Wall clock time and date at job start Tue Mar 31 2020 05:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.36217 * 119.94547 * 2 1 4 4 C 1.40942 * 119.88850 * 179.72093 * 3 2 1 5 5 C 1.40985 * 120.11754 * 180.25423 * 4 3 2 6 6 H 1.08001 * 120.00026 * 204.88377 * 5 4 3 7 7 C 1.39972 * 119.99815 * 24.88532 * 5 4 3 8 8 N 1.30824 * 120.00237 * 17.80739 * 7 5 4 9 9 Si 1.86799 * 119.99915 * 197.80974 * 7 5 4 10 10 H 1.48505 * 109.47225 * 59.99952 * 9 7 5 11 11 H 1.48496 * 109.47211 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47028 * 300.00222 * 9 7 5 13 13 C 1.40974 * 119.77086 * 0.54724 * 4 3 2 14 14 C 1.36193 * 119.88680 * 359.43291 * 13 4 3 15 15 C 1.39996 * 119.93940 * 179.97438 * 2 1 3 16 16 C 1.47847 * 119.88756 * 0.02761 * 15 2 1 17 17 C 1.39725 * 120.09396 * 244.97264 * 16 15 2 18 18 C 1.37734 * 119.91979 * 179.97438 * 17 16 15 19 19 C 1.39009 * 120.12434 * 0.02562 * 18 17 16 20 20 O 1.35804 * 119.90620 * 179.97438 * 19 18 17 21 21 C 1.38897 * 120.18977 * 359.97247 * 19 18 17 22 22 C 1.37927 * 120.07564 * 359.76871 * 21 19 18 23 23 Cl 1.73605 * 120.05946 * 180.27469 * 22 21 19 24 24 H 1.08999 * 109.47461 * 270.02694 * 1 2 3 25 25 H 1.09000 * 109.47281 * 30.02840 * 1 2 3 26 26 H 1.09004 * 109.47302 * 150.02031 * 1 2 3 27 27 H 1.08007 * 120.05797 * 359.96804 * 3 2 1 28 28 H 0.96993 * 119.99879 * 180.02562 * 8 7 5 29 29 H 1.08005 * 120.05925 * 179.69783 * 13 4 3 30 30 H 1.07995 * 119.94809 * 180.27780 * 14 13 4 31 31 H 1.08001 * 120.03522 * 0.03134 * 17 16 15 32 32 H 1.08007 * 119.93735 * 180.02562 * 18 17 16 33 33 H 0.96706 * 113.99701 * 89.99764 * 20 19 18 34 34 H 1.07997 * 119.96243 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1869 1.1803 0.0000 4 6 3.5963 1.1789 0.0060 5 6 4.3049 2.3977 0.0114 6 1 5.3115 2.4389 -0.3778 7 6 3.7038 3.5544 0.5213 8 7 2.6542 3.4590 1.2963 9 14 4.4004 5.2345 0.0951 10 1 4.3601 5.4282 -1.3767 11 1 3.5890 6.2887 0.7549 12 1 5.8055 5.3221 0.5675 13 6 4.2951 -0.0454 0.0002 14 6 3.6060 -1.2201 0.0006 15 6 2.2056 -1.2131 0.0005 16 6 1.4625 -2.4913 0.0005 17 6 1.5521 -3.3538 1.0961 18 6 0.8579 -4.5434 1.0925 19 6 0.0690 -4.8875 0.0009 20 8 -0.6132 -6.0617 0.0018 21 6 -0.0236 -4.0337 -1.0908 22 6 0.6640 -2.8380 -1.0934 23 17 0.5423 -1.7680 -2.4550 24 1 -0.3634 0.0005 1.0276 25 1 -0.3634 0.8897 -0.5143 26 1 -0.3634 -0.8902 -0.5135 27 1 1.6469 2.1157 -0.0005 28 1 2.2375 4.2605 1.6493 29 1 5.3751 -0.0519 -0.0002 30 1 4.1403 -2.1586 0.0007 31 1 2.1642 -3.0875 1.9451 32 1 0.9265 -5.2101 1.9394 33 1 -1.5030 -5.9994 0.3755 34 1 -0.6378 -4.3045 -1.9368 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245081582.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:09 Heat of formation + Delta-G solvation = -31.370319 kcal Electronic energy + Delta-G solvation = -19652.206499 eV Core-core repulsion = 16539.470584 eV Total energy + Delta-G solvation = -3112.735915 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.88658 -39.52034 -37.90958 -36.96899 -35.65242 -33.45227 -32.30329 -31.70787 -29.88117 -27.61733 -26.68501 -23.90490 -23.51005 -22.20002 -21.30275 -19.41830 -19.01029 -17.57827 -17.01926 -16.90794 -16.49825 -15.72328 -15.58806 -15.33221 -14.79414 -14.56105 -14.49518 -14.06916 -13.90567 -13.54732 -13.27341 -13.14348 -12.90515 -12.84869 -12.68850 -12.21824 -12.16782 -11.99714 -11.63192 -11.53423 -11.39949 -11.24917 -10.97887 -9.86999 -9.58970 -9.22138 -8.97048 -8.63853 -6.32853 0.08457 0.24413 0.95734 1.22393 1.25940 1.37480 1.48120 1.52783 2.19252 2.54163 2.71933 3.31508 3.69235 3.92946 4.00676 4.17331 4.37588 4.41706 4.47676 4.68274 4.69619 4.88575 4.91528 4.95512 5.12170 5.15027 5.19212 5.33427 5.34963 5.50889 5.51812 5.70823 5.76217 6.04967 6.12887 6.26413 6.39052 6.69751 6.87280 6.92611 7.05397 8.29515 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.030983 B = 0.004319 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.497136 B = 6481.695213 C = 6735.235006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.041 4.041 3 C -0.191 4.191 4 C 0.090 3.910 5 C -0.496 4.496 6 H 0.075 0.925 7 C 0.039 3.961 8 N -0.816 5.816 9 Si 0.979 3.021 10 H -0.262 1.262 11 H -0.266 1.266 12 H -0.259 1.259 13 C -0.250 4.250 14 C -0.065 4.065 15 C -0.192 4.192 16 C -0.011 4.011 17 C -0.098 4.098 18 C -0.131 4.131 19 C 0.107 3.893 20 O -0.499 6.499 21 C -0.139 4.139 22 C -0.032 4.032 23 Cl -0.070 7.070 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.074 0.926 27 H 0.099 0.901 28 H 0.289 0.711 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.136 0.864 32 H 0.157 0.843 33 H 0.412 0.588 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.537 -11.127 -0.678 13.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.041 4.041 3 C -0.211 4.211 4 C 0.088 3.912 5 C -0.525 4.525 6 H 0.093 0.907 7 C -0.178 4.178 8 N -0.441 5.441 9 Si 0.800 3.200 10 H -0.187 1.187 11 H -0.190 1.190 12 H -0.183 1.183 13 C -0.269 4.269 14 C -0.084 4.084 15 C -0.193 4.193 16 C -0.012 4.012 17 C -0.116 4.116 18 C -0.149 4.149 19 C 0.062 3.938 20 O -0.313 6.313 21 C -0.158 4.158 22 C -0.059 4.059 23 Cl -0.041 7.041 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.093 0.907 27 H 0.117 0.883 28 H 0.100 0.900 29 H 0.114 0.886 30 H 0.129 0.871 31 H 0.154 0.846 32 H 0.175 0.825 33 H 0.272 0.728 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.226 -11.117 -0.900 13.289 hybrid contribution 0.089 1.332 -0.014 1.335 sum -7.137 -9.784 -0.914 12.145 Atomic orbital electron populations 1.20873 0.91949 1.02223 1.01223 1.19440 0.95227 0.92221 0.97194 1.20782 0.94198 0.96425 1.09653 1.17990 0.92750 0.92971 0.87511 1.19810 1.01632 0.93937 1.37127 0.90657 1.26745 0.94389 1.04860 0.91762 1.69871 1.19021 1.33070 1.22155 0.85293 0.79370 0.75710 0.79625 1.18660 1.19011 1.18283 1.20792 0.98088 0.92866 1.15198 1.20495 0.93049 0.96681 0.98135 1.17989 0.92255 0.90587 1.18485 1.18821 0.95272 0.94254 0.92861 1.21318 0.99553 0.93462 0.97283 1.21626 0.97820 0.96515 0.98942 1.18246 0.96632 0.86036 0.92883 1.84758 1.33442 1.27523 1.85536 1.21314 1.01632 0.91988 1.00839 1.21009 1.01797 0.93055 0.90052 1.98358 1.97012 1.65245 1.43445 0.92288 0.92919 0.90729 0.88272 0.89998 0.88634 0.87149 0.84591 0.82518 0.72849 0.83286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.11 9.06 71.23 0.65 -3.47 16 2 C -0.04 -1.86 5.28 -19.91 -0.11 -1.97 16 3 C -0.19 -10.09 8.26 22.46 0.19 -9.90 16 4 C 0.09 4.91 5.57 -21.27 -0.12 4.80 16 5 C -0.50 -26.93 9.03 23.36 0.21 -26.72 16 6 H 0.08 3.95 7.91 -2.91 -0.02 3.92 16 7 C 0.04 1.94 5.13 85.26 0.44 2.38 16 8 N -0.82 -42.45 10.96 21.83 0.24 -42.21 16 9 Si 0.98 38.10 29.60 68.60 2.03 40.13 16 10 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 11 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 12 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 13 C -0.25 -12.45 9.73 22.46 0.22 -12.23 16 14 C -0.07 -2.91 9.66 22.23 0.21 -2.69 16 15 C -0.19 -8.19 4.69 -19.87 -0.09 -8.29 16 16 C -0.01 -0.39 4.62 -20.00 -0.09 -0.49 16 17 C -0.10 -2.86 9.73 22.51 0.22 -2.64 16 18 C -0.13 -3.04 9.97 22.34 0.22 -2.82 16 19 C 0.11 2.45 6.71 22.61 0.15 2.61 16 20 O -0.50 -8.94 13.49 -91.35 -1.23 -10.17 16 21 C -0.14 -3.58 9.75 22.35 0.22 -3.36 16 22 C -0.03 -1.03 5.06 22.58 0.11 -0.92 16 23 Cl -0.07 -2.34 25.42 -2.72 -0.07 -2.40 16 24 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 25 H 0.05 2.00 8.08 -2.39 -0.02 1.99 16 26 H 0.07 2.62 4.20 -2.38 -0.01 2.61 16 27 H 0.10 5.50 6.17 -2.91 -0.02 5.48 16 28 H 0.29 13.60 8.30 -92.71 -0.77 12.83 16 29 H 0.10 4.52 8.06 -2.91 -0.02 4.50 16 30 H 0.11 4.30 8.06 -2.91 -0.02 4.28 16 31 H 0.14 3.85 8.06 -2.91 -0.02 3.82 16 32 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 33 H 0.41 3.11 9.06 -74.05 -0.67 2.44 16 34 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -61.64 305.20 3.87 -57.77 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 0.47 Total: 22.60 kcal Atomic # 6 Polarization: -68.14 SS G_CDS: 2.43 Total: -65.71 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: 0.24 Total: -42.21 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -1.23 Total: -10.17 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 2.03 Total: 40.13 kcal Atomic # 17 Polarization: -2.34 SS G_CDS: -0.07 Total: -2.40 kcal Total: -61.64 3.87 -57.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245081582.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.400 kcal (2) G-P(sol) polarization free energy of solvation -61.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds