H 1.07999 * 119.94336 * 0.02562 * 3 2 1 28 28 H 1.08000 * 120.05410 * 359.97438 * 6 5 4 29 29 H 1.08000 * 119.82135 * 179.74482 * 9 7 6 30 30 H 1.08000 * 119.95144 * 180.02562 * 10 9 7 31 31 H 0.96691 * 113.99832 * 270.01955 * 12 11 10 32 32 H 1.07994 * 119.94212 * 179.97438 * 13 4 3 33 33 H 1.08001 * 120.05881 * 180.02562 * 14 13 4 34 34 H 0.96993 * 119.99715 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1893 1.1791 0.0000 4 6 3.5893 1.1806 0.0005 5 6 4.3247 2.4632 0.0011 6 6 4.0045 3.4560 -0.9268 7 6 4.6909 4.6529 -0.9177 8 17 4.2876 5.8897 -2.0671 9 6 5.7049 4.8694 0.0023 10 6 6.0338 3.8919 0.9219 11 6 5.3504 2.6865 0.9292 12 8 5.6735 1.7252 1.8324 13 6 4.2954 -0.0286 0.0002 14 6 3.6227 -1.2128 0.0002 15 6 2.2130 -1.2198 -0.0005 16 6 1.5117 -2.4429 -0.0066 17 1 0.5164 -2.4967 0.4090 18 6 2.1056 -3.5875 -0.5513 19 7 3.1531 -3.4750 -1.3269 20 14 1.4023 -5.2757 -0.1708 21 1 0.3781 -5.6259 -1.1875 22 1 2.4923 -6.2838 -0.1986 23 1 0.7773 -5.2595 1.1762 24 1 -0.3633 -0.0003 1.0277 25 1 -0.3632 0.8901 -0.5136 26 1 -0.3632 -0.8898 -0.5141 27 1 1.6493 2.1144 0.0004 28 1 3.2183 3.2889 -1.6481 29 1 6.2404 5.8072 0.0005 30 1 6.8247 4.0676 1.6360 31 1 6.3544 1.1108 1.5261 32 1 5.3754 -0.0221 0.0002 33 1 4.1683 -2.1449 0.0004 34 1 3.5647 -4.2681 -1.7040 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245052754.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:43 Heat of formation + Delta-G solvation = -21.947286 kcal Electronic energy + Delta-G solvation = -19467.236026 eV Core-core repulsion = 16354.908724 eV Total energy + Delta-G solvation = -3112.327301 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.61380 -37.67588 -36.85667 -35.69876 -33.97121 -32.18637 -30.86090 -29.51617 -28.59891 -26.23681 -24.98366 -22.59282 -22.10740 -20.57956 -19.62781 -17.89531 -17.32061 -16.44270 -15.65798 -15.35528 -15.03186 -14.32476 -13.98877 -13.72421 -13.47044 -13.04736 -12.77469 -12.62856 -12.28044 -12.04456 -11.90051 -11.59041 -11.31529 -11.22111 -11.15614 -10.97604 -10.84425 -10.71408 -10.45975 -10.17075 -9.63113 -9.45104 -9.27107 -8.73379 -8.25683 -7.48233 -7.20437 -6.89400 -4.45527 1.28165 1.43930 2.28040 2.66641 2.98998 3.01274 3.02662 3.10245 3.78985 3.82220 4.49687 4.53083 5.04776 5.11628 5.44063 5.53820 5.66339 5.93192 6.07874 6.12141 6.24871 6.30969 6.35710 6.43914 6.62634 6.63531 6.70378 6.88653 6.91845 6.99314 7.15891 7.29008 7.54914 7.77749 7.93294 7.97479 8.00609 8.16943 8.48656 8.74244 8.84839 10.01810 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.025318 B = 0.004019 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.656676 B = 6964.411608 C = 7470.095600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.200 4.200 3 C -0.060 4.060 4 C -0.197 4.197 5 C 0.005 3.995 6 C -0.106 4.106 7 C -0.037 4.037 8 Cl -0.085 7.085 9 C -0.125 4.125 10 C -0.133 4.133 11 C 0.099 3.901 12 O -0.485 6.485 13 C -0.070 4.070 14 C -0.166 4.166 15 C 0.123 3.877 16 C -0.448 4.448 17 H 0.083 0.917 18 C 0.075 3.925 19 N -0.784 5.784 20 Si 0.908 3.092 21 H -0.268 1.268 22 H -0.275 1.275 23 H -0.259 1.259 24 H 0.042 0.958 25 H 0.038 0.962 26 H 0.061 0.939 27 H 0.089 0.911 28 H 0.134 0.866 29 H 0.128 0.872 30 H 0.130 0.870 31 H 0.385 0.615 32 H 0.082 0.918 33 H 0.118 0.882 34 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.265 8.519 0.830 9.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.201 4.201 3 C -0.078 4.078 4 C -0.199 4.199 5 C 0.004 3.996 6 C -0.125 4.125 7 C -0.063 4.063 8 Cl -0.056 7.056 9 C -0.144 4.144 10 C -0.151 4.151 11 C 0.054 3.946 12 O -0.295 6.295 13 C -0.089 4.089 14 C -0.185 4.185 15 C 0.121 3.879 16 C -0.476 4.476 17 H 0.101 0.899 18 C -0.144 4.144 19 N -0.408 5.408 20 Si 0.732 3.268 21 H -0.193 1.193 22 H -0.200 1.200 23 H -0.183 1.183 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.080 0.920 27 H 0.107 0.893 28 H 0.151 0.849 29 H 0.146 0.854 30 H 0.148 0.852 31 H 0.241 0.759 32 H 0.101 0.899 33 H 0.136 0.864 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.963 8.747 0.924 9.647 hybrid contribution 0.179 -0.880 -0.342 0.961 sum 4.142 7.867 0.581 8.910 Atomic orbital electron populations 1.20410 0.93413 1.00649 0.99748 1.19425 0.94500 0.92960 1.13263 1.20159 0.92360 0.96120 0.99173 1.17781 0.92423 0.89686 1.19963 1.19337 0.94524 0.94225 0.91510 1.21159 1.00527 0.91299 0.99481 1.20808 0.99743 0.90987 0.94806 1.98338 1.93436 1.53969 1.59874 1.20714 0.97985 0.99958 0.95769 1.21209 1.00667 0.93857 0.99394 1.18711 0.96125 0.89432 0.90306 1.84797 1.61725 1.42959 1.40031 1.20231 0.96590 0.92228 0.99831 1.20930 0.94507 0.96451 1.06601 1.17555 0.91849 0.91653 0.86877 1.19646 1.02130 0.92699 1.33125 0.89895 1.25995 0.94159 1.01633 0.92657 1.69815 1.17878 1.32187 1.20910 0.86298 0.79523 0.80614 0.80322 1.19335 1.19967 1.18283 0.93972 0.94288 0.91994 0.89293 0.84860 0.85416 0.85192 0.75935 0.89949 0.86436 0.90597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.73 9.40 36.01 0.34 -1.39 16 2 C -0.20 -4.69 5.90 -104.32 -0.62 -5.30 16 3 C -0.06 -1.33 9.08 -39.65 -0.36 -1.69 16 4 C -0.20 -4.25 5.30 -104.64 -0.55 -4.81 16 5 C 0.00 0.09 5.48 -104.75 -0.57 -0.48 16 6 C -0.11 -1.79 9.28 -39.16 -0.36 -2.16 16 7 C -0.04 -0.55 6.31 -39.54 -0.25 -0.80 16 8 Cl -0.08 -1.13 28.95 -51.86 -1.50 -2.63 16 9 C -0.13 -1.69 9.82 -39.47 -0.39 -2.08 16 10 C -0.13 -1.85 9.97 -39.48 -0.39 -2.25 16 11 C 0.10 1.66 6.61 -38.76 -0.26 1.40 16 12 O -0.49 -7.94 12.12 -19.13 -0.23 -8.17 16 13 C -0.07 -1.56 8.70 -39.64 -0.35 -1.91 16 14 C -0.17 -4.09 8.60 -39.28 -0.34 -4.42 16 15 C 0.12 3.12 5.56 -106.80 -0.59 2.53 16 16 C -0.45 -11.16 8.09 -37.89 -0.31 -11.47 16 17 H 0.08 1.98 6.88 -52.49 -0.36 1.62 16 18 C 0.07 1.77 5.15 -17.33 -0.09 1.68 16 19 N -0.78 -19.17 10.97 55.55 0.61 -18.56 16 20 Si 0.91 17.68 29.59 -169.99 -5.03 12.65 16 21 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 22 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 23 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 24 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.04 0.70 8.08 -51.93 -0.42 0.28 16 26 H 0.06 1.26 6.77 -51.93 -0.35 0.91 16 27 H 0.09 1.80 8.04 -52.49 -0.42 1.38 16 28 H 0.13 2.24 8.04 -52.49 -0.42 1.82 16 29 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 30 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 31 H 0.38 4.77 8.23 45.56 0.37 5.15 16 32 H 0.08 1.60 7.08 -52.49 -0.37 1.23 16 33 H 0.12 2.98 6.24 -52.49 -0.33 2.65 16 34 H 0.28 6.29 8.29 -40.82 -0.34 5.95 16 LS Contribution 308.11 15.07 4.64 4.64 Total: -1.00 -26.73 308.11 -9.30 -36.03 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -2.70 Total: 9.19 kcal Atomic # 6 Polarization: -28.05 SS G_CDS: -5.09 Total: -33.13 kcal Atomic # 7 Polarization: -19.17 SS G_CDS: 0.61 Total: -18.56 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: -0.23 Total: -8.17 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.03 Total: 12.65 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -1.50 Total: -2.63 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -26.73 -9.30 -36.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245052754.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.080 kcal (2) G-P(sol) polarization free energy of solvation -26.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds