Wall clock time and date at job start Tue Mar 31 2020 05:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38888 * 119.24097 * 2 1 4 4 C 1.36868 * 119.82511 * 179.97438 * 3 2 1 5 5 C 1.41121 * 118.40281 * 0.02562 * 4 3 2 6 6 C 1.40820 * 120.72429 * 180.02562 * 5 4 3 7 7 H 1.08007 * 120.00147 * 205.88322 * 6 5 4 8 8 C 1.40031 * 120.00000 * 25.88942 * 6 5 4 9 9 N 1.30808 * 119.99898 * 13.93098 * 8 6 5 10 10 Si 1.86800 * 120.00103 * 193.93218 * 8 6 5 11 11 H 1.48500 * 109.46888 * 89.99608 * 10 8 6 12 12 H 1.48500 * 109.46938 * 209.99874 * 10 8 6 13 13 H 1.48500 * 109.47105 * 329.99923 * 10 8 6 14 14 C 1.41965 * 118.55253 * 0.02562 * 5 4 3 15 15 C 1.47585 * 120.00502 * 180.02562 * 14 5 4 16 16 C 1.39859 * 120.08182 * 49.86140 * 15 14 5 17 17 C 1.37606 * 119.93726 * 179.76643 * 16 15 14 18 18 C 1.39272 * 120.10149 * 0.49052 * 17 16 15 19 19 N 1.39229 * 119.91070 * 179.76473 * 18 17 16 20 20 C 1.39138 * 120.17070 * 359.78317 * 18 17 16 21 21 C 1.37804 * 120.06284 * 359.95865 * 20 18 17 22 22 Cl 1.73600 * 120.05589 * 180.02562 * 21 20 18 23 23 N 1.31718 * 119.23696 * 179.73285 * 2 1 3 24 24 H 1.09000 * 109.47168 * 89.99692 * 1 2 3 25 25 H 1.08997 * 109.47319 * 210.00011 * 1 2 3 26 26 H 1.09005 * 109.47031 * 329.99749 * 1 2 3 27 27 H 1.08001 * 120.08800 * 0.02562 * 3 2 1 28 28 H 1.07996 * 120.80444 * 180.02562 * 4 3 2 29 29 H 0.96990 * 120.00151 * 180.02562 * 9 8 6 30 30 H 1.07999 * 120.03106 * 359.97438 * 16 15 14 31 31 H 1.08000 * 119.94908 * 180.22557 * 17 16 15 32 32 H 0.96998 * 119.99981 * 180.02562 * 19 18 17 33 33 H 0.97001 * 120.00515 * 0.02562 * 19 18 17 34 34 H 1.07999 * 119.96708 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1855 1.2119 0.0000 4 6 3.5541 1.2259 0.0005 5 6 4.2379 -0.0086 0.0005 6 6 5.6455 -0.0513 0.0016 7 1 6.1601 -0.9086 -0.4067 8 6 6.3780 1.0178 0.5321 9 7 5.7793 1.9210 1.2648 10 14 8.2100 1.1539 0.1936 11 1 8.4271 1.9439 -1.0449 12 1 8.8754 1.8309 1.3356 13 1 8.7838 -0.2048 0.0210 14 6 3.4760 -1.2064 -0.0006 15 6 4.1583 -2.5151 -0.0001 16 6 5.1730 -2.7763 0.9262 17 6 5.8039 -3.9992 0.9272 18 6 5.4404 -4.9734 0.0006 19 7 6.0847 -6.2076 0.0020 20 6 4.4353 -4.7162 -0.9266 21 6 3.7954 -3.4958 -0.9303 22 17 2.5410 -3.1754 -2.0868 23 7 2.1503 -1.1494 0.0054 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6345 2.1408 0.0004 28 1 4.0976 2.1590 0.0010 29 1 6.2866 2.6617 1.6320 30 1 5.4590 -2.0200 1.6423 31 1 6.5850 -4.2024 1.6448 32 1 5.8328 -6.8869 -0.6430 33 1 6.7855 -6.3883 0.6479 34 1 4.1564 -5.4739 -1.6439 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245505210.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:48 Heat of formation + Delta-G solvation = 16.571204 kcal Electronic energy + Delta-G solvation = -19979.947216 eV Core-core repulsion = 16901.582953 eV Total energy + Delta-G solvation = -3078.364263 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.70400 -39.60213 -37.23217 -36.12835 -35.41279 -32.97767 -32.47164 -31.55715 -29.69171 -28.94286 -25.91281 -23.91751 -23.67867 -22.36496 -21.69332 -19.19510 -18.14344 -17.74948 -17.30862 -17.08008 -16.16874 -15.66263 -15.32452 -15.21453 -14.66631 -14.61025 -14.38659 -14.29489 -13.83328 -13.39039 -13.21915 -13.09873 -12.83907 -12.73485 -12.59387 -12.56603 -12.17253 -12.07421 -11.68901 -11.47995 -11.17484 -11.06660 -10.01594 -9.80548 -9.60780 -9.32228 -8.66801 -8.16438 -6.29944 0.34906 0.51698 0.94639 1.26257 1.39179 1.45159 1.51392 1.53835 2.19274 2.76058 2.93964 3.11705 3.72883 3.92958 4.08496 4.30737 4.42865 4.51290 4.67891 4.70629 4.84668 4.99637 5.02878 5.04346 5.07377 5.21009 5.26914 5.32980 5.41258 5.57816 5.77109 5.85212 5.92500 6.10408 6.15827 6.58059 6.64860 6.81800 6.89779 7.11068 7.86136 8.28492 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.011244 B = 0.008710 C = 0.005388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2489.664500 B = 3214.005708 C = 5195.276390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.022 4.022 3 C -0.151 4.151 4 C -0.154 4.154 5 C 0.052 3.948 6 C -0.456 4.456 7 H 0.081 0.919 8 C 0.038 3.962 9 N -0.819 5.819 10 Si 0.976 3.024 11 H -0.265 1.265 12 H -0.267 1.267 13 H -0.254 1.254 14 C 0.020 3.980 15 C -0.064 4.064 16 C -0.045 4.045 17 C -0.198 4.198 18 C 0.227 3.773 19 N -0.857 5.857 20 C -0.204 4.204 21 C 0.011 3.989 22 Cl -0.076 7.076 23 N -0.452 5.452 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.121 0.879 28 H 0.115 0.885 29 H 0.290 0.710 30 H 0.116 0.884 31 H 0.148 0.852 32 H 0.408 0.592 33 H 0.410 0.590 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.385 -9.985 -1.449 10.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.163 4.163 3 C -0.171 4.171 4 C -0.180 4.180 5 C 0.048 3.952 6 C -0.485 4.485 7 H 0.099 0.901 8 C -0.178 4.178 9 N -0.445 5.445 10 Si 0.796 3.204 11 H -0.190 1.190 12 H -0.191 1.191 13 H -0.178 1.178 14 C -0.119 4.119 15 C -0.067 4.067 16 C -0.065 4.065 17 C -0.221 4.221 18 C 0.120 3.880 19 N -0.398 5.398 20 C -0.227 4.227 21 C -0.017 4.017 22 Cl -0.047 7.047 23 N -0.160 5.160 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.092 0.908 27 H 0.139 0.861 28 H 0.133 0.867 29 H 0.101 0.899 30 H 0.134 0.866 31 H 0.165 0.835 32 H 0.238 0.762 33 H 0.240 0.760 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.814 -10.485 -1.392 10.732 hybrid contribution 1.091 1.232 -0.143 1.652 sum 2.905 -9.253 -1.535 9.819 Atomic orbital electron populations 1.20298 0.88588 1.01976 1.01523 1.20992 0.96998 0.88224 1.10076 1.21511 0.94977 0.98409 1.02193 1.21443 0.93603 0.98473 1.04519 1.18685 0.94983 0.91490 0.90076 1.19607 0.91025 1.03677 1.34190 0.90053 1.26746 1.05539 0.93611 0.91919 1.69821 1.40508 1.10929 1.23194 0.85275 0.76208 0.79949 0.78918 1.19031 1.19104 1.17766 1.19683 0.88626 0.91867 1.11703 1.18177 0.98827 0.92044 0.97665 1.20981 0.93134 0.96221 0.96133 1.20733 1.05148 0.93188 1.03039 1.17530 0.90788 0.87287 0.92399 1.42167 1.43271 1.12691 1.41656 1.20353 1.01326 0.96711 1.04329 1.20878 0.92674 0.95216 0.92920 1.98308 1.52287 1.95963 1.58178 1.67074 1.09486 1.29516 1.09925 0.91969 0.92479 0.90768 0.86140 0.86677 0.89886 0.86597 0.83460 0.76183 0.75963 0.83668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.40 10.15 71.24 0.72 -1.68 16 2 C -0.02 -1.02 6.79 42.73 0.29 -0.73 16 3 C -0.15 -7.17 9.64 22.10 0.21 -6.96 16 4 C -0.15 -8.16 8.73 22.66 0.20 -7.96 16 5 C 0.05 2.81 5.57 -21.02 -0.12 2.69 16 6 C -0.46 -23.53 7.14 23.34 0.17 -23.36 16 7 H 0.08 4.14 6.59 -2.91 -0.02 4.13 16 8 C 0.04 1.82 5.23 85.28 0.45 2.26 16 9 N -0.82 -41.01 10.86 21.84 0.24 -40.77 16 10 Si 0.98 36.74 29.58 68.60 2.03 38.77 16 11 H -0.27 -9.87 7.11 99.48 0.71 -9.17 16 12 H -0.27 -9.51 7.11 99.48 0.71 -8.81 16 13 H -0.25 -9.29 7.11 99.48 0.71 -8.58 16 14 C 0.02 1.03 5.84 42.41 0.25 1.28 16 15 C -0.06 -2.89 5.07 -20.00 -0.10 -2.99 16 16 C -0.04 -1.83 7.96 22.51 0.18 -1.65 16 17 C -0.20 -6.26 9.87 22.37 0.22 -6.04 16 18 C 0.23 6.34 6.76 38.43 0.26 6.60 16 19 N -0.86 -15.05 9.06 -51.28 -0.46 -15.51 16 20 C -0.20 -6.49 9.65 22.38 0.22 -6.28 16 21 C 0.01 0.45 6.33 22.58 0.14 0.59 16 22 Cl -0.08 -3.05 27.07 -2.72 -0.07 -3.12 16 23 N -0.45 -22.68 8.89 -171.21 -1.52 -24.20 16 24 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.07 2.31 8.07 -2.38 -0.02 2.29 16 27 H 0.12 4.94 8.06 -2.91 -0.02 4.92 16 28 H 0.12 6.21 6.22 -2.91 -0.02 6.19 16 29 H 0.29 13.14 8.29 -92.72 -0.77 12.37 16 30 H 0.12 5.10 7.29 -2.91 -0.02 5.08 16 31 H 0.15 3.68 8.06 -2.91 -0.02 3.65 16 32 H 0.41 5.38 8.83 -92.71 -0.82 4.56 16 33 H 0.41 5.34 8.83 -92.71 -0.82 4.53 16 34 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -62.87 306.11 2.82 -60.05 By element: Atomic # 1 Polarization: 29.48 SS G_CDS: -0.47 Total: 29.01 kcal Atomic # 6 Polarization: -47.30 SS G_CDS: 3.08 Total: -44.22 kcal Atomic # 7 Polarization: -78.74 SS G_CDS: -1.75 Total: -80.49 kcal Atomic # 14 Polarization: 36.74 SS G_CDS: 2.03 Total: 38.77 kcal Atomic # 17 Polarization: -3.05 SS G_CDS: -0.07 Total: -3.12 kcal Total: -62.87 2.82 -60.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245505210.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.619 kcal (2) G-P(sol) polarization free energy of solvation -62.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds