Wall clock time and date at job start Tue Mar 31 2020 05:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31251 * 119.79838 * 2 1 4 4 C 1.33093 * 121.71290 * 180.02562 * 3 2 1 5 5 C 1.47741 * 119.46409 * 179.97438 * 4 3 2 6 6 C 1.39792 * 120.08158 * 224.31436 * 5 4 3 7 7 C 1.37633 * 119.94007 * 179.97438 * 6 5 4 8 8 C 1.39245 * 120.10462 * 359.97438 * 7 6 5 9 9 N 1.39258 * 119.92234 * 180.02562 * 8 7 6 10 10 C 1.39123 * 120.15363 * 359.97438 * 8 7 6 11 11 C 1.37838 * 120.05625 * 359.78054 * 10 8 7 12 12 Cl 1.73601 * 120.04948 * 180.25320 * 11 10 8 13 13 C 1.40030 * 121.07945 * 0.02562 * 4 3 2 14 14 C 1.36523 * 119.46453 * 359.97438 * 13 4 3 15 15 C 1.40958 * 119.79385 * 180.02562 * 2 1 3 16 16 C 1.41012 * 120.54552 * 0.25414 * 15 2 1 17 17 H 1.07997 * 120.00112 * 334.50328 * 16 15 2 18 18 C 1.39974 * 119.99971 * 154.50111 * 16 15 2 19 19 N 1.30820 * 120.00112 * 347.47737 * 18 16 15 20 20 Si 1.86803 * 119.99817 * 167.47600 * 18 16 15 21 21 H 1.48506 * 109.47004 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46858 * 120.00152 * 20 18 16 23 23 H 1.48500 * 109.47163 * 240.00004 * 20 18 16 24 24 H 1.08993 * 109.47330 * 269.98469 * 1 2 3 25 25 H 1.09007 * 109.46400 * 29.98370 * 1 2 3 26 26 H 1.08999 * 109.47115 * 149.97764 * 1 2 3 27 27 H 1.07997 * 120.02581 * 359.97438 * 6 5 4 28 28 H 1.07998 * 119.94519 * 179.97438 * 7 6 5 29 29 H 0.97000 * 120.00186 * 0.02562 * 9 8 7 30 30 H 0.97009 * 119.99731 * 180.02562 * 9 8 7 31 31 H 1.07998 * 119.97347 * 180.02562 * 10 8 7 32 32 H 1.08001 * 120.26549 * 180.02562 * 13 4 3 33 33 H 1.07991 * 120.78779 * 179.97438 * 14 13 4 34 34 H 0.96997 * 120.00078 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1593 1.1390 0.0000 4 6 3.4895 1.1834 -0.0005 5 6 4.1728 2.4933 -0.0011 6 6 5.2639 2.7140 -0.8466 7 6 5.8980 3.9356 -0.8451 8 6 5.4540 4.9520 -0.0032 9 7 6.0981 6.1867 -0.0051 10 6 4.3678 4.7371 0.8392 11 6 3.7249 3.5179 0.8393 12 17 2.3654 3.2522 1.8858 13 6 4.2520 0.0090 -0.0016 14 6 3.6207 -1.2016 -0.0016 15 6 2.2074 -1.2233 -0.0005 16 6 1.5096 -2.4486 -0.0065 17 1 0.5073 -2.5012 0.3921 18 6 2.1161 -3.5968 -0.5290 19 7 3.2170 -3.4946 -1.2282 20 14 1.3533 -5.2752 -0.2280 21 1 0.1203 -5.1200 0.5850 22 1 1.0117 -5.9042 -1.5292 23 1 2.3210 -6.1356 0.4988 24 1 -0.3633 -0.0003 1.0276 25 1 -0.3632 0.8902 -0.5136 26 1 -0.3633 -0.8898 -0.5142 27 1 5.6090 1.9267 -1.5003 28 1 6.7413 4.1061 -1.4980 29 1 6.8548 6.3380 -0.5928 30 1 5.7899 6.8954 0.5812 31 1 4.0257 5.5276 1.4907 32 1 5.3308 0.0604 -0.0016 33 1 4.1877 -2.1207 -0.0029 34 1 3.6371 -4.2902 -1.5906 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245506568.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:50 Heat of formation + Delta-G solvation = 32.061215 kcal Electronic energy + Delta-G solvation = -19484.996060 eV Core-core repulsion = 16407.303494 eV Total energy + Delta-G solvation = -3077.692566 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.21795 -38.12665 -35.84971 -34.61138 -33.79279 -31.66321 -30.64909 -30.30384 -28.29212 -26.86290 -24.69820 -22.50213 -22.23072 -20.59699 -20.03644 -17.36555 -17.06769 -16.73212 -15.89313 -15.34565 -14.60688 -14.12563 -13.99736 -13.74557 -13.30622 -13.20281 -12.88462 -12.78555 -12.24364 -11.71034 -11.57291 -11.46348 -11.38787 -11.20569 -10.97642 -10.85117 -10.79755 -10.54737 -10.15136 -9.97176 -9.70039 -9.41803 -8.38143 -8.15835 -7.96144 -7.65293 -6.95451 -6.84135 -4.47013 1.64783 1.73689 2.65334 2.83499 2.99036 3.01395 3.05015 3.20727 3.81041 3.99931 4.13373 4.60070 5.19173 5.29764 5.49427 5.59263 5.79651 5.94257 6.09250 6.15626 6.37233 6.44797 6.54341 6.65109 6.71346 6.78546 6.92991 6.94049 7.02525 7.06225 7.21693 7.39476 7.57721 7.77628 7.80393 7.88970 7.98658 8.42550 8.63811 8.73462 9.70550 10.00600 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.028539 B = 0.004384 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.870584 B = 6385.184521 C = 7121.779138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.007 3.993 3 N -0.433 5.433 4 C 0.009 3.991 5 C -0.028 4.028 6 C -0.063 4.063 7 C -0.193 4.193 8 C 0.204 3.796 9 N -0.881 5.881 10 C -0.195 4.195 11 C 0.023 3.977 12 Cl -0.058 7.058 13 C -0.128 4.128 14 C -0.140 4.140 15 C 0.072 3.928 16 C -0.435 4.435 17 H 0.086 0.914 18 C 0.071 3.929 19 N -0.786 5.786 20 Si 0.913 3.087 21 H -0.258 1.258 22 H -0.273 1.273 23 H -0.271 1.271 24 H 0.046 0.954 25 H 0.048 0.952 26 H 0.065 0.935 27 H 0.128 0.872 28 H 0.119 0.881 29 H 0.396 0.604 30 H 0.395 0.605 31 H 0.122 0.878 32 H 0.096 0.904 33 H 0.130 0.870 34 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.419 9.962 1.509 11.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.138 4.138 3 N -0.141 5.141 4 C -0.127 4.127 5 C -0.032 4.032 6 C -0.083 4.083 7 C -0.216 4.216 8 C 0.100 3.900 9 N -0.420 5.420 10 C -0.218 4.218 11 C -0.005 4.005 12 Cl -0.029 7.029 13 C -0.148 4.148 14 C -0.165 4.165 15 C 0.067 3.933 16 C -0.465 4.465 17 H 0.104 0.896 18 C -0.148 4.148 19 N -0.411 5.411 20 Si 0.737 3.263 21 H -0.181 1.181 22 H -0.198 1.198 23 H -0.196 1.196 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.083 0.917 27 H 0.146 0.854 28 H 0.137 0.863 29 H 0.223 0.777 30 H 0.222 0.778 31 H 0.140 0.860 32 H 0.114 0.886 33 H 0.147 0.853 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.980 10.504 1.465 11.328 hybrid contribution 0.455 -1.285 0.094 1.366 sum 4.435 9.220 1.559 10.349 Atomic orbital electron populations 1.20232 0.91278 1.01024 1.00189 1.20979 0.95023 0.88073 1.09725 1.66954 1.08161 1.30016 1.08926 1.18556 0.89209 0.90016 1.14888 1.18362 0.95871 0.92628 0.96303 1.20955 0.94311 0.96182 0.96849 1.20465 1.03820 0.93708 1.03623 1.17506 0.91869 0.86296 0.94344 1.42229 1.38010 1.12566 1.49241 1.20214 0.99362 0.97350 1.04888 1.20702 0.90881 0.94105 0.94802 1.98348 1.43353 1.96631 1.64555 1.21239 0.98260 0.93384 1.01954 1.21373 0.94779 0.96672 1.03672 1.18416 0.92522 0.93151 0.89183 1.19661 1.01538 0.92160 1.33114 0.89574 1.26041 0.94385 1.01733 0.92632 1.69786 1.16259 1.31851 1.23211 0.86162 0.80274 0.80618 0.79198 1.18150 1.19788 1.19603 0.93539 0.93274 0.91663 0.85438 0.86329 0.77673 0.77781 0.85975 0.88555 0.85261 0.90590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.49 9.58 36.01 0.34 -1.14 16 2 C 0.01 0.17 6.86 -81.81 -0.56 -0.39 16 3 N -0.43 -10.64 8.42 -5.41 -0.05 -10.68 16 4 C 0.01 0.21 5.99 -82.77 -0.50 -0.29 16 5 C -0.03 -0.57 5.64 -104.82 -0.59 -1.16 16 6 C -0.06 -1.09 9.34 -39.22 -0.37 -1.45 16 7 C -0.19 -2.78 9.87 -39.43 -0.39 -3.17 16 8 C 0.20 2.79 6.76 -83.78 -0.57 2.23 16 9 N -0.88 -8.36 9.07 32.44 0.29 -8.07 16 10 C -0.19 -3.01 9.65 -39.40 -0.38 -3.39 16 11 C 0.02 0.44 6.32 -39.11 -0.25 0.19 16 12 Cl -0.06 -1.11 26.75 -51.86 -1.39 -2.50 16 13 C -0.13 -3.01 9.31 -39.53 -0.37 -3.37 16 14 C -0.14 -3.56 8.72 -39.02 -0.34 -3.90 16 15 C 0.07 1.87 5.60 -106.63 -0.60 1.27 16 16 C -0.44 -10.91 8.15 -37.88 -0.31 -11.22 16 17 H 0.09 2.06 6.84 -52.49 -0.36 1.70 16 18 C 0.07 1.68 5.26 -17.33 -0.09 1.59 16 19 N -0.79 -19.28 10.73 55.55 0.60 -18.68 16 20 Si 0.91 17.72 29.58 -169.99 -5.03 12.69 16 21 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 22 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 23 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 24 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.05 0.99 8.14 -51.92 -0.42 0.56 16 26 H 0.06 1.35 6.75 -51.93 -0.35 1.00 16 27 H 0.13 2.09 7.89 -52.49 -0.41 1.67 16 28 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 29 H 0.40 2.92 8.83 -40.82 -0.36 2.56 16 30 H 0.39 3.03 8.83 -40.82 -0.36 2.67 16 31 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.10 2.02 7.89 -52.49 -0.41 1.60 16 33 H 0.13 3.34 6.11 -52.49 -0.32 3.02 16 34 H 0.28 6.27 8.30 -40.82 -0.34 5.94 16 LS Contribution 306.74 15.07 4.62 4.62 Total: -1.00 -28.31 306.74 -9.31 -37.62 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -3.40 Total: 9.21 kcal Atomic # 6 Polarization: -19.26 SS G_CDS: -4.96 Total: -24.21 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.84 Total: -37.43 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.69 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -1.39 Total: -2.50 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.31 -9.31 -37.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245506568.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.679 kcal (2) G-P(sol) polarization free energy of solvation -28.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds