Wall clock time and date at job start Tue Mar 31 2020 05:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.36227 * 120.05559 * 2 1 4 4 C 1.39991 * 120.11716 * 179.97438 * 3 2 1 5 5 C 1.47850 * 119.89099 * 180.02562 * 4 3 2 6 6 C 1.39611 * 120.16889 * 309.75001 * 5 4 3 7 7 C 1.37978 * 119.89046 * 179.74261 * 6 5 4 8 8 Cl 1.73600 * 119.87318 * 180.27294 * 7 6 5 9 9 C 1.38610 * 120.25262 * 0.52992 * 7 6 5 10 10 C 1.38180 * 120.35185 * 359.72051 * 9 7 6 11 11 C 1.38559 * 120.09890 * 0.02614 * 10 9 7 12 12 O 1.35806 * 120.12681 * 179.97438 * 11 10 9 13 13 C 1.40028 * 120.22433 * 0.04004 * 4 3 2 14 14 C 1.36201 * 120.11444 * 359.96080 * 13 4 3 15 15 C 1.40932 * 120.05846 * 180.02562 * 2 1 3 16 16 C 1.40994 * 120.11369 * 0.25704 * 15 2 1 17 17 H 1.07994 * 119.99878 * 333.34363 * 16 15 2 18 18 C 1.39982 * 119.99824 * 153.33844 * 16 15 2 19 19 N 1.30821 * 120.00475 * 343.85456 * 18 16 15 20 20 Si 1.86800 * 119.99776 * 163.85213 * 18 16 15 21 21 H 1.48500 * 109.47194 * 89.99904 * 20 18 16 22 22 H 1.48503 * 109.47354 * 210.00331 * 20 18 16 23 23 H 1.48504 * 109.47257 * 330.00193 * 20 18 16 24 24 H 1.08998 * 109.46826 * 269.98265 * 1 2 3 25 25 H 1.08992 * 109.46737 * 29.98364 * 1 2 3 26 26 H 1.08994 * 109.46548 * 149.97969 * 1 2 3 27 27 H 1.07999 * 119.94336 * 0.02562 * 3 2 1 28 28 H 1.08000 * 120.05410 * 359.97438 * 6 5 4 29 29 H 1.08000 * 119.82135 * 179.74482 * 9 7 6 30 30 H 1.08000 * 119.95144 * 180.02562 * 10 9 7 31 31 H 0.96691 * 113.99832 * 270.01955 * 12 11 10 32 32 H 1.07994 * 119.94212 * 179.97438 * 13 4 3 33 33 H 1.08001 * 120.05881 * 180.02562 * 14 13 4 34 34 H 0.96993 * 119.99715 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1893 1.1791 0.0000 4 6 3.5893 1.1806 0.0005 5 6 4.3247 2.4632 0.0011 6 6 4.0045 3.4560 -0.9268 7 6 4.6909 4.6529 -0.9177 8 17 4.2876 5.8897 -2.0671 9 6 5.7049 4.8694 0.0023 10 6 6.0338 3.8919 0.9219 11 6 5.3504 2.6865 0.9292 12 8 5.6735 1.7252 1.8324 13 6 4.2954 -0.0286 0.0002 14 6 3.6227 -1.2128 0.0002 15 6 2.2130 -1.2198 -0.0005 16 6 1.5117 -2.4429 -0.0066 17 1 0.5164 -2.4967 0.4090 18 6 2.1056 -3.5875 -0.5513 19 7 3.1531 -3.4750 -1.3269 20 14 1.4023 -5.2757 -0.1708 21 1 0.3781 -5.6259 -1.1875 22 1 2.4923 -6.2838 -0.1986 23 1 0.7773 -5.2595 1.1762 24 1 -0.3633 -0.0003 1.0277 25 1 -0.3632 0.8901 -0.5136 26 1 -0.3632 -0.8898 -0.5141 27 1 1.6493 2.1144 0.0004 28 1 3.2183 3.2889 -1.6481 29 1 6.2404 5.8072 0.0005 30 1 6.8247 4.0676 1.6360 31 1 6.3544 1.1108 1.5261 32 1 5.3754 -0.0221 0.0002 33 1 4.1683 -2.1449 0.0004 34 1 3.5647 -4.2681 -1.7040 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245052754.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:42 Heat of formation + Delta-G solvation = -34.906797 kcal Electronic energy + Delta-G solvation = -19467.797992 eV Core-core repulsion = 16354.908724 eV Total energy + Delta-G solvation = -3112.889268 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.93777 -39.33620 -38.03881 -36.88453 -35.67856 -33.78746 -32.44985 -30.89161 -30.07902 -27.92640 -26.62739 -24.03698 -23.39779 -22.24566 -21.22930 -19.24483 -19.01906 -17.76882 -17.13533 -16.81396 -16.31308 -15.86317 -15.58405 -15.30303 -14.78819 -14.40402 -14.32753 -14.15949 -13.62441 -13.58751 -13.25486 -13.17006 -12.93139 -12.86303 -12.73896 -12.39587 -12.22606 -11.97907 -11.94252 -11.60527 -11.32534 -11.07916 -11.01078 -10.05692 -9.52929 -9.25449 -8.90408 -8.62685 -6.29330 0.02767 0.20124 1.00231 1.15468 1.20267 1.39266 1.49696 1.55120 2.19943 2.51498 2.77600 3.34198 3.69546 3.87126 3.93555 4.23694 4.41547 4.43199 4.47792 4.69875 4.72291 4.88966 4.98375 5.01807 5.09955 5.15407 5.22606 5.25856 5.39483 5.43553 5.52661 5.70112 5.78128 6.04128 6.15331 6.19211 6.38334 6.68054 6.85956 6.93386 7.04998 8.30567 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.025318 B = 0.004019 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.656676 B = 6964.411608 C = 7470.095600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.216 4.216 3 C -0.076 4.076 4 C -0.185 4.185 5 C -0.031 4.031 6 C -0.110 4.110 7 C -0.043 4.043 8 Cl -0.069 7.069 9 C -0.106 4.106 10 C -0.124 4.124 11 C 0.096 3.904 12 O -0.500 6.500 13 C -0.077 4.077 14 C -0.188 4.188 15 C 0.089 3.911 16 C -0.482 4.482 17 H 0.082 0.918 18 C 0.036 3.964 19 N -0.820 5.820 20 Si 0.978 3.022 21 H -0.262 1.262 22 H -0.267 1.267 23 H -0.259 1.259 24 H 0.052 0.948 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.106 0.894 28 H 0.126 0.874 29 H 0.162 0.838 30 H 0.163 0.837 31 H 0.400 0.600 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.232 10.527 1.256 11.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.217 4.217 3 C -0.094 4.094 4 C -0.186 4.186 5 C -0.032 4.032 6 C -0.129 4.129 7 C -0.070 4.070 8 Cl -0.040 7.040 9 C -0.124 4.124 10 C -0.142 4.142 11 C 0.051 3.949 12 O -0.312 6.312 13 C -0.095 4.095 14 C -0.208 4.208 15 C 0.086 3.914 16 C -0.511 4.511 17 H 0.100 0.900 18 C -0.179 4.179 19 N -0.445 5.445 20 Si 0.799 3.201 21 H -0.187 1.187 22 H -0.192 1.192 23 H -0.182 1.182 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.124 0.876 28 H 0.144 0.856 29 H 0.180 0.820 30 H 0.180 0.820 31 H 0.259 0.741 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.938 10.769 1.344 11.923 hybrid contribution 0.015 -1.187 -0.482 1.282 sum 4.952 9.582 0.862 10.820 Atomic orbital electron populations 1.20384 0.91561 1.01179 1.00550 1.19849 0.96231 0.92884 1.12776 1.20445 0.93074 0.96412 0.99467 1.18135 0.92590 0.91025 1.16900 1.19266 0.96331 0.93615 0.93984 1.21098 1.00730 0.91937 0.99125 1.20885 0.99845 0.90713 0.95530 1.98348 1.93403 1.52934 1.59345 1.21153 0.96518 1.00825 0.93953 1.21504 1.00664 0.92368 0.99686 1.18874 0.95705 0.90521 0.89813 1.84750 1.62586 1.43553 1.40318 1.20470 0.97817 0.91865 0.99375 1.20932 0.94722 0.96755 1.08378 1.17912 0.92472 0.92758 0.88224 1.19822 1.02584 0.93735 1.34979 0.90041 1.26767 0.94359 1.04887 0.91915 1.69869 1.19287 1.33359 1.21990 0.85253 0.78891 0.75977 0.79951 1.18695 1.19161 1.18249 0.92925 0.92222 0.92888 0.87614 0.85608 0.81999 0.81953 0.74134 0.87736 0.88064 0.90063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.27 9.40 71.24 0.67 -2.60 16 2 C -0.22 -10.40 5.90 -19.67 -0.12 -10.51 16 3 C -0.08 -3.40 9.08 22.23 0.20 -3.20 16 4 C -0.19 -8.04 5.30 -19.87 -0.11 -8.14 16 5 C -0.03 -1.12 5.48 -19.95 -0.11 -1.23 16 6 C -0.11 -3.57 9.28 22.54 0.21 -3.36 16 7 C -0.04 -1.16 6.31 22.30 0.14 -1.02 16 8 Cl -0.07 -1.65 28.95 -2.72 -0.08 -1.73 16 9 C -0.11 -2.40 9.82 22.34 0.22 -2.18 16 10 C -0.12 -2.96 9.97 22.33 0.22 -2.74 16 11 C 0.10 2.99 6.61 22.80 0.15 3.14 16 12 O -0.50 -15.52 12.12 -91.37 -1.11 -16.63 16 13 C -0.08 -3.50 8.70 22.23 0.19 -3.30 16 14 C -0.19 -9.73 8.60 22.47 0.19 -9.54 16 15 C 0.09 4.70 5.56 -21.27 -0.12 4.58 16 16 C -0.48 -25.16 8.09 23.37 0.19 -24.97 16 17 H 0.08 4.08 6.88 -2.91 -0.02 4.06 16 18 C 0.04 1.78 5.15 85.27 0.44 2.22 16 19 N -0.82 -41.80 10.97 21.83 0.24 -41.56 16 20 Si 0.98 37.15 29.59 68.60 2.03 39.18 16 21 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 22 H -0.27 -9.68 7.11 99.48 0.71 -8.98 16 23 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 24 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.06 2.12 8.08 -2.39 -0.02 2.10 16 26 H 0.05 2.22 6.77 -2.39 -0.02 2.21 16 27 H 0.11 4.26 8.04 -2.91 -0.02 4.23 16 28 H 0.13 4.17 8.04 -2.91 -0.02 4.15 16 29 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 30 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 31 H 0.40 9.33 8.23 -74.06 -0.61 8.72 16 32 H 0.10 4.11 7.08 -2.91 -0.02 4.09 16 33 H 0.10 5.44 6.24 -2.91 -0.02 5.42 16 34 H 0.29 13.30 8.29 -92.71 -0.77 12.54 16 Total: -1.00 -59.51 308.11 4.00 -55.51 By element: Atomic # 1 Polarization: 27.55 SS G_CDS: 0.53 Total: 28.08 kcal Atomic # 6 Polarization: -65.24 SS G_CDS: 2.38 Total: -62.86 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: 0.24 Total: -41.56 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -1.11 Total: -16.63 kcal Atomic # 14 Polarization: 37.15 SS G_CDS: 2.03 Total: 39.18 kcal Atomic # 17 Polarization: -1.65 SS G_CDS: -0.08 Total: -1.73 kcal Total: -59.51 4.00 -55.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245052754.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.608 kcal (2) G-P(sol) polarization free energy of solvation -59.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds