Wall clock time and date at job start Tue Mar 31 2020 05:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.36217 * 119.94547 * 2 1 4 4 C 1.40942 * 119.88850 * 179.72093 * 3 2 1 5 5 C 1.40985 * 120.11754 * 180.25423 * 4 3 2 6 6 H 1.08001 * 120.00026 * 204.88377 * 5 4 3 7 7 C 1.39972 * 119.99815 * 24.88532 * 5 4 3 8 8 N 1.30824 * 120.00237 * 17.80739 * 7 5 4 9 9 Si 1.86799 * 119.99915 * 197.80974 * 7 5 4 10 10 H 1.48505 * 109.47225 * 59.99952 * 9 7 5 11 11 H 1.48496 * 109.47211 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47028 * 300.00222 * 9 7 5 13 13 C 1.40974 * 119.77086 * 0.54724 * 4 3 2 14 14 C 1.36193 * 119.88680 * 359.43291 * 13 4 3 15 15 C 1.39996 * 119.93940 * 179.97438 * 2 1 3 16 16 C 1.47847 * 119.88756 * 0.02761 * 15 2 1 17 17 C 1.39725 * 120.09396 * 244.97264 * 16 15 2 18 18 C 1.37734 * 119.91979 * 179.97438 * 17 16 15 19 19 C 1.39009 * 120.12434 * 0.02562 * 18 17 16 20 20 O 1.35804 * 119.90620 * 179.97438 * 19 18 17 21 21 C 1.38897 * 120.18977 * 359.97247 * 19 18 17 22 22 C 1.37927 * 120.07564 * 359.76871 * 21 19 18 23 23 Cl 1.73605 * 120.05946 * 180.27469 * 22 21 19 24 24 H 1.08999 * 109.47461 * 270.02694 * 1 2 3 25 25 H 1.09000 * 109.47281 * 30.02840 * 1 2 3 26 26 H 1.09004 * 109.47302 * 150.02031 * 1 2 3 27 27 H 1.08007 * 120.05797 * 359.96804 * 3 2 1 28 28 H 0.96993 * 119.99879 * 180.02562 * 8 7 5 29 29 H 1.08005 * 120.05925 * 179.69783 * 13 4 3 30 30 H 1.07995 * 119.94809 * 180.27780 * 14 13 4 31 31 H 1.08001 * 120.03522 * 0.03134 * 17 16 15 32 32 H 1.08007 * 119.93735 * 180.02562 * 18 17 16 33 33 H 0.96706 * 113.99701 * 89.99764 * 20 19 18 34 34 H 1.07997 * 119.96243 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1869 1.1803 0.0000 4 6 3.5963 1.1789 0.0060 5 6 4.3049 2.3977 0.0114 6 1 5.3115 2.4389 -0.3778 7 6 3.7038 3.5544 0.5213 8 7 2.6542 3.4590 1.2963 9 14 4.4004 5.2345 0.0951 10 1 4.3601 5.4282 -1.3767 11 1 3.5890 6.2887 0.7549 12 1 5.8055 5.3221 0.5675 13 6 4.2951 -0.0454 0.0002 14 6 3.6060 -1.2201 0.0006 15 6 2.2056 -1.2131 0.0005 16 6 1.4625 -2.4913 0.0005 17 6 1.5521 -3.3538 1.0961 18 6 0.8579 -4.5434 1.0925 19 6 0.0690 -4.8875 0.0009 20 8 -0.6132 -6.0617 0.0018 21 6 -0.0236 -4.0337 -1.0908 22 6 0.6640 -2.8380 -1.0934 23 17 0.5423 -1.7680 -2.4550 24 1 -0.3634 0.0005 1.0276 25 1 -0.3634 0.8897 -0.5143 26 1 -0.3634 -0.8902 -0.5135 27 1 1.6469 2.1157 -0.0005 28 1 2.2375 4.2605 1.6493 29 1 5.3751 -0.0519 -0.0002 30 1 4.1403 -2.1586 0.0007 31 1 2.1642 -3.0875 1.9451 32 1 0.9265 -5.2101 1.9394 33 1 -1.5030 -5.9994 0.3755 34 1 -0.6378 -4.3045 -1.9368 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245081582.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:10 Heat of formation + Delta-G solvation = -17.060300 kcal Electronic energy + Delta-G solvation = -19651.585970 eV Core-core repulsion = 16539.470584 eV Total energy + Delta-G solvation = -3112.115386 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.63942 -37.97868 -36.61748 -35.70407 -33.91725 -31.72694 -30.83401 -30.40747 -28.32296 -25.88178 -25.04027 -22.59952 -22.16982 -20.55687 -19.58817 -18.38713 -17.15693 -16.16224 -15.72739 -15.40562 -15.23648 -14.27735 -14.05726 -13.79387 -13.49733 -13.01405 -12.96937 -12.58356 -12.39876 -12.04819 -11.79837 -11.52771 -11.41006 -11.17806 -11.01066 -10.77969 -10.56124 -10.50911 -10.39949 -10.26144 -9.65934 -9.47970 -9.17831 -8.67178 -8.22945 -7.39922 -7.24868 -6.85110 -4.42466 1.31021 1.42541 2.53965 2.67358 3.01379 3.03499 3.08324 3.13264 3.75277 3.85523 4.31967 4.49834 5.04136 5.21627 5.36886 5.56115 5.67084 5.86434 6.01929 6.07966 6.13774 6.32985 6.39469 6.45753 6.51370 6.68915 6.72411 6.85910 6.90736 6.98331 7.25164 7.30686 7.58294 7.65524 7.84042 7.98912 8.07865 8.22834 8.55500 8.79900 8.91180 10.06568 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.030983 B = 0.004319 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.497136 B = 6481.695213 C = 6735.235006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.033 4.033 3 C -0.168 4.168 4 C 0.122 3.878 5 C -0.455 4.455 6 H 0.079 0.921 7 C 0.077 3.923 8 N -0.783 5.783 9 Si 0.908 3.092 10 H -0.262 1.262 11 H -0.277 1.277 12 H -0.264 1.264 13 C -0.233 4.233 14 C -0.059 4.059 15 C -0.210 4.210 16 C 0.024 3.976 17 C -0.098 4.098 18 C -0.138 4.138 19 C 0.085 3.915 20 O -0.498 6.498 21 C -0.138 4.138 22 C -0.026 4.026 23 Cl -0.057 7.057 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.118 0.882 28 H 0.283 0.717 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.133 0.867 32 H 0.127 0.873 33 H 0.385 0.615 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.281 -8.954 -0.919 10.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.033 4.033 3 C -0.188 4.188 4 C 0.120 3.880 5 C -0.483 4.483 6 H 0.097 0.903 7 C -0.143 4.143 8 N -0.407 5.407 9 Si 0.733 3.267 10 H -0.187 1.187 11 H -0.202 1.202 12 H -0.189 1.189 13 C -0.253 4.253 14 C -0.077 4.077 15 C -0.211 4.211 16 C 0.023 3.977 17 C -0.117 4.117 18 C -0.157 4.157 19 C 0.040 3.960 20 O -0.307 6.307 21 C -0.157 4.157 22 C -0.053 4.053 23 Cl -0.028 7.028 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.136 0.864 28 H 0.094 0.906 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.151 0.849 32 H 0.145 0.855 33 H 0.240 0.760 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.944 -8.919 -1.151 10.780 hybrid contribution -0.159 1.009 0.041 1.022 sum -6.103 -7.910 -1.110 10.052 Atomic orbital electron populations 1.20901 0.94032 1.01460 1.00565 1.19100 0.93531 0.92509 0.98179 1.20822 0.94198 0.96083 1.07658 1.17661 0.92036 0.92022 0.86322 1.19596 1.01200 0.92608 1.34919 0.90265 1.25964 0.94194 1.01586 0.92533 1.69820 1.17760 1.31831 1.21293 0.86358 0.79906 0.80400 0.80084 1.18693 1.20230 1.18884 1.20622 0.97702 0.92496 1.14447 1.20202 0.92305 0.96478 0.98709 1.17681 0.92251 0.89276 1.21934 1.18954 0.93225 0.94696 0.90807 1.21273 0.99366 0.93043 0.97979 1.21380 0.99093 0.97187 0.98009 1.18205 0.97632 0.86320 0.93795 1.84816 1.31657 1.29007 1.85249 1.21118 1.01950 0.92852 0.99767 1.20973 1.01454 0.92228 0.90669 1.98358 1.96947 1.64671 1.42861 0.93022 0.92874 0.92361 0.86411 0.90606 0.88922 0.89427 0.84867 0.85506 0.76031 0.85124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.20 9.06 36.00 0.33 -1.87 16 2 C -0.03 -0.74 5.28 -104.69 -0.55 -1.29 16 3 C -0.17 -4.25 8.26 -39.29 -0.32 -4.57 16 4 C 0.12 3.17 5.57 -106.80 -0.60 2.58 16 5 C -0.45 -11.72 9.03 -37.89 -0.34 -12.06 16 6 H 0.08 1.96 7.91 -52.49 -0.42 1.54 16 7 C 0.08 1.86 5.13 -17.33 -0.09 1.77 16 8 N -0.78 -19.57 10.96 55.55 0.61 -18.96 16 9 Si 0.91 18.11 29.60 -169.99 -5.03 13.08 16 10 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 11 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 12 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 13 C -0.23 -5.60 9.73 -39.28 -0.38 -5.98 16 14 C -0.06 -1.29 9.66 -39.64 -0.38 -1.68 16 15 C -0.21 -4.50 4.69 -104.63 -0.49 -4.99 16 16 C 0.02 0.44 4.62 -104.82 -0.48 -0.04 16 17 C -0.10 -1.57 9.73 -39.21 -0.38 -1.95 16 18 C -0.14 -1.90 9.97 -39.48 -0.39 -2.30 16 19 C 0.08 1.17 6.71 -39.05 -0.26 0.90 16 20 O -0.50 -5.76 13.49 -19.13 -0.26 -6.02 16 21 C -0.14 -2.02 9.75 -39.45 -0.38 -2.40 16 22 C -0.03 -0.45 5.06 -39.11 -0.20 -0.65 16 23 Cl -0.06 -0.99 25.42 -51.86 -1.32 -2.31 16 24 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 25 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 26 H 0.06 1.05 4.20 -51.93 -0.22 0.83 16 27 H 0.12 3.08 6.17 -52.48 -0.32 2.76 16 28 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 29 H 0.09 2.10 8.06 -52.48 -0.42 1.67 16 30 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 31 H 0.13 2.03 8.06 -52.49 -0.42 1.61 16 32 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 33 H 0.38 2.52 9.06 45.56 0.41 2.93 16 34 H 0.13 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 305.20 15.07 4.60 4.60 Total: -1.00 -27.59 305.20 -8.97 -36.56 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -2.63 Total: 7.58 kcal Atomic # 6 Polarization: -29.59 SS G_CDS: -4.94 Total: -34.53 kcal Atomic # 7 Polarization: -19.57 SS G_CDS: 0.61 Total: -18.96 kcal Atomic # 8 Polarization: -5.76 SS G_CDS: -0.26 Total: -6.02 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.08 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.32 Total: -2.31 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.59 -8.97 -36.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245081582.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.503 kcal (2) G-P(sol) polarization free energy of solvation -27.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds