Wall clock time and date at job start Tue Mar 31 2020 05:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36234 * 119.94253 * 2 1 4 4 C 1.40932 * 119.88334 * 179.77556 * 3 2 1 5 5 C 1.40995 * 120.11049 * 180.25059 * 4 3 2 6 6 H 1.08008 * 119.99767 * 204.84655 * 5 4 3 7 7 C 1.39979 * 120.00292 * 24.85095 * 5 4 3 8 8 N 1.30820 * 119.99547 * 17.82321 * 7 5 4 9 9 Si 1.86799 * 120.00121 * 197.82850 * 7 5 4 10 10 H 1.48503 * 109.47114 * 89.99681 * 9 7 5 11 11 H 1.48495 * 109.46903 * 209.99358 * 9 7 5 12 12 H 1.48500 * 109.46989 * 329.99635 * 9 7 5 13 13 C 1.40978 * 119.77971 * 0.49655 * 4 3 2 14 14 C 1.36199 * 119.87544 * 359.75626 * 13 4 3 15 15 C 1.39992 * 119.94548 * 180.27213 * 2 1 3 16 16 C 1.47852 * 119.88194 * 359.95753 * 15 2 1 17 17 C 1.39617 * 120.17359 * 244.99225 * 16 15 2 18 18 C 1.37970 * 119.89290 * 180.02562 * 17 16 15 19 19 Cl 1.73604 * 119.87038 * 180.02562 * 18 17 16 20 20 C 1.38610 * 120.25514 * 0.03426 * 18 17 16 21 21 C 1.38189 * 120.35072 * 359.94360 * 20 18 17 22 22 C 1.38558 * 120.09753 * 359.77400 * 21 20 18 23 23 O 1.35806 * 120.12335 * 180.25107 * 22 21 20 24 24 H 1.08998 * 109.46929 * 269.72336 * 1 2 3 25 25 H 1.08996 * 109.46977 * 29.72174 * 1 2 3 26 26 H 1.09000 * 109.47014 * 149.73103 * 1 2 3 27 27 H 1.08004 * 120.05550 * 0.02562 * 3 2 1 28 28 H 0.97001 * 119.99567 * 180.02562 * 8 7 5 29 29 H 1.07999 * 120.06117 * 179.73025 * 13 4 3 30 30 H 1.07998 * 119.93736 * 179.97438 * 14 13 4 31 31 H 1.07993 * 120.04970 * 359.97438 * 17 16 15 32 32 H 1.07997 * 119.82459 * 179.97438 * 20 18 17 33 33 H 1.07998 * 119.94609 * 180.02562 * 21 20 18 34 34 H 0.96699 * 113.99564 * 270.27397 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1870 1.1805 0.0000 4 6 3.5963 1.1791 0.0048 5 6 4.3049 2.3980 0.0101 6 1 5.3114 2.4392 -0.3794 7 6 3.7039 3.5547 0.5203 8 7 2.6548 3.4590 1.2959 9 14 4.4000 5.2349 0.0936 10 1 3.7493 5.7411 -1.1415 11 1 4.1399 6.1768 1.2117 12 1 5.8639 5.1223 -0.1285 13 6 4.2953 -0.0452 -0.0011 14 6 3.6060 -1.2199 -0.0063 15 6 2.2058 -1.2130 -0.0058 16 6 1.4627 -2.4912 -0.0109 17 6 1.5518 -3.3591 1.0791 18 6 0.8563 -4.5506 1.0680 19 17 0.9670 -5.6291 2.4239 20 6 0.0697 -4.8900 -0.0217 21 6 -0.0263 -4.0385 -1.1058 22 6 0.6613 -2.8356 -1.1075 23 8 0.5633 -1.9960 -2.1705 24 1 -0.3633 -0.0050 1.0276 25 1 -0.3633 0.8924 -0.5095 26 1 -0.3633 -0.8876 -0.5180 27 1 1.6469 2.1158 0.0004 28 1 2.2381 4.2606 1.6492 29 1 5.3752 -0.0516 -0.0018 30 1 4.1404 -2.1584 -0.0111 31 1 2.1648 -3.0985 1.9292 32 1 -0.4714 -5.8246 -0.0232 33 1 -0.6414 -4.3093 -1.9512 34 1 1.2256 -2.1524 -2.8575 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245055633.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:18 Heat of formation + Delta-G solvation = -19.552678 kcal Electronic energy + Delta-G solvation = -19679.635451 eV Core-core repulsion = 16567.411988 eV Total energy + Delta-G solvation = -3112.223463 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.70523 -37.55786 -36.85384 -35.69246 -34.04176 -31.79988 -31.23605 -29.53398 -28.55709 -25.84327 -25.26666 -22.61226 -22.02020 -20.54648 -19.60940 -18.00736 -17.14203 -16.49824 -15.68268 -15.34557 -15.07423 -14.39351 -13.90903 -13.63999 -13.54784 -12.98195 -12.72828 -12.66398 -12.35172 -11.99659 -11.75777 -11.60421 -11.31427 -11.14922 -11.11861 -11.04631 -10.88563 -10.62481 -10.45465 -10.12043 -9.64772 -9.48651 -9.19840 -8.68818 -8.20472 -7.41775 -7.27046 -6.85915 -4.44040 1.28402 1.46225 2.26970 2.66524 3.01509 3.04926 3.06487 3.11340 3.75685 3.84866 4.47320 4.53829 5.03977 5.10601 5.44241 5.56136 5.65965 5.92011 6.05092 6.16865 6.21083 6.29428 6.37811 6.44996 6.52513 6.71424 6.79048 6.88309 6.91837 6.98050 7.24540 7.29366 7.57293 7.80783 7.96798 7.99850 8.08825 8.21758 8.54745 8.78558 8.89708 10.05775 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.027027 B = 0.004075 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.767691 B = 6869.855121 C = 7242.210759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.029 4.029 3 C -0.171 4.171 4 C 0.121 3.879 5 C -0.455 4.455 6 H 0.080 0.920 7 C 0.076 3.924 8 N -0.782 5.782 9 Si 0.909 3.091 10 H -0.266 1.266 11 H -0.277 1.277 12 H -0.261 1.261 13 C -0.234 4.234 14 C -0.064 4.064 15 C -0.208 4.208 16 C 0.007 3.993 17 C -0.100 4.100 18 C -0.041 4.041 19 Cl -0.085 7.085 20 C -0.120 4.120 21 C -0.137 4.137 22 C 0.107 3.893 23 O -0.484 6.484 24 H 0.049 0.951 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.118 0.882 28 H 0.283 0.717 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.133 0.867 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.991 -10.303 -2.771 11.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.029 4.029 3 C -0.190 4.190 4 C 0.119 3.881 5 C -0.483 4.483 6 H 0.098 0.902 7 C -0.144 4.144 8 N -0.406 5.406 9 Si 0.733 3.267 10 H -0.191 1.191 11 H -0.202 1.202 12 H -0.185 1.185 13 C -0.253 4.253 14 C -0.082 4.082 15 C -0.209 4.209 16 C 0.006 3.994 17 C -0.119 4.119 18 C -0.067 4.067 19 Cl -0.056 7.056 20 C -0.139 4.139 21 C -0.156 4.156 22 C 0.062 3.938 23 O -0.293 6.293 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.136 0.864 28 H 0.094 0.906 29 H 0.111 0.889 30 H 0.105 0.895 31 H 0.151 0.849 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -4.615 -10.003 -2.182 11.231 hybrid contribution 0.695 0.507 -0.154 0.874 sum -3.921 -9.496 -2.336 10.535 Atomic orbital electron populations 1.20766 0.93824 1.01573 1.00279 1.19145 0.93735 0.92412 0.97621 1.20855 0.94197 0.96163 1.07805 1.17678 0.92045 0.92051 0.86365 1.19639 1.01210 0.92592 1.34875 0.90209 1.25980 0.94207 1.01648 0.92528 1.69833 1.17770 1.31773 1.21219 0.86289 0.80530 0.80700 0.79137 1.19121 1.20197 1.18499 1.20627 0.97696 0.92499 1.14513 1.20233 0.92388 0.96450 0.99144 1.17641 0.92035 0.89310 1.21925 1.19291 0.93883 0.94231 0.91960 1.21253 0.99662 0.92111 0.98895 1.20828 1.02426 0.93160 0.90287 1.98340 1.97516 1.64629 1.45128 1.20742 1.00093 1.00436 0.92620 1.21224 1.01726 0.93454 0.99201 1.18699 0.97072 0.88943 0.89113 1.84821 1.57389 1.56941 1.30192 0.93228 0.93032 0.91776 0.86395 0.90615 0.88932 0.89487 0.84874 0.85411 0.85190 0.75868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.19 9.42 36.01 0.34 -1.85 16 2 C -0.03 -0.66 5.64 -104.69 -0.59 -1.25 16 3 C -0.17 -4.34 8.26 -39.28 -0.32 -4.66 16 4 C 0.12 3.14 5.57 -106.80 -0.60 2.54 16 5 C -0.45 -11.68 9.03 -37.89 -0.34 -12.02 16 6 H 0.08 1.97 7.91 -52.48 -0.42 1.55 16 7 C 0.08 1.84 5.13 -17.33 -0.09 1.76 16 8 N -0.78 -19.68 10.96 55.55 0.61 -19.07 16 9 Si 0.91 18.07 29.60 -169.99 -5.03 13.04 16 10 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 11 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 12 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 13 C -0.23 -5.56 9.73 -39.28 -0.38 -5.94 16 14 C -0.06 -1.38 9.66 -39.65 -0.38 -1.77 16 15 C -0.21 -4.43 4.97 -104.64 -0.52 -4.95 16 16 C 0.01 0.13 4.62 -104.74 -0.48 -0.35 16 17 C -0.10 -1.68 9.51 -39.17 -0.37 -2.06 16 18 C -0.04 -0.60 6.31 -39.54 -0.25 -0.84 16 19 Cl -0.08 -1.12 28.95 -51.86 -1.50 -2.62 16 20 C -0.12 -1.58 9.82 -39.46 -0.39 -1.97 16 21 C -0.14 -1.85 9.97 -39.48 -0.39 -2.24 16 22 C 0.11 1.70 5.29 -38.76 -0.21 1.50 16 23 O -0.48 -7.51 11.41 -19.13 -0.22 -7.73 16 24 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 26 H 0.06 1.24 4.61 -51.93 -0.24 1.00 16 27 H 0.12 3.12 6.17 -52.48 -0.32 2.79 16 28 H 0.28 6.46 8.30 -40.82 -0.34 6.13 16 29 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 30 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 32 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 33 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 34 H 0.39 4.48 9.06 45.56 0.41 4.90 16 LS Contribution 307.73 15.07 4.64 4.64 Total: -1.00 -27.06 307.73 -9.14 -36.20 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -2.66 Total: 9.64 kcal Atomic # 6 Polarization: -29.12 SS G_CDS: -4.98 Total: -34.10 kcal Atomic # 7 Polarization: -19.68 SS G_CDS: 0.61 Total: -19.07 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: -0.22 Total: -7.73 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -1.50 Total: -2.62 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.06 -9.14 -36.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245055633.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.650 kcal (2) G-P(sol) polarization free energy of solvation -27.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds